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timflutres library [395 articles]

Senaste artiklarna i timflutres bibliotek.
  • notes Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites.
    Mol Biol Evol, Vol. 10, No. 6. (November 1993), pp. 1396-1401.
    by Z Yang
    posted to stats phylogeny molec_evo by timflutre on 2008-06-12 19:08:28 as ** along with 1 person bpb
  • notes Estimating the pattern of nucleotide substitution
    Journal of Molecular Evolution, Vol. 39, No. 1. (1 July 1994), pp. 105-111.
    by Ziheng Yang
    posted to phylogeny molec_evo by timflutre on 2008-06-12 18:44:17 as ** along with 1 person CharlesM
  • notes Confidence Limits on Phylogenies: An Approach Using the Bootstrap
    Evolution, Vol. 39, No. 4. (1985), pp. 783-791.
    by Joseph Felsenstein
    posted to stats phylogeny molec_evo bioinformatics by timflutre on 2008-06-12 17:48:05 as ** along with 1 person bandrewfox
  • notes Rooting a phylogenetic tree with nonreversible substitution models.
    BMC evolutionary biology, Vol. 5, No. 1. (4 January 2005)
    by VB Yap, T Speed
    posted to phylogeny molec_evo by timflutre on 2008-06-12 17:26:22 as read
  • Inaugural Article: Rapid recent growth and divergence of rice nuclear genomes
    Proceedings of the National Academy of Sciences, Vol. 101, No. 34. (24 August 2004), pp. 12404-12410.
    by Jianxin Ma, Jeffrey L Bennetzen
    posted to rice molec_evo genomics by timflutre on 2008-06-04 09:10:16 as **
  • ÉTUDE DE LA DYNAMIQUE DES RÉPÉTITIONS DANS LES GÉNOMES EUCARYOTES: DE LEUR FORMATION À LEUR ÉLIMINATION
    by Anna-Sophie Fiston-Lavier
    posted to thesis droso bioinformatics athaliana by timflutre on 2008-05-27 10:46:42 as ***** along with 1 person urgi
  • Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics
    Science (24 April 2008), 1157956.
    by Katja Baerenfaller, Jonas Grossmann, Monica A Grobei, Roger Hull, Matthias Hirsch-Hoffmann, Shaul Yalovsky, Philip Zimmermann, Ueli Grossniklaus, Wilhelm Gruissem, Sacha Baginsky
    posted to proteomics plants genomics athaliana by timflutre on 2008-05-21 09:12:36 as *** along with 4 people megraw renatomilani caseybrown xwbcn
  • Alignment Uncertainty and Genomic Analysis
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476.
    by Karen M Wong, Marc A Suchard, John P Huelsenbeck
    posted to genomics bioinformatics by timflutre on 2008-05-20 17:52:18 as ** along with 23 people and 2 groups pradiptaray jdelcampo gracio adacier jyuh bpb aprasad dayjm dpollard tny djkt cjeans zwang lisa1 cactus biomcgary lilou kinestetika dandaman gjuggler renatomilani mclarenv youdon EisenLab microbiology_nijmegen
  • notes Molecular phylogenetics: state-of-the-art methods for looking into the past
    Trends in Genetics, Vol. 17, No. 5. (1 May 2001), pp. 262-272.
    by Simon Whelan, Pietro Lio, Nick Goldman
    posted to stats phylogeny molec_evo by timflutre on 2008-05-19 14:18:28 as read along with 2 people dayjm BioNica
  • Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution.
    Genome Res, Vol. 13, No. 1. (January 2003), pp. 13-26.
    by RC Hardison, KM Roskin, S Yang, M Diekhans, WJ Kent, R Weber, L Elnitski, J Li, M O'Connor, D Kolbe, S Schwartz, TS Furey, S Whelan, N Goldman, A Smit, W Miller, F Chiaromonte, D Haussler
    posted to te recombination humans genomics evolution by timflutre on 2008-05-16 08:37:09 as *** along with 1 person gjuggler
  • Recommandation de la Commission Européenne concernant la charte européenne du chercheur et un code de conduite pour le recrutement des chercheurs
    Journal officiel de l’Union européenne (11 March 2005)
    by Commission Européenne
    posted to misc by timflutre on 2008-05-14 10:51:19 as read along with 1 group Centre de Recherches Interdisciplinaires
  • A student's guide to research
    Control Systems Magazine, IEEE, Vol. 19, No. 1. (1999), pp. 102-108.
    by DS Bernstein
    posted to misc by timflutre on 2008-05-14 09:36:17 as ** along with 2 people and 1 group pratap nalf Centre de Recherches Interdisciplinaires
  • Fostering creativity. A model for developing a culture of collective creativity in science.
