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treangens library [233 articles]

Senaste artiklarna i treangens bibliotek.
  • Adapting to environmental changes using specialized paralogs
    Trends in Genetics, Vol. 24, No. 4. (April 2008), pp. 154-158.
    by Gabino Sanchez-Perez, Alex Mira, Gábor Nyiro, Lejla Pasic, Francisco Rodriguez-Valera
    posted to no-tag by treangen on 2008-07-11 15:32:49 as ***
  • Improved hit criteria for DNA local alignment.
    BMC Bioinformatics, Vol. 5 (14 October 2004)
    by L Noé, G Kucherov
    posted to no-tag by treangen on 2008-05-30 11:17:01 as *** along with 4 people AaronDarling timflutre nedwards bozdagd
  • The impact of the neisserial DNA uptake sequences on genome evolution and stability
    Genome Biology, Vol. 9, No. 3. (2008)
    by Todd Treangen, Ole H Ambur, Tone Tonjum, Eduardo Rocha
    posted to no-tag by treangen on 2008-04-15 14:33:07 as ** along with 1 person neils
  • PSAT: A web tool to compare genomic neighborhoods of multiple prokaryotic genomes
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Christine Fong, Laurence Rohmer, Matthew Radey, Michael Wasnick, Mitchell Brittnacher
    posted to no-tag by treangen on 2008-03-28 18:06:19 as *** along with 2 people neils maximilianh
  • Comparative genome assembly.
    Brief Bioinform, Vol. 5, No. 3. (September 2004), pp. 237-248.
    by M Pop, A Phillippy, AL Delcher, SL Salzberg
    posted to no-tag by treangen on 2008-02-12 08:02:48 as *** along with 7 people and 2 groups azazello wenhan urgi tpreeprem mariakmejia Neeperando Ema MBLAB gatech-compgenomics
  • Mind the gaps: Progress in progressive alignment
    Proceedings of the National Academy of Sciences, Vol. 102, No. 30. (26 July 2005), pp. 10411-10412.
    by DG Higgins, G Blackshields, IM Wallace
    posted to no-tag by treangen on 2008-02-12 06:54:40 as *** along with 2 people BioNica bpcusack
  • Multiple spaced seeds for homology search.
    Bioinformatics (5 September 2007)
    by Lucian Ilie, Silvana Ilie
    posted to no-tag by treangen on 2008-02-10 22:59:08 as *** along with 2 people cjeans nedwards
  • Patternhunter II: highly sensitive and fast homology search.
    J Bioinform Comput Biol, Vol. 2, No. 3. (September 2004), pp. 417-439.
    by M Li, B Ma, D Kisman, J Tromp
    posted to no-tag by treangen on 2008-02-10 22:58:40 as *** along with 1 person bozdagd
  • The Maintenance of Sex in Bacteria Is Ensured by Its Potential to Reload Genes
    Genetics, Vol. 174, No. 4. (1 December 2006), pp. 2173-2180.
    by Gergely J Szollosi, Imre Derenyi, Tibor Vellai
    posted to no-tag by treangen on 2008-02-09 11:58:52 as ***
  • Interference among deleterious mutations favours sex and recombination in finite populations
    Nature, Vol. 443, No. 7107., pp. 89-92.
    by Peter D Keightley, Sarah P Otto
    posted to no-tag by treangen on 2008-02-09 11:57:22 as *** along with 1 person emptyhb
  • Evolution of Natural Transformation: Testing the DNA Repair Hypothesis in Bacillus subtilis and Haemophilus influenzae
    Genetics, Vol. 133, No. 4. (1 April 1993), pp. 755-761.
    by RJ Redfield
    posted to no-tag by treangen on 2008-02-09 11:56:13 as ***
  • DNA Repair and the Evolution of Transformation in Haemophilus influenzae
    Genetics, Vol. 132, No. 4. (1 December 1992), pp. 893-898.
    by JA Mongold
    posted to no-tag by treangen on 2008-02-09 11:53:22 as ***
  • Transformation Proteins and DNA Uptake Localize to the Cell Poles in Bacillus subtilis
    Cell, Vol. 122, No. 1. (15 July 2005), pp. 59-71.
    by Jeanette Hahn, Berenike Maier, Bert J Haijema, Michael Sheetz, David Dubnau
    posted to no-tag by treangen on 2008-02-09 11:51:46 as *** along with 1 person karfunkel
  • Intracellular protein and DNA dynamics in competent Bacillus subtilis cells.
