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rdiazs library [269 articles]

Senaste artiklarna i rdiazs bibliotek.
  • Copy-number analysis goes more than skin deep
    Nature Genetics, Vol. 40, No. 1., pp. 5-6.
    by Steven A Mccarroll
    posted to no-tag by rdiaz on 2008-06-24 13:57:55 as **
  • Estimating an oncogenetic tree when false negatives and positives are present
    Mathematical Biosciences, Vol. 176, No. 2. (April 2002), pp. 219-236.
    by Aniko Szabo, Kenneth Boucher
    posted to no-tag by rdiaz on 2007-12-26 13:17:05 as **
  • Chromosome abnormalities in ovarian adenocarcinoma: III. Using breakpoint data to infer and test mathematical models for oncogenesis
    Genes, Chromosomes and Cancer, Vol. 28, No. 1. (2000), pp. 106-120.
    by Richard Simon, Richard Desper, Christos H Papadimitriou, Amy Peng, David S Alberts, Raymond Taetle, Jeffrey M Trent, Alejandro A Schäffer
    posted to no-tag by rdiaz on 2007-12-26 13:16:47 as **
  • Weighted clustering of called array CGH data.
    Biostatistics (22 December 2007)
    by Wessel N N Van Wieringen, Mark A A Van De Wiel, Bauke Ylstra
    posted to no-tag by rdiaz on 2007-12-26 10:54:49 as **
  • Construction of tree models for pathogenesis of nasopharyngeal carcinoma.
    Genes Chromosomes Cancer, Vol. 40, No. 4. (August 2004), pp. 307-315.
    by Z Huang, R Desper, AA Schäffer, Z Yin, X Li, K Yao
    posted to no-tag by rdiaz on 2007-12-26 10:51:45 as **
  • A Tumor Progression Model for Hepatocellular Carcinoma: Bioinformatic Analysis of Genomic Data
    Gastroenterology, Vol. 131, No. 4. (October 2006), pp. 1262-1270.
    by Terence C Poon, Nathalie Wong, Paul B Lai, Magnus Rattray, Philip J Johnson, Joseph J Sung
    posted to no-tag by rdiaz on 2007-12-26 10:50:37 as **
  • Inferring a tumor progression model for neuroblastoma from genomic data.
    J Clin Oncol, Vol. 23, No. 29. (10 October 2005), pp. 7322-7331.
    by S Bilke, QR Chen, F Westerman, M Schwab, D Catchpoole, J Khan
    posted to no-tag by rdiaz on 2007-12-26 10:38:13 as **
  • A comprehensive continuous-time model for the appearance of CGH signal due to chromosomal missegregations during mitosis.
    Math Biosci, Vol. 197, No. 1. (September 2005), pp. 67-87.
    by R Desper, MJ Difilippantonio, T Ried, AA Schäffer
    posted to no-tag by rdiaz on 2007-12-26 10:37:50 as **
  • DPRml: distributed phylogeny reconstruction by maximum likelihood.
    Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 969-974.
    by TM Keane, TJ Naughton, SA Travers, JO McInerney, GP McCormack
    posted to no-tag by rdiaz on 2007-12-26 10:34:20 as ** along with 1 person knaseanka
  • New probabilistic network models and algorithms for oncogenesis.
    J Comput Biol, Vol. 13, No. 4. (May 2006), pp. 853-865.
    by M Hjelm, M Höglund, J Lagergren
    posted to no-tag by rdiaz on 2007-12-26 10:33:26 as ** along with 1 person jfr
  • SDM: A Fast Distance-Based Approach for (Super)Tree Building in Phylogenomics
    Systematic Biology, Vol. 55, No. 5. (October 2006), pp. 740-755.
    by Criscuolo, Alexis, Berry, Vincent, Douzery, Emmanuel, Gascuel, Olivier
    posted to no-tag by rdiaz on 2007-12-26 10:32:29 as **
  • Using PQ structures for genomic rearrangement phylogeny.
