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nuins library [530 articles]

Senaste artiklarna i nuins bibliotek.
  • A new rule-based algorithm for identifying metabolic markers in prostate cancer using tandem mass spectrometry
    Bioinformatics (24 September 2008), btn506.
    by Melanie Osl, Stephan Dreiseitl, Bernhard Pfeifer, Klaus Weinberger, Helmut Klocker, Georg Bartsch, Georg Schafer, Bernhard Tilg, Armin Graber, Christian Baumgartner
    posted to prostate ocbn ms by nuin on 2008-10-01 21:53:24 as **
  • R/parallel - speeding up bioinformatics analysis with R
    BMC Bioinformatics, Vol. 9 (22 September 2008), 390.
    by Gonzalo Vera, Ritsert C Jansen, Remo L Suppi
    posted to r parallel by nuin on 2008-09-23 03:05:57 as ** along with 12 people and 1 group ptrobajo pengchy shikin robertlischke chrisamiller cisevol druvus renatomilani rdiaz GeeSharpMinor neils jandot BergmanLab
  • Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements
    BMC Bioinformatics, Vol. 9 (15 September 2008), 375.
    by Eva Lange, Ralf Tautenhahn, Steffen Neumann, Clemens Groepl
    posted to proteomics ocbn metabolomics alignment by nuin on 2008-09-19 15:43:47 as **
  • GenomeMatcher: A graphical user interface for DNA sequence comparison
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Yoshiyuki Ohtsubo, Wakako I Ohtsubo, Yuji Nagata, Masataka Tsuda
    posted to visualization sequence dna comparison by nuin on 2008-09-19 15:43:14 as ** along with 2 people and 1 group cisevol colinDotAIBN BergmanLab
  • Descendants of Whole Genome Duplication within Gene Order Phylogeny.
    Journal of computational biology : a journal of computational molecular cell biology (12 September 2008)
    by Chunfang Zheng, Qian Zhu, David Sankoff
    posted to phylogenetics duplication by nuin on 2008-09-19 15:42:38 as **
  • Multi-Break Rearrangements and Breakpoint Re-Uses: From Circular to Linear Genomes.
    Journal of computational biology : a journal of computational molecular cell biology (12 September 2008)
    by Max A A Alekseyev
    posted to genome breakpoints by nuin on 2008-09-19 15:42:09 as **
  • How segmental duplications shape our genome: recent evolution of ABCC6 and PKD1 Mendelian disease genes.
    Molecular biology and evolution (12 September 2008)
    by Orsolya Symmons, András Váradi, Tamás Arányi
    posted to genes duplicons by nuin on 2008-09-19 15:41:45 as **
  • CBESW: Sequence Alignment on the Playstation 3
    BMC Bioinformatics, Vol. 9 (17 September 2008), 377.
    by Adrianto Wirawan, Chee K Kwoh, Tri H Nim, Bertil Schmidt
    posted to alignment by nuin on 2008-09-19 15:40:28 as ** along with 2 people sci91078 reyez
  • Specific Alignment of Structured RNA: Stochastic Grammars and Sequence Annealing.
    Bioinformatics (Oxford, England) (16 September 2008)
    by Robert K K Bradley, Lior Pachter, Ian Holmes
    posted to rna alignment by nuin on 2008-09-19 15:40:05 as **
  • caBIG VISDA: modeling, visualization, and discovery for cluster analysis of genomic data
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Yitan Zhu, Huai Li, David Miller, Zuyi Wang, Jianhua Xuan, Robert Clarke, Eric Hoffman, Yue Wang
    posted to genomic cluster by nuin on 2008-09-19 15:34:52 as **
  • The whole alignment and nothing but the alignment: the problem of spurious alignment flanks.
    Nucleic acids research (16 September 2008)
    by Martin C C Frith, Yonil Park, Sergey L L Sheetlin, John L L Spouge
    posted to alignment by nuin on 2008-09-19 15:34:20 as ** along with 2 people and 1 group cisevol sebastien_vigneau BergmanLab
  • BEST 2.0: A Bayesian coalescent approach for estimating species trees.