    Cell, Vol. 122, No. 1. (15 July 2005), pp. 73-84.
    by D Kidane, PL Graumann
    posted to no-tag by treangen on 2008-02-09 11:50:46 as *** along with 1 person johncumbers
  • DprA/Smf protein localizes at the DNA uptake machinery in competent Bacillus subtilis cells
    BMC Microbiology, Vol. 7 (28 November 2007), 105.
    by Serkalem Tadesse, Peter L Graumann
    posted to no-tag by treangen on 2008-02-09 11:49:19 as ***
  • Plastic cells and populations: DNA substrate characteristics in Helicobacter pylori transformation define a flexible but conservative system for genomic variation.
    FASEB J, Vol. 21, No. 13. (November 2007), pp. 3458-3467.
    by SM Levine, EA Lin, W Emara, J Kang, M DiBenedetto, T Ando, D Falush, MJ Blaser
    posted to no-tag by treangen on 2008-02-09 11:45:38 as *** along with 1 person xingxu
  • From The Cover: Competence-programmed predation of noncompetent cells in the human pathogen Streptococcus pneumoniae: Genetic requirements
    Proceedings of the National Academy of Sciences, Vol. 102, No. 24. (14 June 2005), pp. 8710-8715.
    by Sebastien Guiral, Tim J Mitchell, Bernard Martin, Jean-Pierre Claverys
    posted to no-tag by treangen on 2008-02-09 11:41:52 as ***
  • Competence-Induced Cells of Streptococcus pneumoniae Lyse Competence-Deficient Cells of the Same Strain during Cocultivation
    J. Bacteriol., Vol. 185, No. 24. (15 December 2003), pp. 7176-7183.
    by Hilde Steinmoen, Aina Teigen, Leiv S Havarstein
    posted to no-tag by treangen on 2008-02-09 11:40:29 as ***
  • Molecular and Biological Analysis of Eight Genetic Islands That Distinguish Neisseria meningitidis from the Closely Related Pathogen Neisseria gonorrhoeae
    Infect. Immun., Vol. 68, No. 4. (1 April 2000), pp. 2082-2095.
    by Silke R Klee, Xavier Nassif, Barica Kusecek, Petra Merker, Jean-Luc Beretti, Mark Achtman, Colin R Tinsley
    posted to no-tag by treangen on 2008-02-09 11:28:18 as ***
  • Acquired macrolide resistance genes and the 1 bp deletion in the mtrR promoter in Neisseria gonorrhoeae
    J. Antimicrob. Chemother., Vol. 51, No. 1. (1 January 2003), pp. 131-133.
    by Sydney L Cousin, William L Whittington, Marilyn C Roberts
    posted to no-tag by treangen on 2008-02-09 11:25:55 as ***
  • A chromosomally integrated bacteriophage in invasive meningococci
    J. Exp. Med., Vol. 201, No. 12. (20 June 2005), pp. 1905-1913.
    by Emmanuelle Bille, Jean-Ralph Zahar, Agnes Perrin, Sandrine Morelle, Paula Kriz, Keith A Jolley, Martin C Maiden, Catherine Dervin, Xavier Nassif, Colin R Tinsley
    posted to no-tag by treangen on 2008-02-09 11:24:07 as *** along with 1 person martainn
  • Microarray analysis of the Bacillus subtilis K-state: genome-wide expression changes dependent on ComK.
    Mol Microbiol, Vol. 43, No. 5. (March 2002), pp. 1331-1345.
    by RM Berka, J Hahn, M Albano, I Draskovic, M Persuh, X Cui, A Sloma, W Widner, D Dubnau
    posted to no-tag by treangen on 2008-02-09 11:19:44 as *** along with 1 person mhucka
  • Do bacteria have sex?