    J Comput Biol, Vol. 13, No. 10. (December 2006), pp. 1685-1700.
    by L Parida
    posted to no-tag by rdiaz on 2007-12-26 10:31:08 as **
  • Construction and analysis of tree models for chromosomal classification of diffuse large B-cell lymphomas.
    World J Gastroenterol, Vol. 13, No. 11. (21 March 2007), pp. 1737-1742.
    by HY Jiang, ZX Huang, XF Zhang, R Desper, T Zhao
    posted to no-tag by rdiaz on 2007-12-26 10:30:01 as **
  • Maximum likelihood estimation of oncogenetic tree models.
    Biostatistics, Vol. 5, No. 4. (October 2004), pp. 545-556.
    by A von Heydebreck, B Gunawan, L Füzesi
    posted to no-tag by rdiaz on 2007-12-26 10:23:16 as **
  • The order of genetic events associated with colorectal cancer progression inferred from meta-analysis of copy number changes.
    Genes Chromosomes Cancer, Vol. 45, No. 1. (January 2006), pp. 31-41.
    by CB Diep, K Kleivi, FR Ribeiro, MR Teixeira, OC Lindgjaerde, RA Lothe
    posted to no-tag by rdiaz on 2007-12-26 10:22:23 as ** along with 1 person jfr
  • Construction of evolutionary tree models for nasopharyngeal carcinoma using comparative genomic hybridization data.
    Cancer Genet Cytogenet, Vol. 168, No. 2. (15 July 2006), pp. 105-108.
    by L Shih-Hsin Wu
    posted to no-tag by rdiaz on 2007-12-26 10:21:01 as **
  • An oncogenetic tree model in gastrointestinal stromal tumours (GISTs) identifies different pathways of cytogenetic evolution with prognostic implications.
    J Pathol, Vol. 211, No. 4. (March 2007), pp. 463-470.
    by B Gunawan, A von Heydebreck, B Sander, HJ Schulten, F Haller, C Langer, T Armbrust, M Bollmann, S Gasparov, D Kovac, L Füzesi
    posted to no-tag by rdiaz on 2007-12-26 10:20:24 as **
  • Oncogenetic tree models based on cytogenetic data: new insights into the development of epithelial tumors of the thymus.
    Cancer Genet Cytogenet, Vol. 158, No. 1. (1 April 2005), pp. 75-80.
    by RJ Rieker, R Penzel, S Aulmann, H Blaeker, A Morresi-Hauf, E Hecker, HF Otto, G Mechtersheimer, A von Heydebreck
    posted to no-tag by rdiaz on 2007-12-26 10:14:49 as ** along with 1 person ealloza
  • Inferring tree models for oncogenesis from comparative genome hybridization data.
    J Comput Biol, Vol. 6, No. 1. (1999), pp. 37-51.
    by R Desper, F Jiang, OP Kallioniemi, H Moch, CH Papadimitriou, AA Schäffer
    posted to no-tag by rdiaz on 2007-12-26 10:04:19 as ** along with 1 person archroad
  • Graph Models of Oncogenesis with an Application to Melanoma
    Journal of Theoretical Biology, Vol. 212, No. 4. (21 October 2001), pp. 535-548.
    by Michael D Radmacher, Richard Simon, Richard Desper, Raymond Taetle, Alejandro A Schaffer, Mark A Nelson
    posted to no-tag by rdiaz on 2007-12-26 10:04:11 as **
  • High throughput screening of methylation status of genes in prostate cancer using an oligonucleotide methylation array
    Carcinogenesis, Vol. 26, No. 2. (February 2005), 471.
    by Yan P Yu, Shirish Paranjpe, Joel Nelson, Sydney Finkelstein, Baoguo Ren, Demetrius Kokkinakis, George Michalopoulos, Jian-Hua Luo
    posted to no-tag by rdiaz on 2007-12-21 15:55:46 as **
  • Clustering by Passing Messages Between Data Points.
