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neils' proteins [41 articles]

Senaste hänvisningarna i neils' bibliotek insorterade under taggen proteins. You can also see everyone's proteins.
  • Terminal proteins of Streptomyces chromosome can target DNA into eukaryotic nuclei
    Nucl. Acids Res. (14 May 2008), gkm1170.
    by Hsiu-Hui Tsai, Chih-Hung Huang, Alan M Lin, Carton W Chen
    posted to targeting streptomyces scl proteins nucleus eukaryotic by neils on 2008-05-15 04:29:13 as **
  • Predicted roles for hypothetical proteins in the low-temperature expressed proteome of the Antarctic archaeon Methanococcoides burtonii.
    Journal of proteome research, Vol. 4, No. 2. (r 2005), pp. 464-472.
    by NF Saunders, A Goodchild, M Raftery, M Guilhaus, PM Curmi, R Cavicchioli
    posted to psychrophily proteins prediction methanococcoides function bioinformatics archaea antarctic by neils on 2008-05-11 10:09:25 as **
  • The Leucine-Rich Repeat Domain of Internalin B Folds along a Polarized N-Terminal Pathway
    Structure, Vol. 16 (May 2008), pp. 705-714.
    by Naomi Courtemanche, Doug Barrick
    posted to repeat proteins protein pathway lrr leucine folding by neils on 2008-05-07 02:37:18 as **
  • Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3635-3641.
    by JC Obenauer, LC Cantley, MB Yaffe
    posted to transduction structure software sites signal sequence proteome proteins protein phosphorylation motifs internet databases binding article-predikin article-nar analysis amino algorithms by neils on 2008-04-24 16:16:06 as ** along with 2 people Evangelia mloewer
  • Site-Specific Phosphorylation Profiling of Arabidopsis Proteins by Mass Spectrometry and Peptide Chip Analysis
    J. Proteome Res. (24 April 2008)
    by Sergio de la Fuente van Bentem, Dorothea Anrather, Ilse Dohnal, Elisabeth Roitinger, Edina Csaszar, Jos Joore, Joshua Buijnink, Alessandro Carreri, Celine Forzani, Zdravko J Lorkovic, Andrea Barta, David Lecourieux, Andreas Verhounig, Claudia Jonak, Heribert Hirt
    posted to spectrometry proteins plant phosphorylation peptide mass chip arabidopsis by neils on 2008-04-24 06:46:05 as ** along with 2 people brianb cjhall
  • Identification of Proteins Secreted by Malaria Parasite into Erythrocyte using SVM and PSSM profiles
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Ruchi Verma, Ajit Tiwari, Sukhwinder Kaur, Grish Varshney, Gajendra Raghava
    posted to bioinformatics erythrocyte machine-learning malaria prediction proteins pssm secretion svm by neils on 2008-04-17 00:31:17 as ** along with 1 person arNQ
  • High-Throughput, Combinatorial Engineering of Initial Codons for Tunable Expression of Recombinant Proteins
    J. Proteome Res. (4 April 2008)
    by Jin-Ho Ahn, Jung-Won Keum, Dong-Myung Kim
    posted to codon expression proteins recombinant usage by neils on 2008-04-04 07:14:07 as **
  • Protein production and purification.
    Nat Methods, Vol. 5, No. 2. (February 2008), pp. 135-146.
    by S Gräslund, P Nordlund, J Weigelt, J Bray, O Gileadi, S Knapp, U Oppermann, C Arrowsmith, R Hui, J Ming, S Dhe-Paganon, HW Park, A Savchenko, A Yee, A Edwards, R Vincentelli, C Cambillau, R Kim, SH Kim, Z Rao, Y Shi, TC Terwilliger, CY Kim, LW Hung, GS Waldo, Y Peleg, S Albeck, T Unger, O Dym, J Prilusky, JL Sussman, RC Stevens, SA Lesley, IA Wilson, A Joachimiak, F Collart, I Dementieva, MI Donnelly, WH Eschenfeldt, Y Kim, L Stols, R Wu, M Zhou, SK Burley, JS Emtage, JM Sauder, D Thompson, K Bain, J Luz, T Gheyi, F Zhang, S Atwell, SC Almo, JB Bonanno, A Fiser, S Swaminathan, FW Studier, MR Chance, A Sali, TB Acton, R Xiao, L Zhao, LC Ma, JF Hunt, L Tong, K Cunningham, M Inouye, S Anderson, H Janjua, R Shastry, CK Ho, D Wang, H Wang, M Jiang, GT Montelione, DI Stuart, RJ Owens, S Daenke, A Schütz, U Heinemann, S Yokoyama, K Büssow, KC Gunsalus
    posted to expression genomics proteins purification sg structure by neils on 2008-02-01 14:58:52 as ** along with 4 people hchmani Yanno jyuh dchughes
  • Amino acid composition of genomes, lifestyles of organisms, and evolutionary trends: a global picture with correspondence analysis
    Gene, Vol. 297, No. 1-2. (4 September 2002), pp. 51-60.
