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shikins bevakningslista [1000+ articles]

Senaste hänvisningarna enligt villkoren för shikins bevakningslista
  • Combinatorial patterns of somatic gene mutations in cancer.
    The FASEB journal : official publication of the Federation of American Societies for Experimental Biology, Vol. 22, No. 8. (August 2008), pp. 2605-2622.
    by CH Yeang, F McCormick, A Levine
    posted to cancer by ramensky on 2008-10-05 17:15:25 as **
  • A stochastic carcinogenesis model incorporating multiple types of genomic instability fitted to colon cancer data.
    Journal of theoretical biology, Vol. 254, No. 2. (21 September 2008), pp. 229-238.
    by MP Little, P Vineis, G Li
    posted to mutation model colon_cancer cin by jfr on 2008-10-01 11:12:54 as ***
  • Protein tyrosine phosphatase receptor-type O (PTPRO) is co-regulated by E2F1 and miR-17-92.
    FEBS letters, Vol. 582, No. 19. (20 August 2008), pp. 2850-2856.
    by X Xu, Y Hong, C Kong, L Xu, J Tan, Q Liang, B Huang, J Lu
    posted to mirna mir17-92 e2f1 by jfr on 2008-10-01 11:10:37 as **
  • Comparison of molecular phenotypes of ductal carcinoma in situ and invasive breast cancer
    Breast Cancer Research, Vol. 10 (05 August 2008), R67.
    by Rulla M Tamimi, Heather J Baer, Jonathan Marotti, Mark Galan, Laurie Galaburda, Yineng Fu, Anne C Deitz, James L Connolly, Stuart J Schnitt, Graham A Colditz, Laura C Collins
    posted to tma subtypes breast_cancer by jfr on 2008-10-01 11:07:53 as ** along with 1 person and 1 group Zephyrus Breast Cancer Reading Club
  • Meta-analysis of gene-expression profiles in breast cancer: toward a unified understanding of breast cancer sub-typing and prognosis signatures
    Breast Cancer Research, Vol. 10 (28 July 2008), R65.
    by Pratyaksha Wirapati, Christos Sotiriou, Susanne Kunkel, Pierre Farmer, Sylvain Pradervand, Benjamin Haibe-Kains, Christine Desmedt, Michail Ignatiadis, Thierry Sengstag, Frederic Schutz, Darlene R Goldstein, Martine Piccart, Mauro Delorenzi
    posted to meta-analysis classification breast_cancer by jfr on 2008-10-01 11:06:31 as read along with 2 people Zephyrus sstaal
  • Molecular targeted therapies for breast cancer treatment
    Breast Cancer Research, Vol. 10 (24 July 2008), 211.
    by Claus M Schlotter, Ulf Vogt, Heike Allgayer, Burkhard Brandt
    posted to review breast_cancer by jfr on 2008-10-01 11:04:45 as ** along with 1 person Zephyrus
  • Oncogenic Ras and Transforming Growth Factor-beta Synergistically Regulate AU-Rich Element-Containing mRNAs during Epithelial to Mesenchymal Transition
    Mol Cancer Res, Vol. 6, No. 7. (1 July 2008), pp. 1124-1136.
    by Cindy L Kanies, Joshua J Smith, Christian Kis, Carl Schmidt, Shawn Levy, Khalid S Khabar, Jason Morrow, Natasha Deane, Dan A Dixon, Daniel R Beauchamp
    posted to tgfb kras colon_cancer au-rich by jfr on 2008-10-01 11:03:47 as ** along with 1 person slevy03
  • Gene expression-based survival prediction in lung adenocarcinoma: a multi-site, blinded validation study.