    Science (11 January 2007)
    by Brendan J J Frey, Delbert Dueck
    posted to no-tag by rdiaz on 2007-12-20 18:21:23 as ** along with 23 people and 2 groups XIANG matjes johnkork kuhn xtizon jfr jmeppley stevedebacker arjen sterovetta sdvillal nickluscombe ianturton macle bluto rsantana grahamc ccr hexuming worldsun dimatura paulovn daniel51 EBI-regulation ParkinsonLab_at_MaRS
  • Microarray gene expression data with linked survival phenotypes: diffuse large-B-cell lymphoma revisited
    Biostatistics, Vol. 7, No. 2. (April 2006), pp. 268-285.
    by Segal, R Mark
    posted to no-tag by rdiaz on 2007-11-30 14:11:38 as ** along with 2 people jfr djkt
  • Supervised group Lasso with applications to microarray data analysis
    BMC Bioinformatics, Vol. 8 (22 February 2007), 60.
    by Shuangge Ma, Xiao Song, Jian Huang
    posted to no-tag by rdiaz on 2007-11-30 14:06:37 as read along with 2 people jfr ghattem
  • Model-based boosting in high dimensions
    Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2828-2829.
    by Hothorn, Torsten, Buhlmann, Peter
    posted to no-tag by rdiaz on 2007-11-23 10:27:51 as **
  • Assessment of survival prediction models based on microarray data.
    Bioinformatics (7 May 2007)
    by Martin Schumacher, Harald Binder, Thomas Gerds
    posted to no-tag by rdiaz on 2007-11-22 15:03:03 as ** along with 2 people jfr shigepong
  • Predicting survival from microarray data - a comparative study.
    Bioinformatics (6 June 2007)
    by H M M Bøvelstad, S Nygård, H L L Størvold, M Aldrin, O Borgan, A Frigessi, O C C Lingjærde
    posted to no-tag by rdiaz on 2007-11-22 12:45:38 as ** along with 2 people shigepong blackm0k
  • Assessing the Significance of Conserved Genomic Aberrations Using High Resolution Genomic Microarrays
    PLoS Genetics, Vol. 3, No. 8. (1 August 2007), e143.
    by Mitchell Guttman, Carolyn Mies, Katarzyna Dudycz-Sulicz, Sharon J Diskin, Don A Baldwin, Christian J Stoeckert, Gregory R Grant
    posted to no-tag by rdiaz on 2007-11-21 16:35:07 as ** along with 3 people and 2 groups jfr ealloza zwang Bioinformatics BioinfoCIPF
  • High-resolution array-CGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer
    Genome Biology, Vol. 8 (09 October 2007), R215.
    by Suet F Chin, Andrew E Teschendorff, John C Marioni, Yanzhong Wang, Nuno L Barbosa-Morais, Natalie P Thorne, Jose L Costa, Sarah E Pinder, Mark A van de Wiel, Andrew R Green, Ian O Ellis, Peggy L Porter, Simon Tavare, James D Brenton, Bauke Ylstra, Carlos Caldas
    posted to no-tag by rdiaz on 2007-11-20 13:10:11 as ** along with 2 people chrisamiller jfr
  • The Genomic Landscapes of Human Breast and Colorectal Cancers.
    Science (11 October 2007)
    by Laura D D Wood, D Williams W Parsons, Siân Jones, Jimmy Lin, Tobias Sjöblom, Rebecca J J Leary, Dong Shen, Simina M M Boca, Thomas Barber, Janine Ptak, Natalie Silliman, Steve Szabo, Zoltan Dezso, Vadim Ustyanksky, Tatiana Nikolskaya, Yuri Nikolsky, Rachel Karchin, Paul A A Wilson, Joshua S S Kaminker, Zemin Zhang, Randal Croshaw, Joseph Willis, Dawn Dawson, Michail Shipitsin, James K V K Willson, Saraswati Sukumar, Kornelia Polyak, Ben Ho H Park, Charit L L Pethiyagoda, P V Krishna V Pant, Dennis G G Ballinger, Andrew B B Sparks, James Hartigan, Douglas R R Smith, Erick Suh, Nickolas Papadopoulos, Phillip Buckhaults, Sanford D D Markowitz, Giovanni Parmigiani, Kenneth W W Kinzler, Victor E E Velculescu, Bert Vogelstein
    posted to no-tag by rdiaz on 2007-11-19 13:09:24 as ** along with 13 people and 1 group cerami gwenknight jyuh tmmurali jfr eisei ramensky massivemayhem bioyang cabbagezs xingxu shikin renatomilani VUMCGenomics
  • Finding disease candidate genes by liquid association
    Genome Biology, Vol. 8 (04 October 2007), R205.