    by Fredj Tekaia, Edouard Yeramian, Bernard Dujon
    posted to analysis composition correspondence evolution for-thuber genomics global proteins sequences thermophily by neils on 2008-01-25 06:51:06 as ** along with 1 person nagendranow
  • Comparative structural analysis of psychrophilic and meso- and thermophilic enzymes.
    Proteins, Vol. 47, No. 2. (1 May 2002), pp. 236-249.
    by G Gianese, F Bossa, S Pascarella
    posted to enzymes for-thuber mesophily proteins psychrophily structure thermal thermophily by neils on 2008-01-25 06:33:18 as **
  • Comprehensive analysis of co-occurring domain sets in yeast proteins
    BMC Genomics, Vol. 8 (11 June 2007), 161.
    by Inbar Cohen-Gihon, Ruth Nussinov, Roded Sharan
    posted to co-occurrence domains interaction proteins yeast by neils on 2008-01-10 05:32:08 as **
  • Enhanced Membrane Protein Topology Prediction Using a Hierarchical Classification Method and a New Scoring Function
    J. Proteome Res. (15 December 2007)
    by Allan Lo, Hua-Sheng Chiu, Ting-Yi Sung, Ping-Chiang Lyu, Wen-Lian Hsu
    posted to bioinformatics membrane prediction proteins svm by neils on 2007-12-15 07:22:26 as **
  • Statistical analysis of the physical properties of the 20 naturally occurring amino acids
    Journal of Protein Chemistry, Vol. 4, No. 1. (1 February 1985), pp. 23-55.
    by Akinori Kidera, Yasuo Konishi, Masahito Oka, Tatsuo Ooi, Harold A Scheraga
    posted to acids amino proteins sequences statistics by neils on 2007-12-11 06:54:52 as **
  • Predicting gene ontology functions from protein's regional surface structures
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Zhi P Liu, Ling Y Wu, Yong Wang, Luonan Chen, Xiang S Zhang
    posted to function ontology prediction proteins structure by neils on 2007-12-11 06:25:59 as ** along with 2 people carlk tjimenez
  • Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction.
    Curr Opin Microbiol, Vol. 7, No. 5. (October 2004), pp. 535-545.
    by R Jansen, M Gerstein
    posted to bioinformatics networks prediction proteins by neils on 2007-12-10 00:09:13 as ** along with 5 people and 2 groups carlk okarsligil lfriedl wnpx grahamc kdl Bioinformatics
  • Computational methods for protein-protein interaction and their application.
    Curr Protein Pept Sci, Vol. 6, No. 5. (October 2005), pp. 443-449.
    by TL Shi, YX Li, YD Cai, KC Chou
    posted to bioinformatics interaction networks prediction proteins by neils on 2007-12-10 00:07:11 as ** along with 1 person bicko
  • Refining Protein Subcellular Localization
    PLoS Computational Biology, Vol. 1, No. 6. (1 November 2005), e66.
    by Michelle S Scott, Sara J Calafell, David Y Thomas, Michael T Hallett
    posted to bioinformatics localisation prediction proteins subcellular by neils on 2007-12-07 08:36:11 as ** along with 2 people and 1 group dolhuis grahamc SNE
  • GPS: a comprehensive www server for phosphorylation sites prediction.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (Jul 2005), pp. W184-W187.
    by Yu Xue, Fengfeng Zhou, Minjie Zhu, Kashif Ahmed, Guoliang Chen, Xuebiao Yao
    posted to analysis article-nar article-predikin internet kinases microfilament phosphoproteins phosphorylation protein proteins sequence software specificity substrate tissue by neils on 2007-12-04 03:22:14 as **
  • Calcium/calmodulin-dependent protein kinase II (CaMKII) localization acts in concert with substrate targeting to create spatial restriction for phosphorylation.