    EMBO reports, Vol. 8, No. 3. (March 2007), pp. 202-206.
    by CJ Neumann
    posted to misc by timflutre on 2008-05-13 18:26:23 as ** along with 1 person and 1 group qwermish Centre de Recherches Interdisciplinaires
  • Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm
    BMC Bioinformatics, Vol. 9 (13 May 2008), 235.
    by Jeremy D Debarry, Renyi Liu, Jeffrey L Bennetzen
    posted to repeats bioinformatics annotation by timflutre on 2008-05-13 11:20:58 as *** along with 1 person Neeperando
  • Recent developments in the MAFFT multiple sequence alignment program.
    Briefings in bioinformatics (27 March 2008)
    by Kazutaka Katoh, Hiroyuki Toh
    posted to rpt bioinformatics by timflutre on 2008-05-07 09:13:06 as *** along with 1 person urgi
  • The Epigenetic Landscape of Plants
    Science, Vol. 320, No. 5875. (25 April 2008), pp. 489-492.
    by Xiaoyu Zhang
    posted to plants epigenetics by timflutre on 2008-05-02 14:25:44 as ** along with 2 people and 1 group natstreet ArtemPankin Khavkin's lab
  • Selection on Major Components of Angiosperm Genomes
    Science, Vol. 320, No. 5875. (25 April 2008), pp. 484-486.
    by Brandon S Gaut, Jeffrey Ross-Ibarra
    posted to te plants by timflutre on 2008-05-02 14:05:49 as ** along with 4 people and 1 group echinotrix aprasad ArtemPankin biomcgary Khavkin's lab
  • Genomic Plasticity and the Diversity of Polyploid Plants
    Science, Vol. 320, No. 5875. (25 April 2008), pp. 481-483.
    by AR Leitch, IJ Leitch
    posted to polyploidy plants by timflutre on 2008-05-02 13:58:05 as ** along with 5 people and 1 group echinotrix natstreet ArtemPankin imtechnology biomcgary Khavkin's lab
  • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
    Nucleic Acids Res, Vol. 25, No. 5. (1 March 1997), pp. 955-964.
    by TM Lowe, SR Eddy
    posted to te rpt bioinformatics by timflutre on 2008-04-25 13:53:49 as *** along with 7 people and 1 group ziquje evaf arcticrasta dquest vwchan djkt dandaman beta
  • Darwin's greatest discovery: design without designer.
    Proc Natl Acad Sci U S A, Vol. 104 Suppl 1 (15 May 2007), pp. 8567-8573.
    by FJ Ayala
    posted to evolution philo by timflutre on 2008-04-19 12:39:10 as ** along with 3 people and 1 group tanchize altotor hervelequere Centre de Recherches Interdisciplinaires
  • Genetics and biochemistry of RNAi in Drosophila.
    Current topics in microbiology and immunology, Vol. 320 (2008), pp. 37-75.
    by HH Kavi, H Fernandez, W Xie, JA Birchler
    posted to epigenetics rna_silencing by timflutre on 2008-04-08 17:01:57 as **
  • From GC skews to wavelets: A gentle guide to the analysis of compositional asymmetries in genomic data
    Biochimie, Vol. 90, No. 4. (April 2008), pp. 648-659.
    by Marie Touchon, Eduardo P Rocha
    posted to gcskew genomic wavelets by timflutre on 2008-04-02 16:13:35 as **
  • Structure, dynamics, and evolution of centromeric nucleosomes
    Proceedings of the National Academy of Sciences (24 September 2007), 0707648104.
    by Yamini Dalal, Takehito Furuyama, Danielle Vermaak, Steven Henikoff
    posted to centromere genomics nucleosome by timflutre on 2008-03-27 23:25:46 as ** along with 1 person epigenetics
  • Phylogenomics of the nucleosome.
    Nat Struct Biol, Vol. 10, No. 11. (November 2003), pp. 882-891.
    by HS Malik, S Henikoff
    posted to nucleosome phylogeny by timflutre on 2008-03-27 23:24:38 as **
  • Conflict begets complexity: the evolution of centromeres.
    Curr Opin Genet Dev, Vol. 12, No. 6. (December 2002), pp. 711-718.
    by HS Malik, S Henikoff
    posted to centromere by timflutre on 2008-03-27 23:22:53 as **
  • notes De novo repeat classification and fragment assembly.
