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nklees library [360 articles]

Senaste artiklarna i nklees bibliotek.
  • Eukaryotic transcription factor binding sites - modeling and integrative search methods
    Bioinformatics (21 April 2008), btn198.
    by Sridhar Hannenhalli
    posted to motif detection by nklee on 2008-10-12 01:45:08 as ** along with 9 people oannes hplatero maximilianh heliopais bootsy Ema sameetmehta jyuh chad_davis
  • notes Exploratory Consensus of Hierarchical Clusterings for Melanoma and Breast Cancer
    IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 99, No. 1. (5555)
    by Pritha Mahata
    posted to hierachical clustering by nklee on 2008-10-09 06:06:51 as **
  • notes Searching for regulatory elements in human noncoding sequences.
    Curr Opin Struct Biol, Vol. 7, No. 3. (June 1997), pp. 399-406.
    by L Duret, P Bucher
    posted to review by nklee on 2008-10-09 04:39:32 as ** along with 2 people chad_davis lusk
  • Generalization through similarity: motif discourse in the discovery and elaboration of zinc finger proteins
    Journal of Biomedical Discovery and Collaboration, Vol. 2 (03 October 2007), 5.
    by Celeste M Condit, Bruce L Railsback
    posted to similarity motif by nklee on 2008-10-08 07:37:49 as ** along with 1 person xili03
  • Algorithms for phylogenetic footprinting.
    J Comput Biol, Vol. 9, No. 2. (2002), pp. 211-223.
    by M Blanchette, B Schwikowski, M Tompa
    posted to genomic footprinting comparative by nklee on 2008-09-30 04:43:53 as ** along with 2 people chad_davis dquest
  • Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i41-49.
    by Yaniv Loewenstein, Elon Portugaly, Menachem Fromer, Michal Linial
    posted to clustering by nklee on 2008-09-29 06:23:05 as ** along with 5 people chad_davis isimpson druvus sconlan nuin
  • An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)
    Genome Res, Vol. 18, No. 9. (2008), pp. 1518-1529.
    by Rakyan
    posted to scale large dataset by nklee on 2008-09-29 00:17:24 as ** along with 1 group BenosLab
  • Genome-Wide Identification of Human Functional DNA Using a Neutral Indel Model.
    PLoS Comput Biol, Vol. 2, No. 1. (13 January 2006)
    by Gerton Lunter, Chris P P Ponting, Jotun Hein
    posted to scale genome comparative by nklee on 2008-09-26 07:38:29 as ** along with 10 people and 2 groups aprasad eckart_bindewald eweaver lhonigberg acidwizard juliettecolinas bpcusack Stew cisevol mailund EisenLab cis-regulatory-evolution
  • Comparative genomics: genome-wide analysis in metazoan eukaryotes.
    Nature reviews. Genetics, Vol. 4, No. 4. (April 2003), pp. 251-262.
    by A Ureta-Vidal, L Ettwiller, E Birney
    posted to review by nklee on 2008-09-26 07:32:47 as **
  • Automated Hierarchical Density Shaving: A robust, automated clustering and visualization framework for large biological datasets
    Computational Biology and Bioinformatics, IEEE/ACM Transactions on, Vol. 11, No. 1. (2009), pp. 1-1.
    by G Gupta, A Liu, Ghosh
    posted to no-tag by nklee on 2008-09-25 05:32:25 as **
  • Feature Selection for Gene Expression using Model-based Entropy
    Computational Biology and Bioinformatics, IEEE/ACM Transactions on, Vol. 1, No. 2., pp. 1-2.
    by S Zhu, D Wang, T Li
    posted to selection feature by nklee on 2008-09-25 05:30:14 as **
  • Finding the Nearest Neighbors in Biological Databases Using Less Distance Computations
    Computational Biology and Bioinformatics, IEEE/ACM Transactions on, Vol. 1, No. 1. (2009), pp. 1-10.
    by J Zhou, J Sander, Z Cai, L Wang, G Lin
    posted to neighbor nearest by nklee on 2008-09-25 05:23:25 as **
  • EVOPRINTER, a multigenomic comparative tool for rapid identification of functionally important DNA
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 41. (11 October 2005), pp. 14700-14705.
    by Ward F Odenwald, Wayne Rasband, Alexander Kuzin, Thomas Brody
    posted to comparative by nklee on 2008-09-25 02:26:55 as **
  • Detection of functional DNA motifs via statistical over-representation
    Nucl. Acids Res., Vol. 32, No. 4. (26 February 2004), pp. 1372-1381.
    by Martin C Frith, Yutao Fu, Liqun Yu, Jiang-Fan Chen, Ulla Hansen, Zhiping Weng
    posted to no-tag by nklee on 2008-09-22 03:35:44 as ** along with 1 person natstreet
  • Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology
    Systematic Zoology, Vol. 20, No. 4. (1971), pp. 406-416.
    by Walter M Fitch
    posted to no-tag by nklee on 2008-08-27 01:44:34 as **
  • Context-dependent DNA recognition code for C2H2 zinc-finger transcription factors.