    J Biol Chem, Vol. 280, No. 10. (Mar 2005), pp. 9210-9216.
    by Jennifer Tsui, Masaki Inagaki, Howard Schulman
    posted to article-predikin calcium-calmodulin-dependent cell chain fusion humans kinase kinases kinetics line membrane microdomains phosphorylation polymerase protein proteins reaction recombinant signal transduction transfection transport type by neils on 2007-12-04 03:22:14 as **
  • Centrosomal anchoring of the protein kinase CK1delta mediated by attachment to the large, coiled-coil scaffolding protein CG-NAP/AKAP450.
    J Mol Biol, Vol. 322, No. 4. (Sep 2002), pp. 785-797.
    by James E Sillibourne, Diane M Milne, Mikiko Takahashi, Yoshitaka Ono, David W Meek
    posted to acid acids adaptor aethiops amino anchor animals article-predikin carrier casein catalysis cells centrosome cercopithecus cos cytoskeletal data fractions fragments fusion humans isoenzymes kinase kinases male molecular peptide precipitin protein proteins rats recombinant sequence signal specificity structure subcellular substrate tertiary tests transducing by neils on 2007-12-04 03:22:14 as **
  • Active Ca2+/calmodulin-dependent protein kinase II gamma B impairs positive selection of T cells by modulating TCR signaling.
    J Immunol, Vol. 175, No. 2. (Jul 2005), pp. 656-664.
    by Maureen A Mcgargill, Leslie L Sharp, Jack D Bui, Stephen M Hedrick, Sébastien Calbo
    posted to antigens article-predikin c57bl ca2-calmodulin calcium cd3 cell dependent differentiation domains female fluid homology humans inbred intracellular isoenzymes kinase knockout line lymphocyte male mice p56lck peptides phosphorylation protein proteins protein-tyrosine-phosphatase receptors signal signaling specific src subsets t-cell t-lymphocyte transduction transgenic tumor tyrosine animals antigen by neils on 2007-12-04 03:22:14 as **
  • Systematic discovery of in vivo phosphorylation networks.
    Cell, Vol. 129, No. 7. (Jun 2007), pp. 1415-1426.
    by Rune Linding, Lars J Jensen, Gerard J Ostheimer, Marcel ATM van Vugt, Claus Jørgensen, Ioana M Miron, Francesca Diella, Karen Colwill, Lorne Taylor, Kelly Elder, Pavel Metalnikov, Vivian Nguyen, Adrian Pasculescu, Jing Jin, Jin G Park, Leona D Samson, James R Woodgett, Robert B Russell, Peer Bork, Michael B Yaffe, Tony Pawson
    posted to article-predikin binding biology cdc2 cell computational cycle damage dna dna-binding enzymes factors glycogen humans intracellular kinase kinases peptides phosphoproteins phosphorylation protein proteins protein-serine-threonine proteomics repair repressor signal signaling sites software suppressor synthase transcription transduction tumor by neils on 2007-12-04 03:22:14 as **
  • Protein disorder prediction: implications for structural proteomics.
    Structure, Vol. 11, No. 11. (Nov 2003), pp. 1453-1459.
    by Rune Linding, Lars J Jensen, Francesca Diella, Peer Bork, Toby J Gibson, Robert B Russell
    posted to article-nar article-predikin circular computer conformation crystallography dichroism domains homology ligands magnetic models networks neural protein proteins proteome rays resonance sensitivity specificity spectroscopy src statistics temperature theoretical topic ultraviolet x-ray by neils on 2007-12-04 03:22:13 as **
  • Identification of residues which regulate activity of the STE20-related kinase hMINK.
    Biochem Biophys Res Commun, Vol. 300, No. 3. (Jan 2003), pp. 694-698.
    by Jaeseung Lim, Andrew Lennard, Paul W Sheppard, Stuart Kellie
    posted to acid amino antibody article-predikin cell cerevisiae channels cloning data humans jnk kidney kinases line mitogen-activated molecular mutagenesis organ phosphorylation potassium protein proteins protein-serine-threonine relationship saccharomyces sequence site-directed specificity structure structure-activity tertiary voltage-gated by neils on 2007-12-04 03:22:13 as **
  • Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.
    J Mol Biol, Vol. 305, No. 3. (Jan 2001), pp. 567-580.
    by A Krogh, B Larsson, G von Heijne, EL Sonnhammer
    posted to article-nar article-predikin bacterial chains computational databases design fungal genome internet markov membrane of plant porins protein proteins reproducibility research results secondary sensitivity signals software solubility sorting specificity structure by neils on 2007-12-04 03:22:13 as **
  • Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors.