    Nature medicine (20 July 2008)
    by , Kerby Shedden, Jeremy M G M Taylor, Steven A A Enkemann, Ming-Sound S Tsao, Timothy J J Yeatman, William L L Gerald, Steven Eschrich, Igor Jurisica, Thomas J J Giordano, David E E Misek, Andrew C C Chang, Chang Qi Q Zhu, Daniel Strumpf, Samir Hanash, Frances A A Shepherd, Keyue Ding, Lesley Seymour, Katsuhiko Naoki, Nathan Pennell, Barbara Weir, Roel Verhaak, Christine Ladd-Acosta, Todd Golub, Michael Gruidl, Anupama Sharma, Janos Szoke, Maureen Zakowski, Valerie Rusch, Mark Kris, Agnes Viale, Noriko Motoi, William Travis, Barbara Conley, Venkatraman E E Seshan, Matthew Meyerson, Rork Kuick, Kevin K K Dobbin, Tracy Lively, James W W Jacobson, David G G Beer, Kerby Shedden, Jeremy M G M Taylor, Steven A A Enkemann, Ming-Sound S Tsao, Timothy J J Yeatman, William L L Gerald, Steven Eschrich, Igor Jurisica, Thomas J J Giordano, David E E Misek, Andrew C C Chang, Chang Qi Q Zhu, Daniel Strumpf, Samir Hanash, Frances A A Shepherd, Keyue Ding, Lesley Seymour, Katsuhiko Naoki, Nathan Pennell, Barbara Weir, Roel Verhaak, Christine Ladd-Acosta, Todd Golub, Michael Gruidl, Anupama Sharma, Janos Szoke, Maureen Zakowski, Valerie Rusch, Mark Kris, Agnes Viale, Noriko Motoi, William Travis, Barbara Conley, Venkatraman E E Seshan, Matthew Meyerson, Rork Kuick, Kevin K K Dobbin, Tracy Lively, James W W Jacobson, David G G Beer
    posted to survival_analysis lung_cancer classification by jfr on 2008-10-01 09:58:00 as *** along with 3 people frohike tmmurali giovanni
  • Strategies for discovering novel cancer biomarkers through utilization of emerging technologies
    Nat Clin Prac Oncol, Vol. 5, No. 10. (October 2008), pp. 588-599.
    by Vathany Kulasingam, Eleftherios P Diamandis
    posted to review markers by jfr on 2008-10-01 09:56:57 as ** along with 1 person sg45653
  • Gene-expression profiling in epithelial ovarian cancer.
    Nature clinical practice. Oncology, Vol. 5, No. 10. (October 2008), pp. 577-587.
    by PA Konstantinopoulos, D Spentzos, SA Cannistra
    posted to review ovarian_cancer gene_expression by jfr on 2008-10-01 09:55:06 as **
  • Latest discoveries and trends in translational cancer research: highlights of the 2008 Annual Meeting of the American Association for Cancer Research.
    Technology in cancer research & treatment, Vol. 7, No. 4. (August 2008), pp. 269-277.
    by WC Cho
    posted to meeting_report by jfr on 2008-10-01 09:54:20 as ****
  • A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification
    BMC Bioinformatics, Vol. 9 (22 July 2008), 319.
    by Alexander Statnikov, Lily Wang, Constantin F Aliferis
    posted to methodology classification by jfr on 2008-10-01 09:52:03 as ** along with 4 people rmk mdharsee provero chad_davis
  • The public road to high-quality curated biological pathways.
    Drug discovery today (21 July 2008)
    by Michiel E E Adriaens, Magali Jaillard, Andra Waagmeester, Susan L M L Coort, Alex R R Pico, Chris T A T Evelo
    posted to software review pathway by jfr on 2008-09-30 13:15:39 as *** along with 4 people ptrobajo thomaskelder AlexanderPico jyuh
  • The ontology of biological taxa.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)
    by S Schulz, H Stenzhorn, M Boeker
    posted to ontology by jfr on 2008-09-30 13:14:41 as * along with 1 person jyuh
  • Tissue-specific splicing factor gene expression signatures
    Nucl. Acids Res. (24 July 2008), gkn463.
    by Ana R Grosso, Anita Q Gomes, Nuno L Barbosa-Morais, Sandra Caldeira, Natalie P Thorne, Godfrey Grech, Marieke von Lindern, Maria Carmo-Fonseca
    posted to alternative_splicing by jfr on 2008-09-30 13:11:43 as * along with 2 people cajunsushi aconesa
  • A comparison of normalization techniques for microRNA microarray data.
    Statistical applications in genetics and molecular biology, Vol. 7 (2008)
    by Y Rao, Y Lee, D Jarjoura, AS Ruppert, CG Liu, JC Hsu, JP Hagan
    posted to normalization mirna comparison by jfr on 2008-09-30 11:16:11 as ***
  • Comparative 3'UTR analysis allows identification of regulatory clusters that drive Eph/ephrin expression in cancer cell lines.
