Registrera dig | Logga in | FAQ      [?] 
Recent | Unread | Search | Authors | Tags | Export

softsimus coarse-graining [58 articles]

Senaste hänvisningarna i softsimus bibliotek insorterade under taggen coarse-graining. You can also see everyone's coarse-graining.
  • Multiscale Simulation of Soft Matter: From Scale Bridging to Adaptive Resolution
    Annual Review of Physical Chemistry, Vol. 59, No. 1. (2008), pp. 545-571.
    by Matej Praprotnik, Luigi Delle Site, Kurt Kremer
    posted to coarse-graining by softsimu on 2008-10-03 10:00:06 as ** along with 1 person RamuAnandakrishnan
  • Accelerated equilibration of polymer melts by time-coarse-graining
    The Journal of Chemical Physics, Vol. 102, No. 18. (1995), pp. 7256-7266.
    by Bruce M Forrest, Ulrich W Suter
    posted to coarse-graining by softsimu on 2008-10-02 15:09:59 as **
  • Dynamics of coarse-grained fluid mixtures: how important is the static structure?
    Molecular Physics, Vol. 105, No. 8. (2007), pp. 1039-1052.
    by Sabine H Klapp, Jörg R Silbermann, Martin Schoen
    posted to coarse-graining by softsimu on 2008-10-02 15:09:06 as **
  • A novel method for measuring the bending rigidity of model lipid membranes by simulating tethers
    The Journal of Chemical Physics, Vol. 125, No. 20. (2006)
    by Vagelis A Harmandaris, Markus Deserno
    posted to coarse-graining by softsimu on 2008-10-02 14:57:21 as **
  • Computational Modeling of Membrane Bilayers
    Vol. 60 (2008)
    edited by Scott K Feller
    posted to membranes file-import-08-10-02 coarse-graining by softsimu on 2008-10-02 09:50:01 as **
  • Mesoscopic models of biological membranes
    Physics Reports, Vol. 437 (2006), pp. 1-54.
    by Maddalena Venturoli, Maria M Sperotto, Marieke Kranenburg, Berend Smit
    posted to file-import-08-10-02 coarse-graining by softsimu on 2008-10-02 09:42:40 as **
  • Biological and synthetic membranes: What can be learned from a coarse-grained description?
    Physics Reports, Vol. 434 (2006), pp. 113-176.
    by Marcus Müller, Kirill Katsov, Michael Schick
    posted to file-import-08-10-02 coarse-graining by softsimu on 2008-10-02 09:37:37 as **
  • Test of the Gouy-Chapman Theory for a Charged Lipid Membrane against Explicit-Solvent Molecular Dynamics Simulations
    Physical Review Letters, Vol. 101, No. 3. (2008)
    by Myunggi Yi, Hugh Nymeyer, Huan X Zhou
    posted to gouy-chapman electrostatics coarse-graining by softsimu on 2008-09-27 14:36:52 as ** along with 3 people and 1 group j_vinals sobolevnrm agrossfield baker-group
  • Thermodynamically Admissible Form for Discrete Hydrodynamics
    Physical Review Letters, Vol. 83, No. 22. (29 November 1999), 4542.
    by Pep Español, Mar Serrano, Hans C Öttinger
    posted to coarse-graining generic by softsimu on 2008-06-27 21:44:04 as **
  • A Quantitative Coarse-Grain Model for Lipid Bilayers
    J. Phys. Chem. B, Vol. 112, No. 3. (24 January 2008), pp. 802-815.
    by M Orsi, DY Haubertin, WE Sanderson, JW Essex
    posted to coarse-graining by softsimu on 2008-06-27 19:34:14 as ** along with 2 people and 1 group sobolevnrm paulschlesinger baker-group
  • The MARTINI Coarse-Grained Force Field: Extension to Proteins
    J. Chem. Theory Comput. (16 April 2008)
    by Luca Monticelli, Senthil K Kandasamy, Xavier Periole, Ronald G Larson, Peter D Tieleman, Siewert-Jan Marrink
    posted to coarse-graining martini by softsimu on 2008-06-27 19:29:01 as ** along with 6 people and 2 groups Marine middledomain sobolevnrm Ema aqeel DanielParton Molecular dynamics in MSU baker-group
  • Simulations of biomembranes and water: Important technical aspects
    Fluid Phase Equilib., Vol. 261, No. 1-2. (2007), pp. 18-25.