    Nat Rev Genet, Vol. 2, No. 8. (2001), pp. 634-639.
    by Rosemary J Redfield
    posted to no-tag by treangen on 2008-02-09 11:18:43 as ***
  • Natural genetic exchange between Haemophilus and Neisseria: Intergeneric transfer of chromosomal genes between major human pathogens
    PNAS, Vol. 95, No. 21. (13 October 1998), pp. 12381-12385.
    by Simon J Kroll, Kathryn E Wilks, Jayne L Farrant, Paul R Langford
    posted to no-tag by treangen on 2008-02-09 11:15:38 as *** along with 1 person AaronDarling
  • Hypermutation in Pathogenic Bacteria: Frequent Phase Variation in Meningococci Is a Phenotypic Trait of a Specialized Mutator Biotype
    Molecular Cell, Vol. 3, No. 4. (April 1999), pp. 435-445.
    by Cecilia Bucci, Alfredo Lavitola, Paola Salvatore, Luigi Del Giudice, Domenica R Massardo, Carmelo B Bruni, Pietro Alifano
    posted to no-tag by treangen on 2008-02-09 11:12:15 as ***
  • DNA repair profiles of disease-associated isolates of Neisseria meningitidis.
    FEMS Immunol Med Microbiol, Vol. 49, No. 2. (March 2007), pp. 243-251.
    by T Davidsen, EK Amundsen, EA Rødland, T Tønjum
    posted to no-tag by treangen on 2008-02-09 11:07:19 as ***
  • Mutator clones of Neisseria meningitidis in epidemic serogroup A disease
    Proceedings of the National Academy of Sciences, Vol. 99, No. 9. (30 April 2002), pp. 6103-6107.
    by Anthony R Richardson, Zhong Yu, Tanja Popovic, Igor Stojiljkovic
    posted to no-tag by treangen on 2008-02-09 11:05:58 as ***
  • Complete and variant forms of the 'gonococcal genetic island' in Neisseria meningitidis.
    Microbiology, Vol. 151, No. Pt 12. (December 2005), pp. 4005-4013.
    by LA Snyder, SA Jarvis, NJ Saunders
    posted to no-tag by treangen on 2008-02-09 11:01:22 as ***
  • Neisseria gonorrhoeae secretes chromosomal DNA via a novel type IV secretion system
    Molecular Microbiology, Vol. 55, No. 6. (March 2005), pp. 1704-1721.
    by Holly L Hamilton, Nadia M Dominguez, Kevin J Schwartz, Kathleen T Hackett, Joseph P Dillard
    posted to no-tag by treangen on 2008-02-09 11:00:23 as ***
  • Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake
    Genome Biology, Vol. 8 (21 February 2007), R22.
    by Carleton L Kingsford, Kunmi Ayanbule, Steven L Salzberg
    posted to no-tag by treangen on 2008-02-09 10:59:08 as *** along with 1 person msuarezdiez
  • Uncertainty in homology inferences: Assessing and improving genomic sequence alignment
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 298-309.
    by Gerton Lunter, Andrea Rocco, Naila Mimouni, Andreas Heger, Alexandre Caldeira, Jotun Hein
    posted to no-tag by treangen on 2008-02-06 21:41:17 as *** along with 8 people aprasad brant djkt grahamc dandaman mailund gjuggler AaronDarling
  • Confidence in comparative genomics
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 199-200.
    by Elliott H Margulies
    posted to no-tag by treangen on 2008-02-06 21:39:30 as *** along with 4 people djkt xingxu maximilianh boudinot
  • Orthology, paralogy and proposed classification for paralog subtypes
    Trends in Genetics, Vol. 18, No. 12. (1 December 2002), pp. 619-620.
    by Erik L Sonnhammer, Eugene V Koonin
    posted to no-tag by treangen on 2008-02-06 11:33:09 as *** along with 1 person cjeans
  • The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions
    Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 902-911.
    by Yu Yi-Kuo, F Altschul
    posted to no-tag by treangen on 2008-02-04 15:53:03 as ***
  • The compositional adjustment of amino acid substitution matrices
    Proceedings of the National Academy of Sciences, Vol. 100, No. 26. (23 December 2003), pp. 15688-15693.
    by Yi-Kuo Yu, John C Wootton, Stephen F Altschul
    posted to no-tag by treangen on 2008-02-04 15:52:47 as ***
  • Mobile elements: drivers of genome evolution.
    Science, Vol. 303, No. 5664. (12 March 2004), pp. 1626-1632.
    by HH Kazazian
    posted to no-tag by treangen on 2008-02-01 02:27:31 as *** along with 4 people aprasad timflutre RamuAnandakrishnan yoanjacquemin
  • Construction of phylogenetic trees.