    PLoS ONE, Vol. 3, No. 7. (2008)
    by J Winter, S Roepcke, S Krause, EC Müller, A Otto, M Vingron, S Schweiger
    posted to regulation ephb 3utr by jfr on 2008-09-30 11:13:38 as ** along with 1 person maximilianh
  • MeV+R: using MeV as a graphical user interface for Bioconductor applications in microarray analysis
    Genome Biology, Vol. 9 (24 July 2008), R118.
    by Vu T Chu, Raphael Gottardo, Adrian E Raftery, Roger E Bumgarner, Ka Y Yeung
    posted to software bioconductor by jfr on 2008-09-30 11:11:30 as read along with 4 people GeeSharpMinor ptrobajo jyuh verdicchio
  • Analysis of gene expression in a developmental context emphasizes distinct biological leitmotifs in human cancers
    Genome Biology, Vol. 9 (08 July 2008), R108.
    by Kamila Naxerova, Carol J Bult, Anne Peaston, Karen Fancher, Barbara B Knowles, Simon Kasif, Isaac S Kohane
    posted to no-tag by jfr on 2008-09-30 11:10:42 as ****
  • A precisely regulated gene expression cassette potently modulates metastasis and survival in multiple solid cancers.
    PLoS genetics, Vol. 4, No. 7. (2008)
    by K Yu, K Ganesan, LK Tan, M Laban, J Wu, XD Zhao, H Li, CH Leung, Y Zhu, CL Wei, SC Hooi, L Miller, P Tan
    posted to gene_lists classification by jfr on 2008-09-30 11:09:26 as ***
  • Computational biology resources lack persistence and usability.
    PLoS computational biology, Vol. 4, No. 7. (July 2008)
    by S Veretnik, JL Fink, PE Bourne
    posted to no-tag by jfr on 2008-09-29 16:20:38 as ** along with 6 people and 1 group xjlibod dullhunk hpiwowar nuin fgibson maximilianh BergmanLab
  • Discovering high-order patterns of gene expression levels.
    Journal of computational biology : a journal of computational molecular cell biology, Vol. 15, No. 6. (g 2008), pp. 625-637.
    by AK Wong, WH Au, KC Chan
    posted to class_discovery by jfr on 2008-09-29 16:18:40 as **
  • Regulation of the adenomatous polyposis coli gene by the miR-135 family in colorectal cancer.
    Cancer research, Vol. 68, No. 14. (15 July 2008), pp. 5795-5802.
    by R Nagel, C le Sage, B Diosdado, M van der Waal, JA Oude Vrielink, A Bolijn, GA Meijer, R Agami
    posted to mirna mir135 colon_cancer apc by jfr on 2008-09-29 16:15:46 as **
  • Defining a chromatin pattern that characterizes DNA-hypermethylated genes in colon cancer cells.
    Cancer research, Vol. 68, No. 14. (15 July 2008), pp. 5753-5759.
    by KM McGarvey, L Van Neste, L Cope, JE Ohm, JG Herman, W Van Criekinge, KE Schuebel, SB Baylin
    posted to methylation colon_cancer by jfr on 2008-09-29 16:14:44 as **
  • Identification of hypoxia-inducible factor-1 alpha as a novel target for miR-17-92 microRNA cluster.
    Cancer research, Vol. 68, No. 14. (15 July 2008), pp. 5540-5545.
    by A Taguchi, K Yanagisawa, M Tanaka, K Cao, Y Matsuyama, H Goto, T Takahashi
    posted to mirna_target mirna mir17-92 by jfr on 2008-09-29 16:13:47 as **
  • Epidermal growth factor receptor (EGFR) status and K-Ras mutations in colorectal cancer.
    Annals of oncology : official journal of the European Society for Medical Oncology / ESMO (15 July 2008)
    by G Milano, M-C C Etienne-Grimaldi, L Dahan, M Francoual, J-P P Spano, D Benchimol, M Chazal, C Letoublon, T André, F-N N Gilly, J-R R Delpero, J-L L Formento
    posted to kras egfr colon_cancer by jfr on 2008-09-29 16:10:21 as **
  • Cancer-associated genomic regions (CAGRs) and noncoding RNAs: bioinformatics and therapeutic implications
    Mammalian Genome
    by Simona Rossi, Cinzia Sevignani, Stephanie Nnadi, Linda Siracusa, George Calin
    posted to mirna by jfr on 2008-09-29 16:08:44 as *** along with 1 person eskay
  • Overlapping expression of microRNAs in human embryonic colon and colorectal cancer.