    Genome Res, Vol. 14, No. 9. (September 2004), pp. 1786-1796.
    by PA Pevzner, H Tang, G Tesler
    posted to bioinformatics repeats by timflutre on 2008-03-27 14:26:01 as *** along with 11 people Ema Neeperando brl briann operon azazello prajlondhe nedwards urgi yoanjacquemin dmc
  • Ancestral reconstruction of segmental duplications reveals punctuated cores of human genome evolution
    Nature Genetics, Vol. 39, No. 11. (07 October 2007), pp. 1361-1368.
    by Zhaoshi Jiang, Haixu Tang, Mario Ventura, Maria F Cardone, Tomas Marques-Bonet, Xinwei She, Pavel A Pevzner, Evan E Eichler
    posted to bioinformatics duplication genomics humans by timflutre on 2008-03-27 13:08:41 as ***** along with 2 people urgi dmc
  • Improved detection and annotation of transposable elements in sequenced genomes using multiple reference sequence sets.
    Genomics (13 March 2008)
    by Nicolas Buisine, Hadi Quesneville, Vincent Colot
    posted to athaliana bioinformatics rpt te by timflutre on 2008-03-20 10:36:22 as ** along with 4 people PetrovLab operon dchughes urgi
  • LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (July 2007)
    by Z Xu, H Wang
    posted to bioinformatics rpt by timflutre on 2008-03-18 10:47:03 as ** along with 2 people urgi yoanjacquemin
  • ReAS: Recovery of Ancestral Sequences for Transposable Elements from the Unassembled Reads of a Whole Genome Shotgun
    PLoS Computational Biology, Vol. 1, No. 4. (1 September 2005), e43.
    by Ruiqiang Li, Jia Ye, Songgang Li, Jing Wang, Yujun Han, Chen Ye, Jian Wang, Huanming Yang, Jun Yu, Gane K Wong, Jun Wang
    posted to bioinformatics rpt by timflutre on 2008-03-18 10:45:03 as ** along with 1 person yoanjacquemin
  • Computational Epigenetics.
    Bioinformatics (17 November 2007)
    by Christoph Bock, Thomas Lengauer
    posted to bioinformatics epigenetics by timflutre on 2008-03-17 17:08:11 as ** along with 11 people and 1 group jyuh Thomasah Ema sebastien_vigneau ealloza djkt frohike cjeans epigenetics cabbagezs barriot Bioinformatics
  • BLAT--the BLAST-like alignment tool.
    Genome Res, Vol. 12, No. 4. (April 2002), pp. 656-664.
    by WJ Kent
    posted to bioinformatics by timflutre on 2008-03-17 17:05:13 as ** along with 19 people and 1 group bozdagd gpappas talponer operon miguel pcahan1 Ayest indigoviolet mtagaya treangen michC djkt olympos cjeans wenhan natstreet antonkratz inesdesantiago yoanjacquemin EisenLab
  • notes A novel method for multiple alignment of sequences with repeated and shuffled elements
    Genome Res., Vol. 14, No. 11. (1 November 2004), pp. 2336-2346.
    by Benjamin Raphael, Degui Zhi, Haixu Tang, Pavel Pevzner
    posted to bioinformatics by timflutre on 2008-03-17 15:52:35 as ** along with 1 person treangen
  • On the Process of Becoming a Great Scientist
    PLoS Computational Biology, Vol. 4, No. 2. (1 February 2008), e33.
    by Morgan C Giddings
    posted to misc by timflutre on 2008-03-17 09:17:11 as ** along with 3 people and 1 group dullhunk RamuAnandakrishnan sci91078 Centre de Recherches Interdisciplinaires
  • notes Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    Journal of Molecular Evolution, Vol. 22, No. 2. (1 October 1985), pp. 160-174.
    by Masami Hasegawa, Hirohisa Kishino, Taka-Aki Yano
    posted to modeling molec_evo by timflutre on 2008-03-06 14:12:28 as **
  • Empirical comparison of ab initio repeat finding programs
    Nucl. Acids Res. (20 February 2008), gkn064.
    by Surya Saha, Susan Bridges, Zenaida V Magbanua, Daniel G Peterson
    posted to bioinformatics repeats rpt by timflutre on 2008-03-05 13:07:17 as ** along with 5 people tharris Ema GustavoLacerda operon wisdom_love
  • notes An algorithm for progressive multiple alignment of sequences with insertions
    PNAS, Vol. 102, No. 30. (26 July 2005), pp. 10557-10562.
    by Ari Loytynoja, Nick Goldman
    posted to rpt bioinformatics by timflutre on 2008-02-29 09:44:27 as ** along with 4 people and 1 group dgront hpaces stevanspringer gjuggler FAB-lab
  • What is Bayesian statistics?
