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shikins library [240 articles]

Senaste artiklarna i shikins bibliotek.
  • Development of a large-scale chemogenomics database to improve drug candidate selection and to understand mechanisms of chemical toxicity and action.
    J Biotechnol, Vol. 119, No. 3. (29 September 2005), pp. 219-244.
    by B Ganter, S Tugendreich, CI Pearson, E Ayanoglu, S Baumhueter, KA Bostian, L Brady, LJ Browne, JT Calvin, GJ Day, N Breckenridge, S Dunlea, BP Eynon, LM Furness, J Ferng, MR Fielden, SY Fujimoto, L Gong, C Hu, R Idury, MS Judo, KL Kolaja, MD Lee, C McSorley, JM Minor, RV Nair, G Natsoulis, P Nguyen, SM Nicholson, H Pham, AH Roter, D Sun, S Tan, S Thode, AM Tolley, A Vladimirova, J Yang, Z Zhou, K Jarnagin
    posted to iconix database by shikin on 2008-07-03 16:39:54 as ** along with 1 person jdiggans
  • The liver pharmacological and xenobiotic gene response repertoire
    Mol Syst Biol, Vol. 4 (25 March 2008)
    by Georges Natsoulis, Cecelia I Pearson, Jeremy Gollub, Eynon, Joe Ferng, Ramesh Nair, Radha Idury, May D Lee, Mark R Fielden, Richard J Brennan, Alan H Roter, Kurt Jarnagin
    posted to toxicology iconix gene_expression by shikin on 2008-07-03 15:26:40 as ** along with 5 people and 1 group jyuh zwang caseybrown aubinhon ptrobajo Integrative_biology_behavior
  • MGED standards: work in progress.
    Omics : a journal of integrative biology, Vol. 10, No. 2. (2006), pp. 138-144.
    by CA Ball, A Brazma
    posted to microarray mged by shikin on 2008-06-17 14:32:02 as ** along with 1 person yggdrasil
  • The MGED Ontology: a resource for semantics-based description of microarray experiments
    Bioinformatics, Vol. 22, No. 7. (1 April 2006), pp. 866-873.
    by Patricia L Whetzel, Helen Parkinson, Helen C Causton, Liju Fan, Jennifer Fostel, Gilberto Fragoso, Laurence Game, Mervi Heiskanen, Norman Morrison, Philippe Rocca-Serra, Susanna-Assunta Sansone, Chris Taylor, Joseph White, Christian J Stoeckert
    posted to microarray mged by shikin on 2008-06-17 14:31:44 as ** along with 2 people jfr dansullivanblk
  • Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.
    Nat Genet, Vol. 29, No. 4. (December 2001), pp. 365-371.
    by A Brazma, P Hingamp, J Quackenbush, G Sherlock, P Spellman, C Stoeckert, J Aach, W Ansorge, CA Ball, HC Causton, T Gaasterland, P Glenisson, FC Holstege, IF Kim, V Markowitz, JC Matese, H Parkinson, A Robinson, U Sarkans, S Schulze-Kremer, J Stewart, R Taylor, J Vilo, M Vingron
    posted to microarray by shikin on 2008-06-17 14:07:45 as ** along with 7 people and 3 groups irenas setar fisherp jeremymiller aconesa sgoetz katerinakal GeneGo dbk-lab GeschwindLab
  • Statistical tests for differential expression in cDNA microarray experiments
    Genome Biology, Vol. 4, No. 4. (2003)
    by Xiangqin Cui, Gary Churchill
    posted to statistics microarray gene_expression by shikin on 2008-06-04 18:29:30 as ** along with 2 people heliopais waszak
  • Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data
    Nucleic Acids Research, Vol. 33, No. 20. (2005), pp. e175-e175.
    by Manhong Dai, Pinglang Wang, Andrew D Boyd, Georgi Kostov, Brian Athey, Edward G Jones, William E Bunney, Richard M Myers, Terry P Speed, Huda Akil, Stanley J Watson, Fan Meng
    posted to microarray affy by shikin on 2008-06-02 15:09:44 as ** along with 7 people and 2 groups bertelsen pcahan1 frohike incovoma nicholso heliopais Montrachet GeneGo Bioinformatics
  • Evidence for dynamically organized modularity in the yeast protein-protein interaction network
    Nature, Vol. 430, No. 6995. (01 July 2004), pp. 88-93.
    by Jing-Dong J Han, Nicolas Bertin, Tong Hao, Debra S Goldberg, Gabriel F Berriz, Lan V Zhang, Denis Dupuy, Albertha JM Walhout, Michael E Cusick, Frederick P Roth, Marc Vidal
    posted to network by shikin on 2008-05-20 14:57:26 as ** along with 23 people and 2 groups ksiek kintoki ellakat frohike carlk dragonrez lfriedl balajis yoh j3xucite koller mikaelhuss ruvido gcalda grahamc iris_2001 lpfernandes winterschlaefer Evangelia cdeane shung phoenixzxl stefanoallesina GeneGo kdl
  • Systems biology for cancer.