    Bioinformatics (Oxford, England) (17 September 2008)
    by Liang Liu
    posted to phylogenetics coalescent bayes by nuin on 2008-09-19 15:34:02 as **
  • Getting Started in Computational Immunology
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000128.
    by Steven H Kleinstein
    posted to immunology by nuin on 2008-09-11 18:58:57 as ** along with 8 people and 2 groups Zephyrus barry reyez dakelley GeeSharpMinor rebeccamancy AbnerCYH jjray Roswell Cancer Crosstalk Bioinformatics
  • FACTA: a text search engine for finding associated biomedical concepts.
    Bioinformatics (Oxford, England) (4 September 2008)
    by Yoshimasa Tsuruoka, Jun'ichi Tsujii, Sophia Ananiadou
    posted to text search by nuin on 2008-09-11 18:57:22 as ** along with 2 people dullhunk jyuh
  • Fregene: Simulation of realistic sequence-level data in populations and ascertained samples.
    BMC Bioinformatics, Vol. 9 (08 September 2008), 364.
    by Marc Chadeau-Hyam, Clive J Hoggart, Paul F O'Reilly, John C Whittaker, Maria De Iorio, David J Balding
    posted to simulation sequence population by nuin on 2008-09-11 18:55:55 as ** along with 2 people joaocarrico craigecht
  • ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS)
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Thomas Otto, Leonardo Gomes, Marcelo A Ferreira, Antonio de Miranda, Wim Degrave
    posted to repeats detection by nuin on 2008-09-11 18:54:56 as ** along with 2 people beete wisdom_love
  • Comprehensive genomic characterization defines human glioblastoma genes and core pathways.
    Nature (4 September 2008)
    by , , Roger McLendon, Allan Friedman, Darrell Bigner, , Erwin G G Van Meir, Daniel J J Brat, Gena Marie Mastrogianakis, Jeffrey J J Olson, , Tom Mikkelsen, Norman Lehman, , Ken Aldape, W K K Alfred Yung, Oliver Bogler, , Scott Vandenberg, Mitchel Berger, Michael Prados, , Donna Muzny, Margaret Morgan, Steve Scherer, Aniko Sabo, Lynn Nazareth, Lora Lewis, Otis Hall, Yiming Zhu, Yanru Ren, Omar Alvi, Jiqiang Yao, Alicia Hawes, Shalini Jhangiani, Gerald Fowler, Anthony San Lucas, Christie Kovar, Andrew Cree, Huyen Dinh, Jireh Santibanez, Vandita Joshi, Manuel L L Gonzalez-Garay, Christopher A A Miller, Aleksandar Milosavljevic, Larry Donehower, David A A Wheeler, Richard A A Gibbs, , Kristian Cibulskis, Carrie Sougnez, Tim Fennell, Scott Mahan, Jane Wilkinson, Liuda Ziaugra, Robert Onofrio, Toby Bloom, Rob Nicol, Kristin Ardlie, Jennifer Baldwin, Stacey Gabriel, Eric S S Lander, , Li Ding, Robert S S Fulton, Michael D D McLellan, John Wallis, David E E Larson, Xiaoqi Shi, Rachel Abbott, Lucinda Fulton, Ken Chen, Daniel C C Koboldt, Michael C C Wendl, Rick Meyer, Yuzhu Tang, Ling Lin, John R R Osborne, Brian H H Dunford-Shore, Tracie L L Miner, Kim Delehaunty, Chris Markovic, Gary Swift, William Courtney, Craig Pohl, Scott Abbott, Amy Hawkins, Shin Leong, Carrie Haipek, Heather Schmidt, Maddy Wiechert, Tammi Vickery, Sacha Scott, David J J Dooling, Asif Chinwalla, George M M Weinstock, Elaine R R Mardis, Richard K K Wilson, , Gad Getz, Wendy Winckler, Roel G W G Verhaak, Michael S S Lawrence, Michael O'Kelly, Jim Robinson, Gabriele Alexe, Rameen Beroukhim, Scott Carter, Derek Chiang, Josh Gould, Supriya Gupta, Josh Korn, Craig Mermel, Jill Mesirov, Stefano Monti, Huy Nguyen, Melissa Parkin, Michael Reich, Nicolas Stransky, Barbara A A Weir, Levi Garraway, Todd Golub, Matthew Meyerson, , Lynda Chin, Alexei Protopopov, Jianhua Zhang, Ilana