    by SV Bennun, AN Dickey, C Xing, R Faller
    posted to coarse-graining by softsimu on 2008-04-11 19:21:52 as **
  • A strategy for analysis of (molecular) equilibrium simulations: Configuration space density estimation, clustering, and visualization
    The Journal of Chemical Physics, Vol. 114, No. 5. (2001), pp. 2079-2089.
    by Fred A Hamprecht, Christine Peter, Xavier Daura, Walter Thiel, Wilfred F van Gunsteren
    posted to coarse-graining by softsimu on 2008-03-18 19:02:32 as **
  • A systematic method to derive force fields for coarse-grained simulations of phospholipids
    Computer Physics Communications, Vol. 175, No. 4. (15 August 2006), pp. 264-268.
    by J Elezgaray, M Laguerre
    posted to coarse-graining by softsimu on 2008-03-18 18:59:12 as **
  • Transmembrane Peptide-Induced Lipid Sorting and Mechanism of Lalpha-to-Inverted Phase Transition Using Coarse-Grain Molecular Dynamics
    Biophys. J., Vol. 87, No. 4. (1 October 2004), pp. 2107-2115.
    by Steve O Nielsen, Carlos F Lopez, Ivaylo Ivanov, Preston B Moore, John C Shelley, Michael L Klein
    posted to coarse-graining peptides by softsimu on 2008-03-18 18:53:51 as **
  • Tunable generic model for fluid bilayer membranes
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 72, No. 1. (2005)
    by Ira R Cooke, Kurt Kremer, Markus Deserno
    posted to coarse-graining by softsimu on 2008-03-18 17:53:44 as **
  • Aggregation and vesiculation of membrane proteins by curvature-mediated interactions
    Nature, Vol. 447, No. 7143., pp. 461-464.
    by Benedict J Reynwar, Gregoria Illya, Vagelis A Harmandaris, Martin M Müller, Kurt Kremer, Markus Deserno
    posted to coarse-graining vesicles by softsimu on 2008-03-18 17:51:29 as ** along with 1 person choonpeng
  • Implicit solvent simulation models for biomembranes
    European Biophysics Journal, Vol. 35, No. 2. (11 January 2006), pp. 104-124.
    by Grace Brannigan, Lawrence Lin, Frank Brown
    posted to coarse-graining implicit-solvent by softsimu on 2008-03-18 17:50:16 as **
  • Stability and Dynamics of Virus Capsids Described by Coarse-Grained Modeling
    Structure, Vol. 14 (2006), pp. 1767-1777.
    by A Arkhipov, PL Freddolino, K Schulten
    posted to coarse-graining by softsimu on 2008-03-18 17:40:28 as **
  • Coarse-Grained Molecular Dynamics Simulations of a Rotating Bacterial Flagellum.
    Biophys J (22 September 2006)
    by Anton Arkhipov, Peter L L Freddolino, Katsumi Imada, Keiichi Namba, Klaus Schulten
    posted to coarse-graining by softsimu on 2008-03-18 17:37:44 as ** along with 1 person choonpeng
  • Multiscale coarse graining of liquid-state systems
    The Journal of Chemical Physics, Vol. 123, No. 13. (2005)
    by Sergei Izvekov, Gregory A Voth
    posted to coarse-graining by softsimu on 2008-03-18 17:34:41 as **
  • Automatic coarse graining of polymers
    Polymer, Vol. 45, No. 11. (May 2004), pp. 3869-3876.
    by Roland Faller
    posted to coarse-graining by softsimu on 2008-03-18 17:23:53 as **
  • Conformational analysis of lipid molecules by self-organizing maps
    The Journal of Chemical Physics, Vol. 126, No. 5. (2007)
    by Teemu Murtola, Mikko Kupiainen, Emma Falck, Ilpo Vattulainen
    posted to coarse-graining by softsimu on 2008-03-08 20:22:22 as **
  • Structure of Spheroidal HDL Particles Revealed by Combined Atomistic and Coarse-Grained Simulations
    Biophys. J., Vol. 94, No. 6. (15 March 2008), pp. 2306-2319.
    by Andrea Catte, James C Patterson, Denys Bashtovyy, Martin K Jones, Feifei Gu, Ling Li, Aldo Rampioni, Durba Sengupta, Timo Vuorela, Perttu Niemela, Mikko Karttunen, Siewert J Marrink, Ilpo Vattulainen, Jere P Segrest
    posted to coarse-graining hdl by softsimu on 2008-03-05 20:55:23 as ** along with 1 person sunnytov
  • Phase behavior of monomeric mixtures and polymer solutions with soft interaction potentials
    The Journal of Chemical Physics, Vol. 114, No. 17. (2001), pp. 7644-7654.