    Curr Opin Oncol, Vol. 17, No. 1. (January 2005), pp. 44-48.
    by IG Khalil, C Hill
    posted to systems_biology network by shikin on 2008-05-19 18:11:38 as ** along with 1 person and 1 group wnpx GeneGo
  • Computational systems biology.
    Nature, Vol. 420, No. 6912. (14 November 2002), pp. 206-210.
    by H Kitano
    posted to systems_biology by shikin on 2008-05-19 17:14:50 as ***** along with 14 people and 5 groups irenas rhem1224 lyongu eweaver wnpx ddahlem shivakumar3_14 os252 dgront mmt livingthingdan agileproteomics grahamc maburkitt GeneGo dbk-lab TCR_Signaling SysbioMPI-TCells livingthing
  • notes Apoptosis in established and healing psoriasis.
    Dermatology (Basel, Switzerland), Vol. 200, No. 4. (2000), pp. 314-316.
    by M Laporte, P Galand, D Fokan, C de Graef, M Heenen
    posted to psoriasis by shikin on 2008-05-15 14:46:30 as **
  • notes The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
    Nat Biotech, Vol. 24, No. 9. (2006), pp. 1151-1161.
    posted to microarray by shikin on 2008-05-15 13:28:34 as ** along with 9 people jyuh caseybrown giovenko kentsis jfr jdiggans qmwwallace cberry shigepong
  • notes Genome-wide associations of gene expression variation in humans.
    PLoS Genet, Vol. 1, No. 6. (December 2005)
    by BE Stranger, MS Forrest, AG Clark, MJ Minichiello, S Deutsch, R Lyle, S Hunt, B Kahl, SE Antonarakis, S Tavaré, P Deloukas, ET Dermitzakis
    posted to gene_expression by shikin on 2008-05-15 12:19:43 as ** along with 7 people and 3 groups adepace rdiaz qfwills noano ashandanj jo_davies cisevol Bioinformatics EisenLab cis-regulatory-evolution
  • Probe set algorithms: Is there a rational best bet?
    BMC Bioinformatics, Vol. 7 (30 August 2006), 395.
    by Jinwook Seo, Eric P Hoffman
    posted to normalization microarray affy by shikin on 2008-05-06 17:59:11 as ** along with 4 people bertelsen jfr ghattem rschulz
  • Evaluating different methods of microarray data normalization
    BMC Bioinformatics, Vol. 7 (23 October 2006), 469.
    by Andre Fujita, Joao R Sato, Leonardo O Rodrigues, Carlos E Ferreira, Mari C Sogayar
    posted to normalization microarray by shikin on 2008-05-06 17:16:00 as ** along with 1 person jfr
  • notes JAMA patient page. Crohn disease.
    JAMA : the journal of the American Medical Association, Vol. 299, No. 14. (9 April 2008)
    by JM Torpy, C Lynm, RM Glass
    posted to crohn by shikin on 2008-05-06 11:55:18 as **
  • Reproducibility of microarray data: a further analysis of microarray quality control (MAQC)data
    BMC Bioinformatics, Vol. 8 (25 October 2007), 412.
    by James Chen, Huey-Miin Hsueh, Robert Delongchamp, Chien-Ju Lin, Chen-An Tsai
    posted to microarray by shikin on 2008-05-05 16:27:26 as ** along with 5 people jyuh giovenko jfr shigepong GeeSharpMinor
  • notes High density synthetic oligonucleotide arrays.
    Nat Genet, Vol. 21, No. 1 Suppl. (January 1999), pp. 20-24.
    by RJ Lipshutz, SP Fodor, TR Gingeras, DJ Lockhart
    posted to microarray history by shikin on 2008-05-05 15:33:42 as ** along with 2 people and 1 group jeremymiller incovoma GeschwindLab
  • Gene expression studies using microarrays: principles, problems, and prospects.
    Advances in physiology education, Vol. 26, No. 1-4. (December 2002), pp. 256-270.
    by D Murphy
    posted to microarray gene_expression by shikin on 2008-05-05 14:27:27 as **
  • Quantitative monitoring of gene expression patterns with a complementary DNA microarray.
