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neils' protein [109 articles]

Senaste hänvisningarna i neils' bibliotek insorterade under taggen protein. You can also see everyone's protein.
  • Amino acid contacts in proteins adapted to different temperatures: hydrophobic interactions and surface charges play a key role.
    Extremophiles : life under extreme conditions (30 September 2008)
    by Gisle Sælensminde, Oyvind Halskau, Inge Jonassen
    posted to thermophily temperature structure psychrophily protein mesophily contact by neils on 2008-10-02 00:06:48 as **
  • notes MetaMQAP: a meta-server for the quality assessment of protein models
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Marcin Pawlowski, Michal Gajda, Ryszard Matlak, Janusz Bujnicki
    posted to webserver structure quality protein models bioinformatics by neils on 2008-09-30 00:11:57 as **
  • Improving NMR protein structure quality by Rosetta refinement: A molecular replacement study
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Theresa A Ramelot, Srivatsan Raman, Alexandre P Kuzin, Rong Xiao, Li-Chung Ma, Thomas B Acton, John F Hunt, Gaetano T Montelione, David Baker, Michael A Kennedy
    posted to structure rosetta refinement protein nmr by neils on 2008-09-26 01:25:03 as ** along with 1 person sunhwan
  • Residue centrality, functionally important residues, and active site shape: analysis of enzyme and non-enzyme families.
    Protein Sci, Vol. 15, No. 9. (September 2006), pp. 2120-2128.
    by A del Sol, H Fujihashi, D Amoros, R Nussinov
    posted to structure residue protein network function enzyme centrality bioinformatics analysis by neils on 2008-09-17 07:37:18 as ** along with 4 people bicko drastic choonpeng massivemayhem
  • Ligand Binding and Circular Permutation Modify Residue Interaction Network in DHFR
    PLoS Comput Biol, Vol. 3, No. 6. (15 June 2007), e117.
    by Zengjian Hu, Donnell Bowen, William M Southerland, Del, Yongping Pan, Ruth Nussinov, Buyong Ma
    posted to structure protein network interaction dhfr analysis by neils on 2008-09-17 07:33:17 as **
  • Improved prediction of critical residues for protein function based on network and phylogenetic analyses.
    BMC Bioinformatics, Vol. 6 (2005)
    by B Thibert, DE Bredesen, G del Rio
    posted to structure protein prediction phylogeny network function bioinformatics by neils on 2008-09-17 07:30:55 as ** along with 3 people and 1 group pansapiens Einat sriram_s structural_bioinformatics
  • How accurate and statistically robust are catalytic site predictions based on closeness centrality?
    BMC Bioinformatics, Vol. 8 (11 May 2007), 153.
    by Eric Chea, Dennis R Livesay
    posted to structure-activity protein prediction network centrality catalytic bioinformatics by neils on 2008-09-17 07:28:00 as ** along with 2 people and 1 group Einat massivemayhem structural_bioinformatics
  • The Protein Data Bank: a historical perspective
    Acta Crystallographica Section A, Vol. 64, No. 1. (Jan 2008), pp. 88-95.
    by Helen M Berman
    posted to stucture review protein pdb history by neils on 2008-09-10 03:25:12 as **
  • Widespread changes in protein synthesis induced by microRNAs
    Nature (30 July 2008)
    by Matthias Selbach, Björn Schwanhäusser, Nadine Thierfelder, Zhuo Fang, Raya Khanin, Nikolaus Rajewsky
    posted to proteomics protein ncrna expression by neils on 2008-09-04 00:19:05 as ** along with 12 people and 2 groups heliopais vertikalist jfr caizhiqiang psique megraw j_rodriguez erel10 maralena reyez mtagaya gdb microRNA BTS-PT-AS-CS
  • Alignment of protein structures in the presence of domain motions
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Roberto Mosca, Barbara Brannetti, Thomas Schneider
    posted to alignment bioinformatics domain motion protein structure by neils on 2008-08-28 00:46:10 as ** along with 2 people reyez vinithepooh
  • Identification and correction of abnormal, incomplete and mispredicted proteins in public databases
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Alinda Nagy, Hedi Hegyi, Krisztina Farkas, Hedvig Tordai, Evelin Kozma, Laszlo Banyai, Laszlo Patthy
    posted to bioinformatics database errors prediction protein sequence structure by neils on 2008-08-28 00:42:01 as ** along with 2 people grahamc piergiorgioduca
  • Protein structure search and local structure characterization
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Shih Y Ku, Yuh J Hu
    posted to alphabet bioinformatics protein search structure by neils on 2008-08-23 02:16:28 as ** along with 2 people chad_davis reyez
  • Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i105-111.