Perna, Sandy Aronson, Narayan Sathiamoorthy, Georgia Ren, Jun Yao, W Ruprecht R Wiedemeyer, Hyunsoo Kim, Sek Won Kong, Yonghong Xiao, Isaac S S Kohane, Jon Seidman, Peter J J Park, Raju Kucherlapati, , Peter W W Laird, Leslie Cope, James G G Herman, Daniel J J Weisenberger, Fei Pan, David Van Den Berg, Leander Van Neste, Joo Mi Yi, Kornel E E Schuebel, Stephen B B Baylin, , Devin M M Absher, Jun Z Z Li, Audrey Southwick, Shannon Brady, Amita Aggarwal, Tisha Chung, Gavin Sherlock, James D D Brooks, Richard M M Myers, , Paul T T Spellman, Elizabeth Purdom, Lakshmi R R Jakkula, Anna V V Lapuk, Henry Marr, Shannon Dorton, Yoon Gi Choi, Ju Han, Amrita Ray, Victoria Wang, Steffen Durinck, Mark Robinson, Nicholas J J Wang, Karen Vranizan, Vivian Peng, Eric Van Name, Gerald V V Fontenay, John Ngai, John G G Conboy, Bahram Parvin, Heidi S S Feiler, Terence P P Speed, Joe W W Gray, , Cameron Brennan, Nicholas D D Socci, Adam Olshen, Barry S S Taylor, Alex Lash, Nikolaus Schultz, Boris Reva, Yevgeniy Antipin, Alexey Stukalov, Benjamin Gross, Ethan Cerami, Wei Qing Wang, Li-Xuan X Qin, Venkatraman E E Seshan, Liliana Villafania, Magali Cavatore, Laetitia Borsu, Agnes Viale, William Gerald, Chris Sander, Marc Ladanyi, , Charles M M Perou, D Neil Hayes, Michael D D Topal, Katherine A A Hoadley, Yuan Qi, Sai Balu, Yan Shi, Junyuan Wu, , Robert Penny, Michael Bittner, Troy Shelton, Elizabeth Lenkiewicz, Scott Morris, Debbie Beasley, Sheri Sanders, , Ari Kahn, Robert Sfeir, Jessica Chen, David Nassau, Larry Feng, Erin Hickey, Jinghui Zhang, John N N Weinstein, , Anna Barker, Daniela S S Gerhard, Joseph Vockley, Carolyn Compton, Jim Vaught, Peter Fielding, Martin L L Ferguson, Carl Schaefer, Subhashree Madhavan, Kenneth H H Buetow, , Francis Collins, Peter Good, Mark Guyer, Brad Ozenberger, Jane Peterson, Elizabeth Thomson
    posted to genes cancer by nuin on 2008-09-11 18:53:20 as ** along with 6 people and 2 groups cchand Zephyrus brianb oelemento shikin shigepong Roswell Cancer Crosstalk GeneGo
  • NITPICK: peak identifcation for mass spectrometry data
    BMC Bioinformatics, Vol. 9 (28 August 2008), 355.
    by Bernhard Y Renard, Marc Kirchner, Hanno Steen, Judith AJ Steen, Fred A Hamprecht
    posted to peak ocbn ms identification by nuin on 2008-09-04 01:14:21 as ** along with 2 people sjcockell jyuh
  • StatAlign: An Extendable Software Package for Joint Bayesian Estimation of Alignments and Evolutionary Trees.
    Bioinformatics (Oxford, England) (27 August 2008)
    by Adám Novák, István Miklós, Rune Lyngsø, Jotun Hein
    posted to sequence alignment by nuin on 2008-09-04 01:13:52 as ** along with 1 person druvus
  • The Spectrum of Mitochondrial Mutation Differs across Species
    PLoS Biology, Vol. 6, No. 8. (1 August 2008), e213.
    by Kristi L Montooth, David M Rand
    posted to mutation mitochondria by nuin on 2008-09-04 01:13:33 as ** along with 1 person stevanspringer
  • SAW: Breaking Down Barriers between Art and Science
    PLoS Biology, Vol. 6, No. 8. (1 August 2008), e211.
    by Anne Osbourn
    posted to science art by nuin on 2008-09-04 01:13:09 as ** along with 2 people livingthingdan amarois
  • The C1C2: A framework for simultaneous model selection and assessment
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Martin Eklund, Ola Spjuth, Jarl Wikberg
    posted to selection model by nuin on 2008-09-04 01:12:25 as ** along with 2 people jyuh chad_davis
  • SynBioSS: The Synthetic Biology Modeling Suite.