    Science, Vol. 270, No. 5235. (20 October 1995), pp. 467-470.
    by M Schena, D Shalon, RW Davis, PO Brown
    posted to microarray history by shikin on 2008-05-05 13:03:11 as ** along with 8 people and 1 group frohike dragonrez Dax42 stsaft fisherp jeremymiller tvdbulck talponer GeschwindLab
  • Noise in Gene Expression: Origins, Consequences, and Control
    Science, Vol. 309, No. 5743. (23 September 2005), pp. 2010-2013.
    by Jonathan M Raser, Erin K O'Shea
    posted to microarray gene_association by shikin on 2008-05-05 12:38:49 as **** along with 10 people and 2 groups dylanwalker rklancer monod dayjm xico nirfriedman koller mhucka margaritis suizan GeneGo WetBiology
  • notes How noisy and replicable are DNA microarry data?
    International journal of bioinformatics research and applications, Vol. 1, No. 1. (2005), pp. 31-50.
    by S Sundaresh, SP Hung, GW Hatfield, P Baldi
    posted to microarray by shikin on 2008-05-05 12:31:13 as **
  • Network Theory to Understand Microarray Studies of Complex Diseases
    Current Molecular Medicine, Vol. 6, No. 6. (September 2006), pp. 695-701.
    by Benson, Mikael, Breitling, Rainer
    posted to systems_biology network gene_expression by shikin on 2008-05-05 12:28:43 as read along with 3 people iris_2001 karfunkel hedbag
  • notes Gene annotation and pathway mapping in KEGG.
    Methods in molecular biology (Clifton, N.J.), Vol. 396 (2007), pp. 71-91.
    by KF Aoki-Kinoshita, M Kanehisa
    posted to thesis onthology by shikin on 2008-05-04 19:10:22 as **
  • Network motifs: simple building blocks of complex networks.
    Science, Vol. 298, No. 5594. (25 October 2002), pp. 824-827.
    by R Milo, S Shen-Orr, S Itzkovitz, N Kashtan, D Chklovskii, U Alon
    posted to network by shikin on 2008-05-04 17:45:59 as ** along with 38 people and 8 groups renatomilani subhacom cmor carlk pbull i-stevenson applesnow camster korakot aalibes ChaTo imouthesmp Borelli lfriedl alexg balicea tny ssb wnpx ddahlem cmm donade neveaire griota gurkanbebek jtaylor josepe iris_2001 michaelmampaey rebeccamancy karfunkel lenov Evangelia roys tfogal zibuyu maralena stefanoallesina GeneGo Philosophy_of_Information dbk-lab Blog_and_Wiki_Research kdl FAB-lab ColDyn ADMiRes
  • notes Genomic analysis of essentiality within protein networks.
    Trends Genet, Vol. 20, No. 6. (June 2004), pp. 227-231.
    by H Yu, D Greenbaum, H Xin Lu, X Zhu, M Gerstein
    posted to thesis network by shikin on 2008-05-04 17:40:25 as ** along with 3 people and 1 group niolis nickluscombe grahamc EBI-regulation
  • notes The large-scale organization of metabolic networks.
    Nature, Vol. 407, No. 6804. (5 October 2000), pp. 651-654.
    by H Jeong, B Tombor, R Albert, ZN Oltvai, AL Barabási
    posted to thesis systems_biology network metabolomics by shikin on 2008-05-04 17:10:53 as ** along with 21 people and 2 groups camster snuppepuppan jpmague mague alexisgallagher bjorns Borelli shivaram lfriedl cmmorel alexg Shirakawa ddahlem gcalda grahamc jrbanga karfunkel Evangelia shung pmendes stefanoallesina dbk-lab kdl
  • Technological platforms for microarray gene expression profiling.
    Advances in experimental medicine and biology, Vol. 593 (2007), pp. 12-18.
    by S Mandruzzato
    posted to microarray by shikin on 2008-05-04 15:13:54 as *****
  • Computational analysis of microarray data.
    Nat Rev Genet, Vol. 2, No. 6. (June 2001), pp. 418-427.
    by J Quackenbush
    posted to statistics microarray gene_expression by shikin on 2008-05-04 14:33:40 as *** along with 5 people and 1 group frohike bryank chad_davis atombjut waghsk GeneGo
  • Systems biology and new technologies enable predictive and preventative medicine.
    Science, Vol. 306, No. 5696. (22 October 2004), pp. 640-643.
    by L Hood, JR Heath, ME Phelps, B Lin
    posted to systems_biology hood by shikin on 2008-05-04 13:34:48 as ** along with 5 people and 1 group AlexanderPico wnpx cconboy raiyar maburkitt GeneGo
  • Regulatory gene networks and the properties of the developmental process.