    Bioinformatics (Oxford, England) (27 June 2008)
    by Jiajian Liu, Gary D D Stormo
    posted to network neural by nklee on 2008-08-27 01:11:25 as ** along with 3 people dakelley aalibes maximilianh
  • Benchmarking tools for the alignment of functional noncoding DNA.
    BMC Bioinformatics, Vol. 5 (21 January 2004)
    by DA Pollard, CM Bergman, J Stoye, SE Celniker, MB Eisen
    posted to benchmarking by nklee on 2008-08-15 03:39:15 as ** along with 6 people and 1 group cap1 indigoviolet lilou adijr idonaldson gjuggler EisenLab
  • Genome evolution in yeasts.
    Nature, Vol. 430, No. 6995. (1 July 2004), pp. 35-44.
    by B Dujon, D Sherman, G Fischer, P Durrens, S Casaregola, I Lafontaine, J De Montigny, C Marck, C Neuvéglise, E Talla, N Goffard, L Frangeul, M Aigle, V Anthouard, A Babour, V Barbe, S Barnay, S Blanchin, JM Beckerich, E Beyne, C Bleykasten, A Boisramé, J Boyer, L Cattolico, F Confanioleri, A De Daruvar, L Despons, E Fabre, C Fairhead, H Ferry-Dumazet, A Groppi, F Hantraye, C Hennequin, N Jauniaux, P Joyet, R Kachouri, A Kerrest, R Koszul, M Lemaire, I Lesur, L Ma, H Muller, JM Nicaud, M Nikolski, S Oztas, O Ozier-Kalogeropoulos, S Pellenz, S Potier, GF Richard, ML Straub, A Suleau, D Swennen, F Tekaia, M Wésolowski-Louvel, E Westhof, B Wirth, M Zeniou-Meyer, I Zivanovic, M Bolotin-Fukuhara, A Thierry, C Bouchier, B Caudron, C Scarpelli, C Gaillardin, J Weissenbach, P Wincker, JL Souciet
    posted to yeasts by nklee on 2008-08-15 03:16:44 as ** along with 5 people and 3 groups evaf indigoviolet dchughes maximilianh dbenn EisenLab G4ID Genetics-of-Gambling
  • Whole-genome prokaryotic phylogeny
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2329-2335.
    by Stefan R Henz, Daniel H Huson, Alexander F Auch, Kay Nieselt-Struwe, Stephan C Schuster
    posted to phylogeny by nklee on 2008-08-05 00:44:38 as **
  • Identification and characterization of multi-species conserved sequences.
    Genome Res, Vol. 13, No. 12. (December 2003), pp. 2507-2518.
    by EH Margulies, M Blanchette, D Haussler, ED Green,
    posted to comparative dataset by nklee on 2008-07-18 02:05:47 as ** along with 5 people and 1 group operon ujh brant sujaikumar bezdan EisenLab
  • Deterministic annealing EM algorithm
    Neural Networks, Vol. 11, No. 2. (31 March 1998), pp. 271-282.
    by Naonori Ueda, Ryohei Nakano
    posted to no-tag by nklee on 2008-07-16 07:07:00 as **
  • Computational methods for transcriptional regulation.
    Curr Opin Genet Dev, Vol. 15, No. 2. (April 2005), pp. 214-221.
    by ED Siggia
    posted to review by nklee on 2008-07-16 03:57:31 as ** along with 7 people and 2 groups barry dpollard koller bertelsen Borelli balicea jjray Bioinformatics EisenLab
  • Probabilistic clustering of sequences: Inferring new bacterial regulons by comparative genomics
    PNAS, Vol. 99, No. 11. (2002), pp. 7323-7328.
    by Erik van Nimwegen†, Mihaela Zavolan, Nikolaus Rajewsky, Eric D Siggia
    posted to clustering comparative genomic by nklee on 2008-07-16 01:20:21 as **
  • Multiple sequence alignment
    Current Opinion in Structural Biology, Vol. 16, No. 3. (June 2006), pp. 368-373.
    by Robert C Edgar, Serafim Batzoglou
    posted to review by nklee on 2008-07-14 08:21:05 as ** along with 6 people and 1 group CharlesM caporaso rabio cjeans mingzhi edvin biomedical-nlp
  • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.