    by Ker-Chau Li, Aarno Palotie, Shinsheng Yuan, Denis Bronnikov, Daniel Chen, Xuelian Wei, Oi-Wa Choi, Janna Saarela, Leena Peltonen
    posted to no-tag by rdiaz on 2007-11-08 15:25:49 as ** along with 2 people Terkko barriot
  • Characterizing the cancer genome in lung adenocarcinoma : Article : Nature
    posted to no-tag by rdiaz on 2007-11-08 14:54:20 as **
  • Making the most of microarrays
    Nat Biotech, Vol. 24, No. 9. (2006), pp. 1039-1039.
    posted to no-tag by rdiaz on 2007-11-08 14:06:50 as ** along with 2 people giovenko cberry
  • Genome-wide analysis of genetic alterations in acute lymphoblastic leukaemia
    Nature (07 March 2007)
    by Charles G Mullighan, Salil Goorha, Ina Radtke, Christopher B Miller, Elaine Coustan-Smith, James D Dalton, Kevin Girtman, Susan Mathew, Jing Ma, Stanley B Pounds, Xiaoping Su, Ching-Hon Pui, Mary V Relling, William E Evans, Sheila A Shurtleff, James R Downing
    posted to no-tag by rdiaz on 2007-11-08 13:56:04 as ** along with 3 people and 1 group caldavis ealloza blackm0k BioinfoCIPF
  • Integrative genomic analyses identify MITF as a lineage survival oncogene amplified in malignant melanoma
    Nature, Vol. 436, No. 7047., pp. 117-122.
    by Levi A Garraway, Hans R Widlund, Mark A Rubin, Gad Getz, Aaron J Berger, Sridhar Ramaswamy, Rameen Beroukhim, Danny A Milner, Scott R Granter, Jinyan Du, Charles Lee, Stephan N Wagner, Cheng Li, Todd R Golub, David L Rimm, Matthew L Meyerson, David E Fisher, William R Sellers
    posted to no-tag by rdiaz on 2007-11-08 13:52:04 as ** along with 4 people kentsis acorner jfr tabu
  • Genome-wide associations of gene expression variation in humans.
    PLoS Genet, Vol. 1, No. 6. (December 2005)
    by BE Stranger, MS Forrest, AG Clark, MJ Minichiello, S Deutsch, R Lyle, S Hunt, B Kahl, SE Antonarakis, S Tavaré, P Deloukas, ET Dermitzakis
    posted to no-tag by rdiaz on 2007-10-30 17:49:13 as ** along with 7 people and 3 groups shikin adepace qfwills noano ashandanj jo_davies cisevol Bioinformatics EisenLab cis-regulatory-evolution
  • What a difference copy number variation makes
    BioEssays, Vol. 29, No. 4. (2007), pp. 311-313.
    by Hildegard Kehrer-Sawatzki
    posted to acgh by rdiaz on 2007-10-29 08:48:59 as ** along with 3 people and 3 groups balicea dchughes cerami Bioinformatics G4ID Genetics-of-Gambling
  • A response to Yu et al. 'A forward-backward fragment assembling algorithm for the identification of genomic amplification and deletion breakpoints using high-density single nucleotide polymorphism (SNP) array', BMC Bioinformatics 2007, 8: 145
    BMC Bioinformatics, Vol. 8 (16 October 2007), 394.
    by Oscar M Rueda, Ramon Diaz-Uriarte
    posted to no-tag by rdiaz on 2007-10-23 12:28:14 as read
  • From microscopes to microarrays: dissecting recurrent chromosomal rearrangements
    Nat Rev Genet, Vol. 8, No. 11. (November 2007), pp. 869-883.