    Bioinformatics (Oxford, England) (30 August 2008)
    by Anthony D D Hill, Jonathan R R Tomshine, Emma M B M Weeding, Vassilios Sotiropoulos, Yiannis N N Kaznessis
    posted to synthetic modeling by nuin on 2008-09-04 01:12:06 as **
  • Bosque: Integrated phylogenetic analysis software.
    Bioinformatics (Oxford, England) (1 September 2008)
    by Salvador Ramírez-Flandes, Osvaldo Ulloa
    posted to software phylogenetics by nuin on 2008-09-04 01:07:36 as ** along with 1 person and 2 groups vaulot Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • SynBlast: assisting the analysis of conserved Synteny information
    BMC Bioinformatics, Vol. 9 (24 August 2008), 351.
    by Jorg Lehmann, Peter F Stadler, Sonja J Prohaska
    posted to human mouse synteny by nuin on 2008-08-27 21:41:36 as ** along with 2 people grahamc Neeperando
  • Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes.
    Proc Natl Acad Sci U S A, Vol. 100, No. 20. (30 September 2003), pp. 11484-11489.
    by WJ Kent, R Baertsch, A Hinrichs, W Miller, D Haussler
    posted to human mouse synteny by nuin on 2008-08-27 21:19:12 as ** along with 5 people and 1 group bryankr pcahan1 djkt gjuggler Auger Dead 60's
  • Enrichment of segmental duplications in regions of breaks of synteny between the human and mouse genomes suggest their involvement in evolutionary rearrangements.
    Hum Mol Genet, Vol. 12, No. 17. (1 September 2003), pp. 2201-2208.
    by L Armengol, MA Pujana, J Cheung, SW Scherer, X Estivill
    posted to human mouse synteny by nuin on 2008-08-27 21:18:24 as ** along with 1 person pcahan1
  • Integrative analysis of multiple gene expression profiles with quality-adjusted effect size models.
    BMC Bioinformatics, Vol. 6 (2005)
    by P Hu, CM Greenwood, J Beyene
    posted to meta-analysis by nuin on 2008-08-27 18:53:16 as ** along with 1 person jfr
  • An environmental perspective on large-scale genome clustering based on metabolic capabilities.
    Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008)
    by G Kastenmüller, J Gasteiger, HW Mewes
    posted to clustering genome by nuin on 2008-08-12 18:14:19 as **
  • Towards de novo identification of metabolites by analyzing tandem mass spectra.
    Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008)
    by S Böcker, F Rasche
    posted to metabolites ms by nuin on 2008-08-12 18:11:04 as **
  • Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry.
    Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008)
    by L Käll, JD Storey, WS Noble
    posted to identification ms peptides by nuin on 2008-08-12 18:10:46 as **
  • Segment-based multiple sequence alignment.
    Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008)
    by T Rausch, AK Emde, D Weese, A Döring, C Notredame, K Reinert
    posted to alignment sequence by nuin on 2008-08-12 18:10:24 as **
  • Efficient representation and P-value computation for high-order Markov motifs.
    Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008)
    by PG da Fonseca, KS Guimarães, MF Sagot
    posted to markov motifs by nuin on 2008-08-12 18:10:09 as **
  • A fast and flexible method for the segmentation of aCGH data.
    Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008)
    by E Ben-Yaacov, YC Eldar
    posted to acgh analysis data by nuin on 2008-08-12 18:09:48 as ** along with 2 people talponer aviad_work
  • Analysis of segmental duplications via duplication distance.
    Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008)
    by CL Kahn, BJ Raphael
    posted to distance duplicons by nuin on 2008-08-12 18:09:11 as **
  • Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635.
    by Ari Loytynoja, Nick Goldman
    posted to alignment phylogenetics by nuin on 2008-08-01 11:17:02 as ** along with 22 people and 3 groups marti bpcusack chad_davis hpaces dinnes gjuggler djkt ArtemPankin phoenixzxl jago marck imtechnology aprasad zwang bmaust bpb michaelbarton Schmidtc AbnerCYH gulsacan emptyhb jlgreen Khavkin's lab iSEEM Green Lab
  • A machine learning approach to explore the spectra intensity pattern of peptides using tandem mass spectrometry data
    BMC Bioinformatics, Vol. 9 (30 July 2008), 325.