    Nature, Vol. 408, No. 6814. (14 December 2000), pp. 796-815.
    by
    posted to arabidopsis thaliana by nklee on 2008-07-14 03:55:44 as ** along with 9 people and 1 group sdinka ataheri moborg echinotrix timflutre byy ArtemPankin CitoJam hsekiguc plant-development
  • Enhanced position weight matrices using mixture models
    Bioinformatics, Vol. 21, No. Suppl_1. (2005), pp. i204-i212.
    by Sridhar Hannenhalli, Li-San Wang
    posted to mixture model by nklee on 2008-07-08 05:33:45 as **
  • Finite Mixture Models
    (02 October 2000)
    by Geoffrey Mclachlan, David Peel
    posted to mixture by nklee on 2008-07-08 05:27:37 as ** along with 5 people ctacmo OscarRueda vplagnol amsantos umarred27
  • Optimal Smoothing of Kernel-Based Topographic Maps with Application to Density-Based Clustering of Shapes
    The Journal of VLSI Signal Processing, Vol. 37, No. 2. (1 June 2004), pp. 211-222.
    by Marc M Van Hulle, Temujin Gautama
    posted to likelihood maximum by nklee on 2008-06-27 06:10:35 as **
  • Non-additivity in protein-DNA binding.
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2254-2263.
    by RA O'Flanagan, G Paillard, R Lavery, AM Sengupta
    posted to binding dependency energy by nklee on 2008-06-20 05:35:23 as ** along with 2 people and 1 group reidy blobbybirdman UH - Computational Biology
  • Revisiting the Saccharomyces cerevisiae predicted ORFeome
    Genome Res. (23 May 2008), gr.076661.108.
    by Qian-Ru Li, Anne-Ruxandra Carvunis, Haiyuan Yu, Jing-Dong J Han, Quan Zhong, Nicolas Simonis, Stanley Tam, Tong Hao, Niels J Klitgord, Denis Dupuy, Danny Mou, Ilan Wapinski, Aviv Regev, David E Hill, Michael E Cusick, Marc Vidal
    posted to genome yeast by nklee on 2008-06-20 02:38:24 as ** along with 4 people and 1 group dbensasson stajich biehl jyuh Berkeley Mycology
  • Tuning in to the signals: noncoding sequence conservation in vertebrate genomes
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Greg Elgar, Tanya Vavouri
    posted to comparative by nklee on 2008-06-20 02:35:53 as ** along with 2 people djkt dchughes
  • Market segmentation by maximum likelihood clustering using choice elasticities
    European journal of operational research, Vol. 154, No. 3. (2004), pp. 779-786.
    by Harald Hruschka, Werner Fettes, Markus Probst
    posted to likelihood maximum by nklee on 2008-06-18 09:08:55 as **
  • Maximum likelihood competitive learning
    Vol. 2 (1990)
    by S Nowlan
    edited by D Touretzky
    posted to clustering likelihood maximum by nklee on 2008-06-17 07:42:54 as **
  • ROC analysis: applications to the classification of biological sequences and 3D structures
    Brief Bioinform (11 January 2008), bbm064.
    by Paolo Sonego, Andras Kocsor, Sandor Pongor
    posted to analysis roc by nklee on 2008-06-16 06:27:01 as ** along with 4 people cjeans girschick neils spsdigest
  • Unsupervised learning of finite mixture models
    Pattern Analysis and Machine Intelligence, IEEE Transactions on, Vol. 24, No. 3. (2002), pp. 381-396.
    by MAF Figueiredo, AK Jain
    posted to mixture by nklee on 2008-06-12 05:09:28 as ** along with 4 people and 2 groups alexr balicea shilad edmundo59 Autoregulation GroupLens
  • Testing the number of components in a normal mixture
    Biometrika, Vol. 88, No. 3. (1 October 2001), pp. 767-778.