    by CM Wijmans, B Smit, RD Groot
    posted to coarse-graining dpd polymers by softsimu on 2008-02-22 19:35:34 as **
  • Configurational Entropies of Lipids in Pure and Mixed Bilayers from Atomic-Level and Coarse-Grained Molecular Dynamics Simulations
    J. Phys. Chem. B, Vol. 110, No. 31. (10 August 2006), pp. 15602-15614.
    by R Baron, AH Devries, PH Hunenberger, WF Vangunsteren
    posted to coarse-graining by softsimu on 2008-02-18 00:16:58 as **
  • Coarse Grained Model for Semiquantitative Lipid Simulations
    J. Phys. Chem. B, Vol. 108, No. 2. (15 January 2004), pp. 750-760.
    by SJ Marrink, AH Devries, AE Mark
    posted to coarse-graining by softsimu on 2008-02-18 00:16:34 as ** along with 3 people and 1 group Marine choonpeng sunnytov Molecular dynamics in MSU
  • Coarse grain models and the computer simulation of soft materials
    Journal of Physics: Condensed Matter, Vol. 16, No. 15. (2004), pp. R481-R512.
    by Steve O Nielsen, Carlos F Lopez, Goundla Srinivas, Michael L Klein
    posted to coarse-graining by softsimu on 2008-02-08 17:44:08 as ** along with 2 people kaz229 RamuAnandakrishnan
  • Multiscale modeling of lipids and lipid bilayers
    European Biophysics Journal, Vol. 35, No. 1. (19 December 2005), pp. 53-61.
    by Alexander Lyubartsev
    posted to coarse-graining by softsimu on 2008-01-29 01:06:44 as **
  • Calculation of effective interaction potentials from radial distribution functions: A reverse Monte Carlo approach
    Physical Review E, Vol. 52, No. 4. (October 1995), 3730.
    by Alexander P Lyubartsev, Aatto Laaksonen
    posted to coarse-graining imc by softsimu on 2008-01-29 01:06:13 as **
  • Polymorphic Phase Behavior of Cardiolipin Derivatives Studied by Coarse-Grained Molecular Dynamics
    J. Phys. Chem. B, Vol. 111, No. 25. (28 June 2007), pp. 7194-7200.
    by M Dahlberg
    posted to cardiolipin coarse-graining by softsimu on 2008-01-28 15:00:14 as **
  • Coarse-grained transmembrane proteins: hydrophobic matching, aggregation, and their effect on fusion.
    J Phys Chem B, Vol. 110, No. 27. (13 July 2006), pp. 13614-13623.
    by AF Smeijers, K Pieterse, AJ Markvoort, PA Hilbers
    posted to coarse-graining proteins by softsimu on 2008-01-24 00:55:25 as **
  • Pores in bilayer membranes of amphiphilic molecules: Coarse-grained molecular dynamics simulations compared with simple mesoscopic models
    The Journal of Chemical Physics, Vol. 121, No. 4. (2004), pp. 1890-1900.
    by C Loison, M Mareschal, F Schmid
    posted to pores coarse-graining membranes by softsimu on 2008-01-23 06:35:02 as **
  • Multiscale Monte Carlo Algorithm for Simple Fluids
    Physical Review Letters, Vol. 97, No. 19. (2006)
    by AC Maggs
    posted to coarse-graining electrostatics by softsimu on 2008-01-21 22:18:37 as **
  • Coarse-grained model for phospholipid/cholesterol bilayer
    The Journal of Chemical Physics, Vol. 121, No. 18. (2004), pp. 9156-9165.
    by Teemu Murtola, Emma Falck, Michael Patra, Mikko Karttunen, Ilpo Vattulainen
    posted to cholesterol coarse-graining phospholipid by softsimu on 2008-01-21 18:05:17 as **
  • Coarse-grained computations for a micellar system.
    J Chem Phys, Vol. 122, No. 4. (22 January 2005)
    by DI Kopelevich, AZ Panagiotopoulos, IG Kevrekidis
    posted to coarse-graining micelles by softsimu on 2008-01-19 16:06:47 as ** along with 1 person baaden
  • The MARTINI Force Field: Coarse Grained Model for Biomolecular Simulations.
