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neils' interaction [41 articles]

Senaste hänvisningarna i neils' bibliotek insorterade under taggen interaction. You can also see everyone's interaction.
  • Contextual Specificity in Peptide-Mediated Protein Interactions
    PLoS ONE, Vol. 3, No. 7. (2 July 2008), e2524.
    by Amelie Stein, Patrick Aloy
    posted to specificity protein-protein peptide interaction energy context binding by neils on 2008-07-06 01:23:12 as **
  • Deducing topology of protein-protein interaction networks from experimentally measured sub-networks
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Ling Yang, Thomas Vondriska, Zhangang Han, Robb Maclellan, James Weiss, Zhilin Qu
    posted to topology protein-protein networks interaction bioinformatics by neils on 2008-07-04 00:29:49 as ** along with 2 people brianb renatomilani
  • A General System for Studying Protein-Protein Interactions in Gram-Negative Bacteria
    J. Proteome Res. (1 July 2008)
    by Dale A Pelletier, Gregory B Hurst, Linda J Foote, Patricia K Lankford, Catherine K Mckeown, Tse-Yuan Lu, Denise D Schmoyer, Manesh B Shah, Judson W Hervey, Hayes W Mcdonald, Brian S Hooker, William R Cannon, Don S Daly, Jason M Gilmore, Steven H Wiley, Deanna L Auberry, Yisong Wang, Frank W Larimer, Stephen J Kennel, Mitchel J Doktycz, Jennifer L Morrell-Falvey, Elizabeth T Owens, Michelle V Buchanan
    posted to tags protein-protein interaction bacteria affinity by neils on 2008-07-01 13:24:33 as ** along with 1 person brianb
  • The topology of the bacterial co-conserved protein network and its implications for predicting protein function
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Anis K Fard, Sonia Leach, Lawrence Hunter, Ryan Gill
    posted to topology protein-protein network interaction bacteria by neils on 2008-07-01 00:32:28 as **
  • Co-Evolving Motions at Protein-Protein Interfaces of Two-Component Signaling Systems Identified by Covariance Analysis
    Biochemistry (28 June 2008)
    by Hendrik Szurmant, Benjamin G Bobay, Robert A White, Daniel M Sullivan, Richele J Thompson, Terence Hwa, James A Hoch, John Cavanagh
    posted to two-component protein-protein nmr interaction dynamics covariance analysis by neils on 2008-06-28 09:02:46 as ** along with 2 people marck paulschlesinger
  • Global investigation of protein-protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences
    Nucl. Acids Res. (27 June 2008), gkn390.
    by S Pitre, C North, M Alamgir, M Jessulat, A Chan, X Luo, JR Green, M Dumontier, F Dehne, A Golshani
    posted to yeast protein-protein prediction peptides interaction bioinformatics by neils on 2008-06-28 03:28:18 as ** along with 3 people renatomilani brianb pansapiens
  • Protein complex identification by supervised graph local clustering
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i250-268.
    by Yanjun Qi, Fernanda Balem, Christos Faloutsos, Judith Klein-Seetharaman, Ziv Bar-Joseph
    posted to protein-protein interaction graph complexes clustering bioinformatics by neils on 2008-06-28 01:53:59 as ** along with 1 person chad_davis
  • Assembly reflects evolution of protein complexes
    Nature (18 June 2008)
    by Emmanuel D Levy, Elisabetta B Erba, Carol V Robinson, Sarah A Teichmann
    posted to structure quaternary protein-protein interaction evolution complexes assembly by neils on 2008-06-26 03:53:59 as ** along with 5 people psique phoenixzxl zwang jwm paulschlesinger
  • The Landscape of Human Proteins Interacting with Viruses and Other Pathogens
    PLoS Pathog, Vol. 4, No. 2. (Feb 2008)
    by Matthew D Dyer, Murali, Bruno W Sobral
    posted to virus protein-protein pathogen interaction human database bioinformatics by neils on 2008-06-18 13:51:04 as **
  • Inferring modules of functionally interacting proteins using the Bond Energy Algorithm.