    by Beverly S Emanuel, Sulagna C Saitta
    posted to no-tag by rdiaz on 2007-10-18 15:52:14 as ** along with 3 people and 1 group giovenko ealloza jdiezperezj BioinfoCIPF
  • Network modeling links breast cancer susceptibility and centrosome dysfunction : Abstract : Nature Genetics
    posted to network by rdiaz on 2007-10-18 15:51:53 as **
  • Cancer genetics: Networks uncover new cancer susceptibility suspect
    Nat Rev Genet, Vol. 8, No. 11. (November 2007), pp. 823-823.
    by Patrick Goymer
    posted to no-tag by rdiaz on 2007-10-18 15:51:11 as **
  • Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome.
    Science (27 September 2007)
    by Jan O O Korbel, Alexander Eckehart E Urban, Jason P P Affourtit, Brian Godwin, Fabian Grubert, Jan Fredrik F Simons, Philip M M Kim, Dean Palejev, Nicholas J J Carriero, Lei Du, Bruce E E Taillon, Zhoutao Chen, Andrea Tanzer, A C Eugenia C Saunders, Jianxiang Chi, Fengtang Yang, Nigel P P Carter, Matthew E E Hurles, Sherman M M Weissman, Timothy T T Harkins, Mark B B Gerstein, Michael Egholm, Michael Snyder
    posted to no-tag by rdiaz on 2007-10-18 15:50:05 as ** along with 9 people and 1 group Neeperando jfr caseybrown dpollard dchughes AaronDarling giovanni jlangdon annacarina07 EisenLab
  • Technology: A new tool for analysing structural variation
    Nat Rev Genet, Vol. 8, No. 11. (November 2007), pp. 822-822.
    by Magdalena Skipper
    posted to no-tag by rdiaz on 2007-10-18 15:48:43 as ** along with 1 person and 1 group ealloza BioinfoCIPF
  • Missing the mark : Nature News
    posted to no-tag by rdiaz on 2007-10-18 15:18:51 as **
  • Mutational and selective effects on copy-number variants in the human genome.
    Nat Genet, Vol. 39, No. 7 Suppl. (July 2007)
    by GM Cooper, DA Nickerson, EE Eichler
    posted to acgh by rdiaz on 2007-10-17 11:49:36 as read along with 1 person and 1 group mrkrause Bioinformatics
  • Methods and strategies for analyzing copy number variation using DNA microarrays.
    Nat Genet, Vol. 39, No. 7 Suppl. (July 2007)
    by NP Carter
    posted to acgh by rdiaz on 2007-10-17 11:45:37 as ** along with 3 people and 1 group jyuh jfr mrkrause Bioinformatics
  • The population genetics of structural variation.
    Nat Genet, Vol. 39, No. 7 Suppl. (July 2007)
    by DF Conrad, ME Hurles
    posted to acgh by rdiaz on 2007-10-17 11:42:37 as ** along with 3 people jyuh mrkrause jlangdon
  • Challenges and standards in integrating surveys of structural variation.
    Nat Genet, Vol. 39, No. 7 Suppl. (July 2007)
    by SW Scherer, C Lee, E Birney, DM Altshuler, EE Eichler, NP Carter, ME Hurles, L Feuk
    posted to acgh by rdiaz on 2007-10-17 11:40:53 as read along with 4 people and 1 group jasonflannick jyuh bpb jlangdon Bioinformatics
  • Copy-number variation and association studies of human disease.
    Nat Genet, Vol. 39, No. 7 Suppl. (July 2007)
    by SA McCarroll, DM Altshuler
    posted to acgh by rdiaz on 2007-10-17 11:34:43 as ** along with 4 people and 1 group jasonflannick jyuh mrkrause balicea Bioinformatics
  • Copy number variants and genetic traits: closer to the resolution of phenotypic to genotypic variability
    Nat Rev Genet, Vol. 8, No. 8. (2007), pp. 639-646.
    by Jacques S Beckmann, Xavier Estivill, Stylianos E Antonarakis
    posted to acgh by rdiaz on 2007-10-17 11:31:32 as read along with 1 person and 1 group ryanraaum Bioinformatics
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