    by Rafael Najmanovich, Natalja Kurbatova, Janet Thornton
    posted to binding discrimination ligand protein similarity structure by neils on 2008-08-11 00:37:28 as ** along with 2 people reyez nickolay
  • A Mitochondrial Protein Compendium Elucidates Complex I Disease Biology
    Cell, Vol. 134, No. 1. (11 July 2008), pp. 112-123.
    by David J Pagliarini, Sarah E Calvo, Betty Chang, Sunil A Sheth, Scott B Vafai, Shao-En Ong, Geoffrey A Walford, Canny Sugiana, Avihu Boneh, William K Chen, David E Hill, Marc Vidal, James G Evans, David R Thorburn, Steven A Carr, Vamsi K Mootha
    posted to bioinformatics complex-i disease localisation mitochondria protein scl by neils on 2008-07-11 00:27:50 as ** along with 4 people brianb ptrobajo raiyar mdstobbe
  • Structural Relationships Among the Ribosomal Stalk Proteins from the Three Domains of Life.
    Journal of molecular evolution (9 July 2008)
    by Przemysław Grela, Pau Bernadó, Dmitri Svergun, Jan Kwiatowski, Dariusz Abramczyk, Nikodem Grankowski, Marek Tchórzewski
    posted to evolution phylogeny ribosome structure protein by neils on 2008-07-11 00:18:55 as **
  • Protein structure protection commits gene expression patterns
    Genome Biology, Vol. 9 (07 July 2008), R107.
    by Jianping Chen, Han Liang, Ariel Fernandez
    posted to correlation disorder expression gene protein structure by neils on 2008-07-08 01:55:18 as ** along with 1 person daforerog
  • A protein functional leap: how a single mutation reverses the function of the transcription regulator TetR
    Nucl. Acids Res. (28 June 2008), gkn400.
    by Marcus Resch, Harald Striegl, Eva M Henssler, Madhumati Sevvana, Claudia Egerer-Sieber, Emile Schiltz, Wolfgang Hillen, Yves A Muller
    posted to mutation protein repressor structure-activity tet by neils on 2008-06-29 04:43:08 as **
  • PURE: a webserver for the prediction of domains in unassigned regions in proteins
    BMC Bioinformatics, Vol. 9 (14 June 2008), 281.
    by Chilamakuri CS Reddy, Shameer Khader, Bernard O Offmann, Ramanthan Sowdhamini
    posted to bioinformatics domain prediction protein webserver region by neils on 2008-06-15 10:50:02 as ** along with 1 person niallhaslam
  • The protein structure prediction problem could be solved using the current PDB library.
    Proc Natl Acad Sci U S A, Vol. 102, No. 4. (25 January 2005), pp. 1029-1034.
    by Y Zhang, J Skolnick
    posted to casp homology modelling pdb prediction protein structure by neils on 2008-06-12 07:42:10 as ** along with 9 people and 3 groups karbak iakes vavi marcius alexg j3xucite kracher schuylrp jfmuggs BioinfoCIPF Immunoinformatics SGU-CIPF
  • AMYPdb: a database dedicated to amyloid precursor proteins
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Sandrine Pawlicki, Antony Le Bechec, Christian Delamarche
    posted to amyloid database folding protein webserver by neils on 2008-06-10 12:58:59 as **
  • Single-molecule imaging of full protein synthesis by immobilized ribosomes
    Nucl. Acids Res. (29 May 2008), gkn338.
    by Sotaro Uemura, Ryo Iizuka, Taro Ueno, Yoshihiro Shimizu, Hideki Taguchi, Takuya Ueda, Joseph D Puglisi, Takashi Funatsu
    posted to immobilisation protein ribosome synthesis visualisation by neils on 2008-05-30 04:15:14 as **
  • PROMALS3D web server for accurate multiple protein sequence and structure alignments
    Nucl. Acids Res. (24 May 2008), gkn322.