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Ryosuke Watanabe, Enrique Morett, Edgar Vallejo
    posted to protein-protein prediction interaction energy algorithms by neils on 2008-06-18 00:57:15 as **
  • The Binary Protein Interactome of Treponema pallidum – The Syphilis Spirochete
    PLoS ONE, Vol. 3, No. 5. (May 2008)
    by Björn Titz, Seesandra V Rajagopala, Johannes Goll, Roman Häuser, Matthew T Mckevitt, Timothy Palzkill, Peter Uetz
    posted to treponema spirochaete protein-protein interaction binary by neils on 2008-05-31 13:44:36 as **
  • PIE: an online prediction system for protein-protein interactions from text
    Nucl. Acids Res. (28 May 2008), gkn281.
    by Sun Kim, Soo-Yong Shin, In-Hee Lee, Soo-Jin Kim, Ram Sriram, Byoung-Tak Zhang
    posted to webserver text-mining protein-protein prediction interaction bioinformatics by neils on 2008-05-29 03:02:27 as ** along with 1 person tharris
  • Prediction of enzyme function by combining sequence similarity and protein interactions
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Jordi Espadaler, Narayanan Eswar, Enric Querol, Francesc Aviles, Andrej Sali, Marc M Renom, Baldomero Oliva
    posted to sequence protein-protein prediction interaction function enzyme bioinformatics by neils on 2008-05-28 01:05:07 as **
  • Evolution and dynamics of protein interactions and networks
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Emmanuel D Levy, Jose B Pereira-Leal
    posted to review protein-protein networks interaction evolution by neils on 2008-05-15 07:54:50 as ** along with 4 people marck paolomarcatili cabbagesofdoom jyuh
  • Estimating the size of the human interactome
    Proceedings of the National Academy of Sciences (12 May 2008), 0708078105.
    by Michael P Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong J An, Michael Lappe, Carsten Wiuf
    posted to protein-protein prediction network interactome interaction human bioinformatics by neils on 2008-05-14 04:39:31 as ** along with 18 people chad_davis Evangelia balicea marck paolomarcatili sanchezbuelna cabbagesofdoom xingxu mjoach jyuh chrissp100 zwang roys brianb friendpine Ema tmmurali phoenixzxl
  • Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Andrew Bordner, Andrey Gorin
    posted to protein-protein pdb interface interaction complexes bioinformatics by neils on 2008-05-13 00:10:20 as ** along with 1 person phoenixzxl
  • An in Vivo Map of the Yeast Protein Interactome
    Science (8 May 2008), 1153878.
    by Kirill Tarassov, Vincent Messier, Christian R Landry, Stevo Radinovic, Mercedes M Molina, Igor Shames, Yelena Malitskaya, Jackie Vogel, Howard Bussey, Stephen W Michnick
    posted to yeast protein-protein mapping interaction complexes by neils on 2008-05-13 00:02:02 as ** along with 7 people tmmurali aubinhon grahamc jyuh brianb cabbagesofdoom phoenixzxl
  • Functional Maps of Protein Complexes from Quantitative Genetic Interaction Data
    PLoS Comput Biol, Vol. 4, No. 4. (Apr 2008)
    by Sourav Bandyopadhyay, Ryan Kelley, Nevan J Krogan, Trey Ideker
    posted to bioinformatics complexes genetic interaction networks prediction protein-protein by neils on 2008-04-21 03:13:52 as **
  • Predicting Co-Complexed Protein Pairs from Heterogeneous Data
    PLoS Comput Biol, Vol. 4, No. 4. (Apr 2008)
    by Jian Qiu, William S Noble
    posted to bioinformatics complexes interaction kernels prediction protein-protein by neils on 2008-04-21 03:12:15 as ** along with 1 person brianb
  • Calculation of protein-ligand binding affinities.
    Annu Rev Biophys Biomol Struct, Vol. 36 (2007), pp. 21-42.
    by MK Gilson, HX Zhou
    posted to calculation docking interaction lie modelling protein-ligand review by neils on 2008-04-14 04:06:03 as ** along with 4 people ras dimka hmk ashaytan
  • Analyzing Protein Interaction Networks Using Structural Information
    Annual Review of Biochemistry, Vol. 77, No. 1. (2008)
    by Christina Kiel, Pedro Beltrao, Luis Serrano
    posted to bioinformatics interaction network protein-protein structure by neils on 2008-04-11 01:44:07 as ** along with 3 people paolomarcatili grahamc Evangelia
  • Genome-Wide Prediction of SH2 Domain Targets Using Structural Information and the FoldX Algorithm
    PLoS Comput Biol, Vol. 4, No. 4. (Apr 2008)
    by Ignacio E Sánchez, Pedro Beltrao, Francois Stricher, Joost Schymkowitz, Jesper F Borg, Frederic Rousseau, Luis Serrano
    posted to bioinformatics interaction protein-protein sh2 specificity by neils on 2008-04-09 02:23:44 as **
  • Genome-wide inference of protein interaction sites: lessons from the yeast high-quality negative protein-protein interaction dataset.