    Proc Natl Acad Sci U S A, Vol. 100, No. 4. (18 February 2003), pp. 1475-1480.
    by EH Davidson, DR McClay, L Hood
    posted to systems_biology hood by shikin on 2008-05-04 13:32:41 as ** along with 3 people mjoach nsamways margaritis
  • Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae.
    Molecular & cellular proteomics : MCP, Vol. 1, No. 4. (April 2002), pp. 323-333.
    by TJ Griffin, SP Gygi, T Ideker, B Rist, J Eng, L Hood, R Aebersold
    posted to systems_biology by shikin on 2008-05-04 13:30:30 as ** along with 1 group GeneGo
  • Integrated genomic and proteomic analyses of a systematically perturbed metabolic network.
    Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934.
    by T Ideker, V Thorsson, JA Ranish, R Christmas, J Buhler, JK Eng, R Bumgarner, DR Goodlett, R Aebersold, L Hood
    posted to systems_biology hood by shikin on 2008-05-04 13:29:16 as ***** along with 10 people and 3 groups thomaskelder snuppepuppan BioGeek dragonrez bpb okarsligil opheliav wnpx gurkanbebek raiyar GeneGo Bioinformatics steinmetzlab
  • Global properties of biological networks.
    Drug discovery today, Vol. 10, No. 5. (1 March 2005), pp. 365-372.
    by MG Grigorov
    posted to systems_biology network by shikin on 2008-05-04 13:22:48 as **** along with 1 group GeneGo
  • Systems biology, metabolic modelling and metabolomics in drug discovery and development
    Drug Discovery Today, Vol. 11, No. 23-24. (December 2006), pp. 1085-1092.
    by Douglas B Kell
    posted to systems_biology metabolomics by shikin on 2008-05-04 13:20:34 as ** along with 8 people and 2 groups alanrw irenas nicklynch alexg dullhunk mhucka raiyar fishtank GeneGo steinmetzlab
  • A novel method for visualizing nuclear hormone receptor networks relevant to drug metabolism.
    Drug metabolism and disposition: the biological fate of chemicals, Vol. 33, No. 3. (March 2005), pp. 474-481.
    by S Ekins, E Kirillov, EA Rakhmatulin, T Nikolskaya
    posted to toxicology systems_biology network genego by shikin on 2008-05-04 13:19:07 as ** along with 1 group GeneGo
  • Pathway mapping tools for analysis of high content data.
    Methods in molecular biology (Clifton, N.J.), Vol. 356 (2007), pp. 319-350.
    by S Ekins, Y Nikolsky, A Bugrim, E Kirillov, T Nikolskaya
    posted to systems_biology pathway-analysis genego by shikin on 2008-05-04 13:09:52 as *** along with 2 people and 1 group AlexanderPico thomaskelder GeneGo
  • Algorithms for network analysis in systems-ADME/Tox using the MetaCore and MetaDrug platforms
    Xenobiotica, Vol. 36, No. 10-11. (8220), pp. 877-901.
    by Ekins, , Bugrim, , Brovold, , Kirillov, , Nikolsky, , Rakhmatulin, , Sorokina, , Ryabov, , Serebryiskaya, , Melnikov, , Metz, , Nikolskaya,
    posted to toxicology systems_biology network method genego by shikin on 2008-05-04 13:08:06 as ** along with 1 group GeneGo
  • Atherosclerosis and liver inflammation induced by increased dietary cholesterol intake: a combined transcriptomics and metabolomics analysis
    Genome Biology, Vol. 8, No. 9. (2007)
    by Robert Kleemann, Lars Verschuren, Marjan van Erk, Yuri Nikolsky, Nicole Cnubben, Elwin Verheij, Age Smilde, Henk Hendriks, Susanne Zadelaar, Graham Smith, Valery Kaznacheev, Tatiana Nikolskaya, Anton Melnikov, Eva H Camejo, Jan van der Greef, Ben van Ommen, Teake Kooistra
    posted to systems_biology genego by shikin on 2008-05-04 13:04:56 as ** along with 2 people and 1 group aconesa vinithepooh GeneGo
  • Modelling microtubule patterns
    Nature Cell Biology, Vol. 8, No. 11., pp. 1204-1211.
    by Eric Karsenti, François Nédélec, Thomas Surrey
    posted to systems_biology nature_sysbio_08 by shikin on 2008-05-04 12:30:25 as *** along with 4 people and 2 groups rubendrr rahulthadani qwermish softsimu GeneGo cytoskeleton-and-afm
  • Data-driven modelling of signal-transduction networks
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 11., pp. 820-828.