    by Jimin Pei, Ming Tang, Nick V Grishin
    posted to alignment bioinformatics protein sequence structure webserver by neils on 2008-05-29 04:29:21 as **
  • Calling on a million minds for community annotation in WikiProteins
    Genome Biology, Vol. 9, No. 5. (2008)
    by Barend Mons, Michael Ashburner, Christine Chichester, Erik van Mulligen, Marc Weeber, Johan den Dunnen, Gert J van Ommen, Mark Musen, Matthew Cockerill, Henning Hermjakob, Albert Mons, Abel Packer, Roberto Pacheco, Suzanna Lewis, Alfred Berkeley, William Melton, Nickolas Barris, Jimmy Wales, Gerard Meijssen, Erik Moeller, Peter Roes, Katy Borner, Amos Bairoch
    posted to annotation community function protein wiki by neils on 2008-05-28 11:59:00 as ** along with 17 people and 1 group jfr yas AlexanderPico thomaskelder dullhunk tharris renatomilani chad_davis fpattyn sjc Katje jamselem ChrisEvelo carlk jyuh xingxu rholz microbiology_nijmegen
  • Terminal proteins of Streptomyces chromosome can target DNA into eukaryotic nuclei
    Nucl. Acids Res. (14 May 2008), gkm1170.
    by Hsiu-Hui Tsai, Chih-Hung Huang, Alan M Lin, Carton W Chen
    posted to eukaryotic nucleus scl streptomyces targeting protein by neils on 2008-05-15 04:29:13 as **
  • Cytochrome cd1 structure: unusual haem environments in a nitrite reductase and analysis of factors contributing to beta-propeller folds.
    Journal of molecular biology, Vol. 269, No. 3. (13 June 1997), pp. 440-455.
    by SC Baker, NF Saunders, AC Willis, SJ Ferguson, J Hajdu, V Fülöp
    posted to beta-propeller cytochrome haem nitrite protein reductase structure by neils on 2008-05-11 10:19:58 as ** along with 2 people and 1 group kinestetika pavanghatty microbiology_nijmegen
  • Haem-ligand switching during catalysis in crystals of a nitrogen-cycle enzyme.
    Nature, Vol. 389, No. 6649. (25 September 1997), pp. 406-412.
    by PA Williams, V Fülöp, EF Garman, NF Saunders, SJ Ferguson, J Hajdu
    posted to crystallography haem mechanism nitrite protein reductase structure by neils on 2008-05-11 10:18:50 as **
  • Predicted roles for hypothetical proteins in the low-temperature expressed proteome of the Antarctic archaeon Methanococcoides burtonii.
    Journal of proteome research, Vol. 4, No. 2. (r 2005), pp. 464-472.
    by NF Saunders, A Goodchild, M Raftery, M Guilhaus, PM Curmi, R Cavicchioli
    posted to antarctic archaea bioinformatics function methanococcoides prediction psychrophily protein by neils on 2008-05-11 10:09:25 as **
  • Improved success of sparse matrix protein crystallization screening with heterogeneous nucleating agents.
    PLoS ONE, Vol. 2, No. 10. (2007)
    by AS Thakur, G Robin, G Guncar, NF Saunders, J Newman, JL Martin, B Kobe
    posted to crystallography nucleation protein screen by neils on 2008-05-11 10:06:39 as **
  • notes Computational evidence for the catalytic mechanism of glutaminyl cyclase. A DFT investigation
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Matteo Calvaresi, Marco Garavelli, Andrea Bottoni
    posted to catalysis computational dft protein structure by neils on 2008-05-10 09:12:23 as **
  • Fast protein tertiary structure retrieval based on global surface shape similarity
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (xx 2008)
    by Lee Sael, Bin Li, David La, Yi Fang, Karthik Ramani, Raif Rustamov, Daisuke Kihara
    posted to bioinformatics prediction protein retrieval structure by neils on 2008-05-09 10:19:56 as **
  • Protein Disorder Is Positively Correlated with Gene Expression in Escherichia coli
    J. Proteome Res. (9 May 2008)
    by Oleg Paliy, Shawn M Gargac, Yugong Cheng, Vladimir N Uversky, Keith A Dunker
    posted to disorder ecoli expression protein structure by neils on 2008-05-09 07:51:04 as **
  • The Leucine-Rich Repeat Domain of Internalin B Folds along a Polarized N-Terminal Pathway
    Structure, Vol. 16 (May 2008), pp. 705-714.