    Journal of Physical Chemistry B (15 June 2007)
    by Siewert J Marrink, HJ Risselada, Serge Yefimov, DP Tieleman, Alex H Vries
    posted to coarse-graining force force-field martini by softsimu on 2008-01-10 14:23:39 as ** along with 4 people and 1 group Marine choonpeng dimka sunnytov Molecular dynamics in MSU
  • Coarse-grained model for phospholipid/cholesterol bilayer employing inverse Monte Carlo with thermodynamic constraints
    J Chem Phys, Vol. 126, No. 7. (2007), 075101.
    by T Murtola, E Falck, M Karttunen, I Vattulainen
    posted to cholesterol coarse-graining imc membranes monte-carlo by softsimu on 2007-12-12 14:20:41 as **
  • Coarse Graining of Nonbonded Degrees of Freedom
    Physical Review Letters, Vol. 98, No. 26. (2007), 267801.
    by H Bock, KE Gubbins, SHL Klapp
    posted to coarse-graining by softsimu on 2007-12-12 03:50:41 as **
  • Classification of protein families and detection of the determinant residues with an improved self-organizing map
    Biochemistry, Vol. 76 (1997), pp. 441-450.
    by MA Andrade, G Casari, C Sander, A Valencia
    posted to coarse-graining som by softsimu on 2007-12-12 01:33:24 as read
  • Simulation of polymer melts. II. From coarse-grained models back to atomistic description
    Acta Polymer., Vol. 49 (1998), pp. 75-79.
    by W Tschöp, K Kremer, O Hahn, J Batoulis, T Bürger
    posted to polymers bibtex-import coarse-graining melts by softsimu on 2007-12-11 21:32:08 as read
  • From Molecular Dynamics to Dissipative Particle Dynamics
    Phys. Rev. Lett., Vol. 83 (1999), pp. 1775-1778.
    by Eirik G Flekkoy, Peter V Coveney
    posted to bibtex-import coarse-graining dpd lattice-boltzmann by softsimu on 2007-12-11 21:32:01 as read
  • Molecular dynamics study of the effect of surfactant on a biomembrane
    J. Phys. Chem. B, Vol. 105 (2001), pp. 5979-5986.
    by S Bandyopadhyay, JC Shelley, ML Klein
    posted to anionic bibtex-import coarse-graining membranes by softsimu on 2007-12-11 21:31:58 as read
  • Interfacing molecular dynamics with continuum dynamics in computer simulation: Toward an application to biological membranes
    IBM J. Res. & Dev., Vol. 45 (2001), pp. 417-424.
    by Ayton, S Barderhagen, P Mcmurtry, D Sulsky, GA Voth
    posted to bibtex-import coarse-graining by softsimu on 2007-12-11 21:31:36 as read
  • On Coarse-graining by the Inverse Monte Carlo method: Dissipative particle dynamics simulations made to a precise tool in soft matter modeling
    Soft Materials, Vol. 1 (2003), pp. 121-137.
    by AP Lyubartsev, M Karttunen, I Vattulainen, A Laaksonen
    posted to bibtex-import coarse-graining dpd by softsimu on 2007-12-11 21:31:36 as read
  • A Mapping of realistic onto abstract polymer models and an application to 2 bisphenol polycarbonates
    Macromolecules, Vol. 27 (1994), pp. 1249-1255.
    by W Paul, N Pistoor
    posted to bibtex-import coarse-graining polymers by softsimu on 2007-12-11 21:31:35 as read
  • Reverse mapping of coarse-grained polyethylene chains from the second nearest neighbor diamond lattice to an atomistic model
    Macromolecules, Vol. 30 (1997)
    by P Doruker, WL Mattice
    posted to bibtex-import coarse-graining polymers by softsimu on 2007-12-11 21:31:33 as read
  • Estimation of Long-Range Interaction in Coarse-Grained Rotational Isomeric State Polyethylene Chains on a High Coordination Lattice
    Macromolecules, Vol. 30 (1997)
    by J Cho, WL Mattice
    posted to bibtex-import coarse-graining polymers by softsimu on 2007-12-11 21:31:33 as read
  • Representation of coarse-grained potentials for polymer simulations
    Mol. Sim., Vol. 28 (2002)
    by WJ Briels, RLC Akkermans
    posted to bibtex-import coarse-graining polymers by softsimu on 2007-12-11 21:31:33 as read
  • A structure-based coarse-grained model for polymer melts
    J. Chem. Phys., Vol. 114 (2001)
    by RLC Akkermans, WJ Briels
    posted to bibtex-import coarse-graining by softsimu on 2007-12-11 21:31:32 as read
    • Du kan hänvisa till den här sidan som: http://www.citeulike.org/user/softsimu/tag/coarse-graining

    Result page: 1 2 Next RIS BibTeX