    Nat Biotech, Vol. 22, No. 9. (2004), pp. 1177-1178.
    by Sean R Eddy
    posted to modeling stats by timflutre on 2008-02-29 09:38:50 as ** along with 2 people abbie_riner Yanno
  • What is a hidden Markov model?
    Nat Biotechnol, Vol. 22, No. 10. (October 2004), pp. 1315-1316.
    by SR Eddy
    posted to modeling by timflutre on 2008-02-29 09:35:20 as ** along with 6 people and 1 group dullhunk brian aprasad indigoviolet berthoums mailund EisenLab
  • "Antedisciplinary" science.
    PLoS Comput Biol, Vol. 1, No. 1. (June 2005)
    by SR Eddy
    posted to misc by timflutre on 2008-02-29 09:02:08 as ** along with 3 people and 1 group tomisc qwermish dullhunk Centre de Recherches Interdisciplinaires
  • notes Evolution of protein molecules
    (1969), pp. 21-132.
    by TH Jukes, C Cantor
    edited by Academic
    posted to molec_evo by timflutre on 2008-02-28 10:36:50 as read
  • MAFFT version 5: improvement in accuracy of multiple sequence alignment.
    Nucleic Acids Res, Vol. 33, No. 2. (2005), pp. 511-518.
    by K Katoh, K Kuma, H Toh, T Miyata
    posted to bioinformatics rpt by timflutre on 2008-02-22 15:13:40 as ** along with 3 people and 1 group urgi caporaso rabio biomedical-nlp
  • MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.
    Nucleic Acids Res, Vol. 30, No. 14. (15 July 2002), pp. 3059-3066.
    by K Katoh, K Misawa, K Kuma, T Miyata
    posted to bioinformatics rpt by timflutre on 2008-02-22 15:10:03 as ** along with 5 people urgi treangen zmasek rabio marti
  • A generalized global alignment algorithm
    Bioinformatics, Vol. 19, No. 2. (22 January 2003), pp. 228-233.
    by Xiaoqiu Huang, Kun-Mao Chao
    posted to bioinformatics by timflutre on 2008-02-06 09:54:53 as **
  • notes On global sequence alignment.
    Computer Applications in the Biosciences, Vol. 10, No. 3. (June 1994), pp. 227-235.
    by X Huang
    posted to bioinformatics rpt by timflutre on 2008-02-06 09:53:19 as **
  • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
    Nucleic Acids Res, Vol. 22, No. 22. (11 November 1994), pp. 4673-4680.
    by JD Thompson, DG Higgins, TJ Gibson
    posted to bioinformatics rpt by timflutre on 2008-02-06 09:33:31 as ** along with 22 people and 1 group newton1234 jmw greger_halltorp jshapiro mercaptan evaf caldavis miguel onlyrey bjorns aprasad RMGraze moborg arcticrasta dullhunk caporaso ahanora Haggan BioNica leelarcombe adijr xingxu biomedical-nlp
  • Basic local alignment search tool.
    J Mol Biol, Vol. 215, No. 3. (5 October 1990), pp. 403-410.
    by SF Altschul, W Gish, W Miller, EW Myers, DJ Lipman
    posted to bioinformatics by timflutre on 2008-02-04 08:43:34 as ** along with 40 people and 5 groups benwei ashaytan camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti hervelequere dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
  • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.
    Proc Natl Acad Sci U S A, Vol. 87, No. 6. (March 1990), pp. 2264-2268.
    by S Karlin, SF Altschul
    posted to bioinformatics stats by timflutre on 2008-02-04 08:41:55 as ** along with 7 people and 1 group kaspermunch AaronDarling rabio cjeans siebertm adijr karfunkel Bioinformatics
  • Statistics of local multiple alignments.
    Bioinformatics, Vol. 21 Suppl 1 (June 2005)
    by A Prakash, M Tompa
    posted to bioinformatics by timflutre on 2008-01-31 10:43:59 as *** along with 2 people AaronDarling treangen
  • Repbase Update, a database of eukaryotic repetitive elements.
    Cytogenet Genome Res, Vol. 110, No. 1-4. (2005), pp. 462-467.
    by J Jurka, VV Kapitonov, A Pavlicek, P Klonowski, O Kohany, J Walichiewicz
    posted to bioinformatics repeats rpt te by timflutre on 2008-01-31 10:41:54 as ** along with 4 people AaronDarling nume urgi yoanjacquemin
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