    Cell research, Vol. 18, No. 8. (August 2008), pp. 823-833.
    by M Monzo, A Navarro, E Bandres, R Artells, I Moreno, B Gel, R Ibeas, J Moreno, F Martinez, T Diaz, A Martinez, O Balagué, J Garcia-Foncillas
    posted to stem mirna mir17-92 colon_cancer by jfr on 2008-09-29 15:33:37 as *****
  • Seeking a New Biology through Text Mining
    Cell, Vol. 134, No. 1. (11 July 2008), pp. 9-13.
    by Andrey Rzhetsky, Michael Seringhaus, Mark Gerstein
    posted to text-mining by jfr on 2008-09-29 15:32:22 as ** along with 8 people yas icq242500260 pzoot jyuh bootsy fgibson dullhunk tharris
  • Probing the Extent of Randomness in Protein Interaction Networks
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000114.
    by Joseph Ivanic, Anders Wallqvist, Jaques Reifman
    posted to protein_interaction by jfr on 2008-09-29 15:30:40 as *** along with 2 people Ema kluck
  • Nonnegative Matrix Factorization: An Analytical and Interpretive Tool in Computational Biology
    PLoS Comput Biol, Vol. 4, No. 7. (25 July 2008), e1000029.
    by Karthik Devarajan
    posted to review nmf by jfr on 2008-09-29 15:29:09 as read along with 8 people aramesh2 roys bayesian bpcusack cabbagesofdoom luispedro jyuh mikaelhuss
  • Global mRNA changes in microarray experiments
    Nature Biotechnology, Vol. 26, No. 7., pp. 741-742.
    by Matthew A Hannah, Henning Redestig, Andrea Leisse, Lothar Willmitzer
    posted to quality_control microarray_technology by jfr on 2008-09-29 15:26:04 as read along with 3 people inesdesantiago GeeSharpMinor jyuh
  • Young age at diagnosis correlates with worse prognosis and defines a subset of breast cancers with shared patterns of gene expression.
    Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 26, No. 20. (10 July 2008), pp. 3324-3330.
    by CK Anders, DS Hsu, G Broadwater, CR Acharya, JA Foekens, Y Zhang, Y Wang, PK Marcom, JR Marks, PG Febbo, JR Nevins, A Potti, KL Blackwell
    posted to meta-analysis breast_cancer by jfr on 2008-09-29 15:22:04 as ** along with 1 person Zephyrus
  • VisANT: an integrative framework for networks in systems biology
    Brief Bioinform (7 May 2008), bbn020.
    by Zhenjun Hu, Evan S Snitkin, Charles Delisi
    posted to visualization software network by jfr on 2008-09-29 15:19:53 as ** along with 7 people and 1 group druvus sameetmehta bootsy maralena jyuh maoxizeng srp33 Bioinformatics
  • Short time-series microarray analysis: Methods and challenges
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Xuewei Wang, Ming Wu, Zheng Li, Christina Chan
    posted to time-course by jfr on 2008-09-29 15:18:48 as ** along with 1 person GeeSharpMinor
  • A Probe-Density Based Analysis Method for Array CGH data: Simulation, Normalization and Centralization.
    Bioinformatics (Oxford, England) (4 July 2008)
    by Hung-I Harry I Chen, Fang-Han H Hsu, Yuan Jiang, Mong-Hsun H Tsai, Pan-Chyr C Yang, Paul S S Meltzer, Eric Y Y Chuang, Yidong Chen
    posted to normalization array-cgh by jfr on 2008-09-29 15:17:30 as ** along with 3 people talponer nuin ellakat
  • Bayesian Weibull tree models for survival analysis of clinico-genomic data.
    Statistical methodology, Vol. 5, No. 3. (2008), pp. 238-262.
    by Jennifer Clarke, Mike West
    posted to survival_analysis statistics by jfr on 2008-09-29 15:14:30 as ****
  • Relationship of circulating tumor cells to tumor response, progression-free survival, and overall survival in patients with metastatic colorectal cancer.
    Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 26, No. 19. (1 July 2008), pp. 3213-3221.
    by SJ Cohen, CJ Punt, N Iannotti, BH Saidman, KD Sabbath, NY Gabrail, J Picus, M Morse, E Mitchell, MC Miller, GV Doyle, H Tissing, LW Terstappen, NJ Meropol
    posted to colon_cancer circulating_tumor_cells by jfr on 2008-09-29 15:12:55 as **
  • MAID : An effect size based model for microarray data integration across laboratories and platforms
    BMC Bioinformatics, Vol. 9 (10 July 2008), 305.
    by Ivan Borozan, Limin Chen, Bryan Paeper, Jenny E Heathcote, Aled M Edwards, Michael Katze, Zhaolei Zhang, Ian D Mcgilvray
    posted to meta-analysis integration by jfr on 2008-09-29 15:11:08 as *** along with 3 people talponer jyuh GeeSharpMinor
  • Tiling array-CGH for the assessment of genomic similarities among synchronous unilateral and bilateral invasive breast cancer tumor pairs
    BMC Clinical Pathology, Vol. 8 (10 July 2008), 6.
    by Sara Brommesson, Goran Jonsson, Carina Strand, Dorthe Grabau, Per Malmstrom, Markus Ringner, Marten Ferno, Ingrid Hedenfalk
    posted to tiling_array breast_cancer by jfr on 2008-09-29 15:09:59 as * along with 1 person Zephyrus
  • Metastatic susceptibility locus, an 8p hot-spot for tumour progression disrupted in colorectal liver metastases: 13 candidate genes examined at the DNA, mRNA and protein level.