    by Naomi Courtemanche, Doug Barrick
    posted to folding leucine lrr pathway protein repeat by neils on 2008-05-07 02:37:18 as **
  • Vertebrate Genomes Code Excess Proteins with Charge Periodicity of 28 Residues
    J Biochem, Vol. 143, No. 5. (1 May 2008), pp. 661-665.
    by Runcong Ke, Noriyuki Sakiyama, Ryusuke Sawada, Masashi Sonoyama, Shigeki Mitaku
    posted to charge genomics nuclear periodicity protein vertebrate sequence by neils on 2008-05-06 14:13:37 as **
  • SCPRED: Accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Lukasz Kurgan, Krzysztof Cios, Ke Chen
    posted to bioinformatics prediction protein sequence structure by neils on 2008-05-02 00:27:57 as **
  • An evaluation of automated homology modelling methods at low target template sequence similarity
    Bioinformatics, Vol. 23, No. 15. (1 August 2007), pp. 1901-1908.
    by James A Dalton, Richard M Jackson
    posted to bioinformatics evaluation homology modelling prediction protein structure by neils on 2008-04-26 12:05:56 as ** along with 5 people cdeane chad_davis biehl pansapiens marti
  • Constructing templates for protein structure prediction by simulation of protein folding pathways
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Ilona Kifer, Ruth Nussinov, Haim J Wolfson
    posted to folding modelling prediction protein simulation structure by neils on 2008-04-25 01:52:40 as **
  • Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3635-3641.
    by JC Obenauer, LC Cantley, MB Yaffe
    posted to analysis article-nar article-predikin binding internet motifs phosphorylation protein proteome sequence signal sites software structure transduction amino-acid database algorithm by neils on 2008-04-24 16:16:06 as ** along with 2 people mloewer Evangelia
  • Site-Specific Phosphorylation Profiling of Arabidopsis Proteins by Mass Spectrometry and Peptide Chip Analysis
    J. Proteome Res. (24 April 2008)
    by Sergio de la Fuente van Bentem, Dorothea Anrather, Ilse Dohnal, Elisabeth Roitinger, Edina Csaszar, Jos Joore, Joshua Buijnink, Alessandro Carreri, Celine Forzani, Zdravko J Lorkovic, Andrea Barta, David Lecourieux, Andreas Verhounig, Claudia Jonak, Heribert Hirt
    posted to arabidopsis chip peptide phosphorylation plant mass-spec protein by neils on 2008-04-24 06:46:05 as ** along with 2 people cjhall brianb
  • Pfam 10 years on: 10 000 families and still growing.
    Brief Bioinform (15 March 2008)
    by Stephen John J Sammut, Robert D D Finn, Alex Bateman
    posted to classification family hmm pfam protein by neils on 2008-04-23 13:49:11 as ** along with 2 people dullhunk renatomilani
  • Genome-wide subcellular localization of putative outer membrane and extracellular proteins in Leptospira interrogans serovar Lai genome using bioinformatics approaches
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Wasna Viratyosin, Supawadee Ingsriswang, Eakasit Pacharawongsakda, Prasit Palittapongarnpim
    posted to bacteria bioinformatics genomics leptospira localisation membrane pathogen prediction protein scl secretion by neils on 2008-04-21 05:05:55 as ** along with 1 person sitake
  • Identification of Proteins Secreted by Malaria Parasite into Erythrocyte using SVM and PSSM profiles
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Ruchi Verma, Ajit Tiwari, Sukhwinder Kaur, Grish Varshney, Gajendra Raghava
    posted to bioinformatics erythrocyte machine-learning malaria prediction pssm secretion svm protein by neils on 2008-04-17 00:31:17 as ** along with 1 person arNQ
  • The solution structure of ZNF593 from Homo sapiens reveals a zinc finger in a predominately unstructured protein
    Protein Sci, Vol. 17, No. 3. (1 March 2008), pp. 571-576.