    Science, Vol. 155, No. 760. (20 January 1967), pp. 279-284.
    by WM Fitch, E Margoliash
    posted to no-tag by treangen on 2008-01-31 14:40:49 as ***
  • Computer aids to protein sequence determination.
    J Theor Biol, Vol. 8, No. 1. (January 1965), pp. 97-112.
    by MO Dayhoff
    posted to no-tag by treangen on 2008-01-31 14:39:32 as ***
  • Complementary DNA sequencing: expressed sequence tags and human genome project
    Science, Vol. 252, No. 5013. (21 June 1991), pp. 1651-1656.
    by Md Adams, Jm Kelley, Jd Gocayne, M Dubnick, Mh Polymeropoulos, H Xiao, Cr Merril, A Wu, B Olde, Rf Moreno, Al Et
    posted to no-tag by treangen on 2008-01-30 23:44:03 as *** along with 1 person sanchezbuelna
  • Sequence analysis of phosphoserine-containing peptides. Modification for picomolar sensitivity.
    FEBS Lett, Vol. 204, No. 1. (11 August 1986), pp. 61-66.
    by HE Meyer, E Hoffmann-Posorske, H Korte, LM Heilmeyer
    posted to no-tag by treangen on 2008-01-30 23:33:28 as ***
  • Studies on polynucleotides. XCVI. Repair replications of short synthetic DNA's as catalyzed by DNA polymerases.
    J Mol Biol, Vol. 56, No. 2. (14 March 1971), pp. 341-361.
    by K Kleppe, E Ohtsuka, R Kleppe, I Molineux, HG Khorana
    posted to no-tag by treangen on 2008-01-30 23:27:50 as ***
  • A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase.
    J Mol Biol, Vol. 94, No. 3. (25 May 1975), pp. 441-448.
    by F Sanger, AR Coulson
    posted to no-tag by treangen on 2008-01-30 23:20:52 as ***
  • Molecules as documents of evolutionary history.
    J Theor Biol, Vol. 8, No. 2. (March 1965), pp. 357-366.
    by E Zuckerkandl, L Pauling
    posted to no-tag by treangen on 2008-01-30 23:18:38 as *** along with 1 person AaronDarling
  • Characteristics and stabilization of DNAase-sensitive protein synthesis in E. coli extracts.
    Proc Natl Acad Sci U S A, Vol. 47 (15 October 1961), pp. 1580-1588.
    by JH MATTHAEI, MW NIRENBERG
    posted to no-tag by treangen on 2008-01-30 23:17:18 as ***
  • The amide groups of insulin.
    Biochem J, Vol. 59, No. 3. (March 1955), pp. 509-518.
    by F SANGER, EO THOMPSON, R KITAI
    posted to no-tag by treangen on 2008-01-30 23:12:11 as ***
  • Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.
    Nature, Vol. 171, No. 4356. (25 April 1953), pp. 737-738.
    by JD WATSON, FH CRICK
    posted to no-tag by treangen on 2008-01-30 23:07:20 as *** along with 9 people and 2 groups ecattell jwm dullhunk craigtalbert tvdbulck megs incovoma candypmcg dna Radiation_Damage Stressosome
  • Independent functions of viral protein and nucleic acid in growth of bacteriophage.
    J Gen Physiol, Vol. 36, No. 1. (May 1952), pp. 39-56.
    by AD HERSHEY, M CHASE
    posted to no-tag by treangen on 2008-01-30 23:05:36 as ***
  • ON THE CONFIGURATIONAL RELATIONSHIP OF 3-CHLOROBUTYRIC AND 3-HYDROXYBUTYRIC ACIDS.
    Science, Vol. 69, No. 1776. (11 January 1929)
    by P A A Levene, H L L Haller
    posted to no-tag by treangen on 2008-01-30 22:59:16 as ***
  • A THIRD GROUP OF LINKED GENES IN DROSOPHILA AMPELOPHILA.
    Science, Vol. 37, No. 965. (27 June 1913), pp. 990-992.
    by A H H Sturtevant
    posted to no-tag by treangen on 2008-01-30 22:54:42 as ***
  • DAGchainer: a tool for mining segmental genome duplications and synteny
    Bioinformatics, Vol. 20, No. 18., 3643.
    by Brian J Haas, Arthur L Delcher, Steven L Salzberg
    posted to no-tag by treangen on 2008-01-22 15:52:55 as *** along with 1 person Neeperando
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