    Plant J, Vol. 44, No. 6. (Dec 2005), pp. 939-949.
    by Yuhko Kobayashi, Michiharu Murata, Hideyuki Minami, Shuhei Yamamoto, Yasuaki Kagaya, Tokunori Hobo, Akiko Yamamoto, Tsukaho Hattori
    posted to abscisic acid activation amino article-predikin basic-leucine data elements enzyme expression factors gene growth kinases kinetics molecular oryza osmotic phosphorylation plant pressure proteins protein-serine-threonine recombinant regulation regulators response sativa sequence serine signal transcription transduction zipper by neils on 2007-12-04 03:22:13 as **
  • Prediction of phosphorylation sites using SVMs.
    Bioinformatics, Vol. 20, No. 17. (Nov 2004), pp. 3179-3184.
    by Jong H Kim, Juyoung Lee, Bermseok Oh, Kuchan Kimm, Insong Koh
    posted to algorithms alignment analysis article-predikin artificial binding chemical computer intelligence models molecular phosphorylation phosphotransferases protein proteins relationship sequence simulation sites structure-activity by neils on 2007-12-04 03:22:13 as **
  • Archaeal protein kinases and protein phosphatases: insights from genomics and biochemistry.
    Biochem J, Vol. 370, No. Pt 2. (Mar 2003), pp. 373-389.
    by Peter J Kennelly
    posted to activation archaea archaeal article-predikin enzyme kinases phosphatases phosphoprotein phosphorus phylogeny protein proteins radioisotopes by neils on 2007-12-04 03:22:13 as **
  • Amino acid substitution matrices from protein blocks.
    Proc Natl Acad Sci U S A, Vol. 89, No. 22. (Nov 1992), pp. 10915-10919.
    by S Henikoff, JG Henikoff
    posted to acid algorithms amino animals article-predikin caenorhabditis data drosophila elegans homology lod mathematics molecular probability proteins score sequence software by neils on 2007-12-04 03:22:12 as **
  • Induction of apoptosis by the Ste20-like kinase SLK, a germinal center kinase that activates apoptosis signal-regulating kinase and p38.
    J Biol Chem, Vol. 281, No. 6. (Feb 2006), pp. 3075-3084.
    by Wen Hao, Tomoko Takano, Julie Guillemette, Joan Papillon, Guohui Ren, Andrey V Cybulsky
    posted to activation aethiops animals apoptosis article-predikin calcium caspase caspases catalytic cell cells cercopithecus complementary cos cycle cytochromes densitometry dimerization dna dogs domain endoplasmic enzyme eukaryotic factor factor-2 glucose growth heat-shock hepatocyte hsp70 immunoblotting immunoprecipitation initiation injury ionophores jnk kinase kinases line map membrane mitogen-activated nerve p38 phosphorylation protein proteins protein-serine-threonine proto-oncogene rats reperfusion reticulum structure tertiary tissue tunicamycin by neils on 2007-12-04 03:22:12 as **
  • Characterization of cyclin L2, a novel cyclin with an arginine/serine-rich domain: phosphorylation by DYRK1A and colocalization with splicing factors.
    J Biol Chem, Vol. 279, No. 6. (Feb 2004), pp. 4612-4624.
    by Katrin de Graaf, Paul Hekerman, Oliver Spelten, Andreas Herrmann, Len C Packman, Konrad Büssow, Gerhard M Newen, Walter Becker
    posted to acid amino animals arginine article-predikin base cell cells complementary cos cyclins data dna factors fusion humans kinases male mice molecular nucleus phosphorylation protein proteins protein-serine-threonine protein-tyrosine rats recombinant rna sequence serine specificity splicing structure substrate tertiary transcription by neils on 2007-12-04 03:22:12 as **
  • Pfam: clans, web tools and services.
    Nucleic Acids Res, Vol. 34, No. Database issue. (Jan 2006), pp. D247-D251.
    by Robert D Finn, Jaina Mistry, Benjamin S Böckler, Sam G Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R Eddy, Erik LL Sonnhammer, Alex Bateman
    posted to alignment article-predikin chains computer databases graphics interface internet markov protein proteins sequence software structure tertiary user-computer by neils on 2007-12-04 03:22:12 as **
  • Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins.
    BMC Bioinformatics, Vol. 5 (Jun 2004)
    by Francesca Diella, Scott Cameron, Christine Gemünd, Rune Linding, Allegra Via, Bernhard Kuster, Thomas S Pontén, Nikolaj Blom, Toby J Gibson
    posted to animals article-predikin binding databases design humans mice phosphorylation post-translational processing protein proteins rats research sites software by neils on 2007-12-04 03:22:12 as **
  • Phosphorylation of the mitochondrial protein Sab by stress-activated protein kinase 3.