    by Cong Zhou, Lucas D Bowler, Jianfeng Feng
    posted to ms ocbn proteomics by nuin on 2008-07-30 19:28:15 as **
  • Calculating SPR distances between trees
    Cladistics, Vol. 9999, No. 9999. (2007)
    by Pablo A Goloboff
    posted to distance tree by nuin on 2008-07-30 19:13:24 as **
  • Classification and feature selection algorithms for multi-class CGH data.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)
    by J Liu, S Ranka, T Kahveci
    posted to cgh classification by nuin on 2008-07-30 19:13:05 as ** along with 1 person jfr
  • MACHOS: Markov clusters of homologous subsequences.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)
    by S Wong, MA Ragan
    posted to clusters markov proteins by nuin on 2008-07-30 19:12:47 as ** along with 1 person gulkur
  • Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i41-49.
    by Yaniv Loewenstein, Elon Portugaly, Menachem Fromer, Michal Linial
    posted to clustering protein by nuin on 2008-07-30 19:12:18 as ** along with 4 people druvus nklee sconlan chad_davis
  • Classification of arrayCGH data using fused SVM.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)
    by F Rapaport, E Barillot, JP Vert
    posted to arraycgh classification by nuin on 2008-07-30 19:11:53 as ** along with 1 person jfr
  • Estimating true evolutionary distances under the DCJ model.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)
    by Y Lin, BM Moret
    posted to distance evolutionary by nuin on 2008-07-30 19:10:59 as **
  • Likelihood Based Clustering (LiBaC) for Codon Models, a method for grouping sites according to similarities in the underlying process of evolution.
    Molecular biology and evolution (26 June 2008)
    by Le Bao, Hong Gu, Katherine A A Dunn, Joseph P P Bielawski
    posted to evolution similarities by nuin on 2008-07-30 19:10:39 as **
  • Investigating selection on viruses: a statistical alignment approach
    BMC Bioinformatics, Vol. 9 (10 July 2008), 304.
    by Saskia de Groot, Thomas Mailund, Gerton Lunter, Jotun Hein
    posted to alignment selection virus by nuin on 2008-07-30 19:09:57 as ** along with 2 people dakelley Ema
  • Grammar-based distance in progressive multiple sequence alignment
    BMC Bioinformatics, Vol. 9 (10 July 2008), 306.
    by David J Russell, Hasan H Otu, Khalid Sayood
    posted to alignment grammar by nuin on 2008-07-30 19:09:28 as ** along with 1 person Neeperando
  • The complete nucleotide sequences of the five genetically distinct plastid genomes of Oenothera, subsection Oenothera: II. A microevolutionary view using bioinformatics and formal genetic data.
    Molecular biology and evolution (8 July 2008)
    by Stephan Greiner, Xi Wang, Reinhold G G Herrmann, Uwe Rauwolf, Klaus Mayer, Georg Haberer, Jörg Meurer
    posted to bioinformatics by nuin on 2008-07-30 19:09:05 as **
  • Metagenomics reveals our incomplete knowledge of global diversity.
    Bioinformatics (Oxford, England) (13 July 2008)
    by Miguel Pignatelli, Gabriel Aparicio, Ignacio Blanquer, Vicente Hernández, Andrés Moya, Javier Tamames
    posted to metagenomics by nuin on 2008-07-30 19:05:41 as ** along with 4 people and 3 groups vaulot reyez djkt bootsy Papers recommended by the Roscoff Plankton Group Microbial-Ecology iSEEM
  • Integrating Metabolic, Transcriptional Regulatory and Signal Transduction Models in Escherichia coli.
    Bioinformatics (Oxford, England) (10 July 2008)
    by Markus W W Covert, Nan Xiao, Tiffany J J Chen, Jonathan R R Karr
    posted to transcription by nuin on 2008-07-30 19:05:21 as ** along with 1 person Ema
  • Experience using web services for biological sequence analysis.
    Briefings in bioinformatics (11 July 2008)
    by Heinz Stockinger, Teresa Attwood, Shahid Nadeem N Chohan, Richard Côté, Philippe Cudré-Mauroux, Laurent Falquet, Pedro Fernandes, Robert D D Finn, Taavi Hupponen, Eija Korpelainen, Alberto Labarga, Aurelie Laugraud, Tania Lima, Evangelos Pafilis, Marco Pagni, Steve Pettifer, Isabelle Phan, Nazim Rahman
    posted to analysis sequence webservices by nuin on 2008-07-30 19:04:32 as ** along with 2 people druvus dullhunk
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