    by Paulette L Hayes, Betsy L Lytle, Brian F Volkman, Francis C Peterson
    posted to dna-binding human nmr protein structure znf by neils on 2008-04-10 00:01:30 as **
  • Crystal structure of GH13 alpha-glucosidase GSJ from one of the deepest sea bacteria
    by Tsuyoshi Shirai, Vo S Hung, Katsuhito Morinaka, Tohru Kobayashi, Susumu Ito
    posted to barophile crystallography glucosidase protein structure by neils on 2008-04-09 04:14:21 as **
  • Crystal structure of PAE0151 from <I>Pyrobaculum aerophilum</I>, a PIN-domain (VapC) protein from a toxin-antitoxin operon
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Richard D Bunker, Joanna L Mckenzie, Edward N Baker, Vickery L Arcus
    posted to antitoxin archaea crystallography protein pyrobaculum structure toxin by neils on 2008-04-09 04:13:35 as **
  • High-Throughput, Combinatorial Engineering of Initial Codons for Tunable Expression of Recombinant Proteins
    J. Proteome Res. (4 April 2008)
    by Jin-Ho Ahn, Jung-Won Keum, Dong-Myung Kim
    posted to codon expression recombinant usage protein by neils on 2008-04-04 07:14:07 as ** along with 1 person jyuh
  • How to lose a kink and gain a helix: pH independent conformational changes of the fusion domains from influenza hemagglutinin in heterogeneous lipid bilayers
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Hyunbum Jang, Naveen Michaud-Agrawal, Jennifer M Johnston, Thomas B Woolf
    posted to fusion haemagglutinin influenza lipid protein simulation structure virus by neils on 2008-04-01 23:23:52 as ** along with 1 person sunhwan
  • ParCrys: a Parzen window density estimation approach to protein crystallization propensity prediction
    Bioinformatics, Vol. 24, No. 7. (1 April 2008), pp. 901-907.
    by Ian M Overton, Gianandrea Padovani, Mark A Girolami, Geoffrey J Barton
    posted to bioinformatics crystallography prediction propensity protein structural-genomics by neils on 2008-03-26 23:39:33 as **
  • Fast protein tertiary structure retrieval based on global surface shape similarity.
    Proteins (24 March 2008)
    by Lee Sael, Bin Li, David La, Yi Fang, Karthik Ramani, Raif Rustamov, Daisuke Kihara
    posted to bioinformatics protein search structure surface by neils on 2008-03-26 23:34:48 as ** along with 1 person CameronNeylon
  • Biological roles of specific peptides in enzymes
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Yasmine Meroz, David Horn
    posted to bioinformatics enzyme function protein peptide by neils on 2008-02-28 23:51:36 as **
  • Protein production and purification.
    Nat Methods, Vol. 5, No. 2. (February 2008), pp. 135-146.
    by S Gräslund, P Nordlund, J Weigelt, J Bray, O Gileadi, S Knapp, U Oppermann, C Arrowsmith, R Hui, J Ming, S Dhe-Paganon, HW Park, A Savchenko, A Yee, A Edwards, R Vincentelli, C Cambillau, R Kim, SH Kim, Z Rao, Y Shi, TC Terwilliger, CY Kim, LW Hung, GS Waldo, Y Peleg, S Albeck, T Unger, O Dym, J Prilusky, JL Sussman, RC Stevens, SA Lesley, IA Wilson, A Joachimiak, F Collart, I Dementieva, MI Donnelly, WH Eschenfeldt, Y Kim, L Stols, R Wu, M Zhou, SK Burley, JS Emtage, JM Sauder, D Thompson, K Bain, J Luz, T Gheyi, F Zhang, S Atwell, SC Almo, JB Bonanno, A Fiser, S Swaminathan, FW Studier, MR Chance, A Sali, TB Acton, R Xiao, L Zhao, LC Ma, JF Hunt, L Tong, K Cunningham, M Inouye, S Anderson, H Janjua, R Shastry, CK Ho, D Wang, H Wang, M Jiang, GT Montelione, DI Stuart, RJ Owens, S Daenke, A Schütz, U Heinemann, S Yokoyama, K Büssow, KC Gunsalus
    posted to expression genomics purification structure structural-genomics protein by neils on 2008-02-01 14:58:52 as ** along with 4 people dchughes Yanno hchmani jyuh
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