    Biochem Biophys Res Commun, Vol. 319, No. 1. (Jun 2004), pp. 130-137.
    by Naomi W Court, Ivana Kuo, Oonagh Quigley, Marie A Bogoyevitch
    posted to adaptor animals article-predikin binding cardiac carrier cell glutathione humans jnk kinase kinases line map mitochondria mitogen-activated mutagenesis mutation myocytes phosphorylation protein proteins rats serine signal signaling site-directed specificity structure substrate system tertiary transducing transferase by neils on 2007-12-04 03:22:12 as **
  • ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (Jul 2006), pp. W362-W365.
    by Edouard de Castro, Christian JA Sigrist, Alexandre Gattiker, Virginie Bulliard, Petra, Elisabeth Gasteiger, Amos Bairoch, Nicolas Hulo
    posted to acid acids amino analysis article-predikin databases homology interface internet protein proteins sequence software structure tertiary user-computer by neils on 2007-12-04 03:22:12 as **
  • Protein kinases associated with the yeast phosphoproteome.
    BMC Bioinformatics, Vol. 7 (2006)
    by Ross I Brinkworth, Alan L Munn, Bostjan Kobe
    posted to acid alignment amino analysis article-predikin cerevisiae data fungal interaction kinases mapping molecular phosphoproteins phosphorylation protein proteins proteome saccharomyces sequence specificity substrate by neils on 2007-12-04 03:22:12 as **
  • Sequence and structure-based prediction of eukaryotic protein phosphorylation sites.
    J Mol Biol, Vol. 294, No. 5. (Dec 1999), pp. 1351-1362.
    by N Blom, S Gammeltoft, S Brunak
    posted to acid amino animals article-nar article-predikin binding cells computer consensus eukaryotic glycosylation models molecular motifs networks neural nuclear of phosphoproteins phosphorylation phylogeny protein proteins reproducibility results sensitivity sequence serine sites specificity structure substrate tertiary threonine trans-activators tyrosine by neils on 2007-12-04 03:22:11 as **
  • AgBase: a unified resource for functional analysis in agriculture.
    Nucleic Acids Res, Vol. 35, No. Database issue. (Jan 2007), pp. D599-D603.
    by Fiona M Mccarthy, Susan M Bridges, Nan Wang, Bryce G Magee, Paul W Williams, Dawn S Luthe, Shane C Burgess
    posted to agricultural agriculture animals crops databases domestic genetic genomics integration interface internet proteins proteomics systems user-computer article-pka-pkg by neils on 2007-12-04 01:53:38 as **
  • The importance of intrinsic disorder for protein phosphorylation.
    Nucleic Acids Res, Vol. 32, No. 3. (2004), pp. 1037-1049.
    by Lilia M Iakoucheva, Predrag Radivojac, Celeste J Brown, Timothy R O'Connor, Jason G Sikes, Zoran Obradovic, Keith A Dunker
    posted to acids amino analysis animals databases internet of phosphorylation protein proteins proteome reproducibility results sequence article-pka-pkg by neils on 2007-12-04 01:53:37 as **
  • Distribution of IRAG and cGKI-isoforms in murine tissues.
    FEBS Lett, Vol. 575, No. 1-3. (2004), pp. 19-22.
    by A Geiselhöringer, M Gaisa, F Hofmann, J Schlossmann
    posted to 145-trisphosphate animals c57bl calcium cells channels cos cyclic cytoplasmic distribution endoplasmic fusion gmp-dependent hybridization in inbred inositol isoforms kinases mice muscle nuclear phosphoproteins protein proteins receptors recombinant reticulum signal situ smooth tissue transduction article-pka-pkg by neils on 2007-12-04 01:53:36 as **
  • Proteomic and computational analysis of secreted proteins with type I signal peptides from the Antarctic archaeon Methanococcoides burtonii.
    J Proteome Res, Vol. 5, No. 9. (Sep 2006), pp. 2457-2464.
    by Neil FW Saunders, Charmaine Ng, Mark Raftery, Michael Guilhaus, Amber Goodchild, Ricardo Cavicchioli
    posted to acid alignment amino analysis antarctic archaeal bibtex-import biology chromatography compounds computational data liquid mass methanosarcinaceae molecular organophosphorus protein proteins proteomics regions sequence signals sorting spectrometry by neils on 2007-11-23 05:17:31 as **
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