    by Kevin A Janes, Michael B Yaffe
    posted to systems_biology nature_sysbio_08 by shikin on 2008-05-04 12:29:57 as *** along with 4 people and 2 groups jyuh cdppublications winterschlaefer cdpwebadmin GeneGo CDP
  • Physicochemical modelling of cell signalling pathways
    Nature Cell Biology, Vol. 8, No. 11., pp. 1195-1203.
    by Bree B Aldridge, John M Burke, Douglas A Lauffenburger, Peter K Sorger
    posted to systems_biology nature_sysbio_08 by shikin on 2008-05-04 12:29:25 as *** along with 5 people and 5 groups mattjb mhucka jaycopeland cdppublications burkey GeneGo ComplexAdaptiveSystems DSTO-CAS SorgerLab CDP
  • Linking data to models: data regression
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 11. (27 September 2006), pp. 813-819.
    by Khuloud Jaqaman, Gaudenz Danuser
    posted to systems_biology nature_sysbio_08 by shikin on 2008-05-04 12:29:10 as *** along with 5 people and 3 groups jxl nickluscombe glyg rahulthadani cdpwebadmin GeneGo EC EBI-regulation
  • Collecting and organizing systematic sets of protein data
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 11., pp. 803-812.
    by John G Albeck, Gavin Macbeath, Forest M White, Peter K Sorger, Douglas A Lauffenburger, Suzanne Gaudet
    posted to systems_biology nature_sysbio_08 by shikin on 2008-05-04 12:28:47 as *** along with 5 people and 3 groups balajis massivemayhem jaycopeland cdppublications cdpwebadmin GeneGo SorgerLab CDP
  • Modelling data across labs, genomes, space and time
    Nature Cell Biology, Vol. 8, No. 11., pp. 1190-1194.
    by Jason R Swedlow, Suzanna E Lewis, Ilya G Goldberg
    posted to systems_biology nature_sysbio_08 by shikin on 2008-05-04 12:28:28 as *** along with 4 people and 1 group jfr glyg MrData scienbox GeneGo
  • Linking publication, gene and protein data
    Nat Cell Biol, Vol. 8, No. 11. (November 2006), pp. 1183-1189.
    by Paul Kersey, Rolf Apweiler
    posted to systems_biology nature_sysbio_08 by shikin on 2008-05-04 12:28:11 as *** along with 2 people and 2 groups jfr giovanni GeneGo GeschwindLab
  • Mapping and sequencing of structural variation from eight human genomes
    Nature, Vol. 453, No. 7191., pp. 56-64.
    by Jeffrey M Kidd, Gregory M Cooper, William F Donahue, Hillary S Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, Alice N Yamada, Peter Tsang, Tera L Newman, Eray Tüzün, Ze Cheng, Heather M Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin Mckernan, Lin Chen, Maika Malig, Joshua D Smith, Joshua M Korn, Steven A Mccarroll, David A Altshuler, Daniel A Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A Nickerson, James C Mullikin, Richard K Wilson, Laurakay Bruhn, Maynard V Olson, Rajinder Kaul, Douglas R Smith, Evan E Eichler
    posted to systems_biology genomics by shikin on 2008-05-04 12:12:12 as ** along with 14 people and 1 group chrisamiller maximilianh vplagnol kintoki chad_davis Ema hpaces aprasad kaniko psique balicea djkt dchughes bpb GeneGo
  • Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data
    Bioinformatics, Vol. 22, No. 13. (1 July 2006), pp. 1665-1667.
    by Pan, Fei, Kamath, Kiran, Pulapura, Sudip, Achar, Avinash, Nunez-Iglesias, Juan, Huang, Yu, Yan, Xifeng, Han, Jiawei, Hu, Haiyan, Xu, Min, Hu, Jianjun, Zhou, Xianghong Jasmine
    posted to statistics gene_expression by shikin on 2008-04-22 18:45:50 as **
  • Coupled two-way clustering analysis of gene microarray data.
    Proc Natl Acad Sci U S A, Vol. 97, No. 22. (24 October 2000), pp. 12079-12084.
    by G Getz, E Levine, E Domany
    posted to clustering statistics by shikin on 2008-04-21 19:30:55 as ** along with 3 people and 1 group tvdbulck wnpx caporaso biomedical-nlp
  • Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays.
    Proc Natl Acad Sci U S A, Vol. 96, No. 12. (8 June 1999), pp. 6745-6750.
    by U Alon, N Barkai, DA Notterman, K Gish, S Ybarra, D Mack, AJ Levine
    posted to clustering statistics by shikin on 2008-04-21 17:12:57 as ** along with 5 people ggrot bedo sutovsky frohike jo_davies
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