    BMC Cancer, Vol. 8 (01 July 2008), 187.
    by Donia P Macartney-Coxson, Kylie A Hood, Hong-Jun Shi, Teresa Ward, Anna Wiles, Rosemary O'Connor, David A Hall, Rod A Lea, Janice A Royds, Richard S Stubbs, Serena Rooker
    posted to colon_cancer 8q24 by jfr on 2008-09-29 15:08:28 as **
  • Assessing the functional structure of genomic data.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)
    by C Huttenhower, OG Troyanskaya
    posted to integration functional_analysis by jfr on 2008-09-29 15:05:19 as ** along with 1 person jyuh
  • Unraveling transcriptional regulatory programs by integrative analysis of microarray and transcription factor binding data.
    Bioinformatics (Oxford, England), Vol. 24, No. 17. (1 September 2008), pp. 1874-1880.
    by H Li, M Zhan
    posted to tfbs regulation microarray_analysis integration by jfr on 2008-09-29 14:23:18 as ** along with 3 people icecrown ealloza m9array
  • Clinical relevance of KRAS mutation detection in metastatic colorectal cancer treated by Cetuximab plus chemotherapy
    British Journal of Cancer, Vol. aop, No. current. (20 March 2007)
    by F Di Fiore, F Blanchard, F Charbonnier, F Le Pessot, A Lamy, MP Galais, L Bastit, A Killian, R Sesboue, JJ Tuech, AM Queuniet, B Paillot, JC Sabourin, F Michot, P Michel, T Frebourg
    posted to therapy mutations kras colon_cancer by jfr on 2008-09-29 14:19:08 as **
  • Electrostatic readout of DNA microarrays with charged microspheres
    Nature Biotechnology, Vol. 26, No. 7. (29 June 2008), pp. 825-830.
    by Nathan G Clack, Khalid Salaita, Jay T Groves
    posted to microarray_technology by jfr on 2008-09-29 11:15:29 as * along with 1 person jyuh
  • Effect of polymorphisms within probe-target sequences on olignonucleotide microarray experiments
    Nucl. Acids Res., Vol. 36, No. 13. (1 August 2008), pp. 4417-4423.
    by David Benovoy, Tony Kwan, Jacek Majewski
    posted to snp probe_design by jfr on 2008-09-29 11:14:24 as ** along with 2 people GeeSharpMinor caseybrown
  • Construction of a cancer-perturbed protein-protein interaction network for discovery of apoptosis drug targets
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Liang H Chu, Bor S Chen
    posted to systems_biology protein_interaction network drug_discovery by jfr on 2008-09-29 11:12:02 as **** along with 3 people reyez renatomilani jyuh
  • Strong position-dependent effects of sequence mismatches on signal ratios measured using long oligonucleotide microarrays
    BMC Genomics, Vol. 9 (03 July 2008), 317.
    by Catriona Rennie, Harry A Noyes, Stephen J Kemp, Helen Hulme, Andy Brass, David C Hoyle
    posted to two-color by jfr on 2008-09-26 16:48:19 as ** along with 1 person GeeSharpMinor
  • Estimation and testing for the effect of a genetic pathway on a disease outcome using logistic kernel machine regression via logistic mixed models
    BMC Bioinformatics, Vol. 9 (24 June 2008), 292.
    by Dawei Liu, Debashis Ghosh, Xihong Lin
    posted to pathway_analysis by jfr on 2008-09-26 16:19:49 as *** along with 2 people dolchan ptrobajo
  • Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease
    BMC Bioinformatics, Vol. 9 (24 June 2008), 291.
    by Rob Jelier, Peter, Ellen Sterrenburg, Johan T den Dunnen, Gert-Jan B van Ommen, Jan A Kors, Barend Mons
    posted to text-mining meta-analysis by jfr on 2008-09-26 16:18:14 as ** along with 2 people talponer GeeSharpMinor
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