    by Yungtai Lo, Nancy R Mendell, Donald B Rubin
    posted to mixture by nklee on 2008-06-12 05:04:28 as ** along with 1 person gjuggler
  • Self-organizing mixture networks for probability density estimation
    Neural Networks, IEEE Transactions on, Vol. 12, No. 2. (2001), pp. 405-411.
    by H Yin, NM Allinson
    posted to mixture by nklee on 2008-06-10 02:53:11 as **
  • Self-organizing maps, vector quantization, and mixture modeling
    Neural Networks, IEEE Transactions on, Vol. 12, No. 6. (2001), pp. 1299-1305.
    by T Heskes
    posted to mixture model by nklee on 2008-06-10 02:50:15 as ** along with 1 person zhengzhong
  • Differential binding of quadruplex structures of muscle-specific genes regulatory sequences by MyoD, MRF4 and myogenin
    Nucl. Acids Res. (29 May 2008), gkn340.
    by Anat Yafe, Jeny Shklover, Pnina Weisman-Shomer, Eyal Bengal, Michael Fry
    posted to muscle by nklee on 2008-06-06 11:22:21 as ** along with 2 people and 1 group jmrivort maximilianh G-quadruplex
  • Natural selection promotes the conservation of linkage of co-expressed genes
    Trends in Genetics, Vol. 18, No. 12. (1 December 2002), pp. 604-606.
    by Laurence D Hurst, Elizabeth J Williams, Csaba Pál
    posted to conservation by nklee on 2008-05-30 03:19:49 as **
  • Conservation of divergent transcription in fungi
    Trends in Genetics, Vol. 24, No. 5. (May 2008), pp. 207-211.
    by Philip R Kensche, Martin Oti, Bas E Dutilh, Martijn A Huynen
    posted to comparative conservation by nklee on 2008-05-30 03:13:26 as ** along with 1 person and 1 group stajich Berkeley Mycology
  • A new approach to the assessment of the quality of predictions of transcription factor binding sites
    Journal of Biomedical Informatics, Vol. 40, No. 2. (April 2007), pp. 139-149.
    by Szymon Nowakowski, Jerzy Tiuryn
    posted to evaluation by nklee on 2008-05-20 03:16:24 as **
  • A new model of self-organizing neural networks and its application in data projection
    Neural Networks, IEEE Transactions on, Vol. 12, No. 1. (2001), pp. 153-158.
    by Mu-Chun Su, Hsiao-Te Chang
    posted to dsom network neural by nklee on 2008-05-16 00:16:09 as **
  • Nucleosome positions predicted through comparative genomics
    Nature Genetics, Vol. 38, No. 10. (10 September 2006), pp. 1210-1215.
    by Ilya P Ioshikhes, Istvan Albert, Sara J Zanton, Franklin B Pugh
    posted to nucleosome by nklee on 2008-05-14 23:55:43 as ** along with 1 person sonjadaniela
  • Statistics review 1: presenting and summarising data.
    Crit Care, Vol. 6, No. 1. (February 2002), pp. 66-71.
    by E Whitley, J Ball
    posted to statistics by nklee on 2008-05-09 03:32:05 as ** along with 1 person jyuh
  • Statistics review 2: samples and populations.
    Crit Care, Vol. 6, No. 2. (April 2002), pp. 143-148.
    by E Whitley, J Ball
    posted to statistics by nklee on 2008-05-09 03:30:34 as ** along with 1 person jyuh
  • Statistics review 3: hypothesis testing and P values.
    Crit Care, Vol. 6, No. 3. (June 2002), pp. 222-225.
    by E Whitley, J Ball
    posted to statistics by nklee on 2008-05-09 03:30:12 as ** along with 1 person jyuh
  • Statistics review 4: sample size calculations.
    Crit Care, Vol. 6, No. 4. (August 2002), pp. 335-341.
    by E Whitley, J Ball
    posted to statistics by nklee on 2008-05-09 03:27:57 as ** along with 1 person jyuh
  • Statistics review 2: Samples and populations
    Critical Care, Vol. 7, No. 1. (2003)
    by Elise Whitley, Jonathan Ball
    posted to statistics by nklee on 2008-05-09 03:27:10 as **
  • Statistics review 9: one-way analysis of variance.
    Crit Care, Vol. 8, No. 2. (April 2004), pp. 130-136.
    by V Bewick, L Cheek, J Ball
    posted to statistics by nklee on 2008-05-09 03:26:23 as ** along with 1 person jyuh
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