    Nucleic Acids Res (14 February 2008)
    by Jie Guo, Xiaomei Wu, Da-Yong Y Zhang, Kui Lin
    posted to dataset genomics interaction negative protein-protein quality yeast by neils on 2008-04-04 00:20:29 as ** along with 4 people paolomarcatili tmmurali kluck stef_lise
  • Large-scale screening for novel low-affinity extracellular protein interactions
    Genome Res. (22 February 2008), gr.7187808.
    by Mark K Bushell, Christian Sollner, Benjamin Schuster-Boeckler, Alex Bateman, Gavin J Wright
    posted to avexis extracellular interaction protein-protein screen secretion by neils on 2008-04-02 02:27:27 as ** along with 9 people carlk paolomarcatili kluck niallhaslam jyuh tmmurali Dualsystems grahamc zwang
  • Intrinsically Disordered Proteins Display No Preference for Chaperone Binding In Vivo
    PLoS Comput Biol, Vol. 4, No. 3. (Mar 2008)
    by Hedi Hegyi, Peter Tompa
    posted to bioinformatics chaperones disorder interaction protein-protein by neils on 2008-03-13 04:46:07 as **
  • Mapping the Integrin-Linked Kinase Interactome Using SILAC
    J. Proteome Res. (10 March 2008)
    by Iveta Dobreva, Andrew Fielding, Leonard J Foster, Shoukat Dedhar
    posted to integrin interaction kinases methods proteomics silac by neils on 2008-03-10 06:20:23 as **
  • Evolution of protein domain promiscuity in eukaryotes
    Genome Res. (29 January 2008), gr.6943508.
    by Malay K Basu, Liran Carmel, Igor B Rogozin, Eugene V Koonin
    posted to domain evolution interaction prokaryotes protein-protein by neils on 2008-02-29 23:20:27 as ** along with 6 people carlk saket dchughes michC grahamc zwang
  • A computational approach for detecting peptidases and their specific inhibitors at the genome level.
    BMC Bioinformatics, Vol. 8 Suppl 1 (2007)
    by L Bartoli, R Calabrese, P Fariselli, DG Mita, R Casadio
    posted to bioinformatics inhibitors interaction peptidase prediction protein-protein by neils on 2008-01-28 07:31:30 as **
  • Computational analysis and prediction of the binding motif and protein interacting partners of the Abl SH3 domain.
    PLoS Comput Biol, Vol. 2, No. 1. (January 2006)
    by T Hou, K Chen, WA McLaughlin, B Lu, W Wang
    posted to abl bioinformatics domain interaction prediction protein-protein sh3 by neils on 2008-01-24 08:10:57 as ** along with 3 people carlescorbi Evangelia biehl
  • Enhancing the prediction of protein pairings between interacting families using orthology information
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Jose Izarzugaza, David Juan, Carles Pons, Florencio Pazos, Alfonso Valencia
    posted to bioinformatics interaction orthology phylogeny prediction protein-protein by neils on 2008-01-24 02:01:55 as ** along with 1 person chad_davis
  • Protein interactions in human genetic diseases
    Genome Biology, Vol. 9, No. 1. (2008)
    by Benjamin S Bockler, Alex Bateman
    posted to bioinformatics disease interaction protein-protein by neils on 2008-01-17 01:57:31 as ** along with 9 people and 1 group barry balicea frohike grahamc aconesa biomcgary barriot mingzhi mclarenv Bioinformatics
  • Protein-protein interaction networks and biology—what's the connection?
    Nature Biotechnology, Vol. 26, No. 1., pp. 69-72.
    by Luke Hakes, John W Pinney, David L Robertson, Simon C Lovell
    posted to editorial interaction networks protein-protein by neils on 2008-01-12 03:27:37 as ** along with 14 people and 1 group paolomarcatili Yanno jyuh tmmurali jfr balicea dullhunk mikaelhuss cjeans nedwards biehl shikin mclarenv Yumyai GeneGo
  • Evolutionary cores of domain co-occurrence networks.
    BMC Evol Biol, Vol. 5, No. 1. (2005)
    by S Wuchty, E Almaas
    posted to co-occurrence domains evolution interaction networks by neils on 2008-01-10 05:36:03 as ** along with 2 people tny stajich
  • Comprehensive analysis of co-occurring domain sets in yeast proteins
    BMC Genomics, Vol. 8 (11 June 2007), 161.
    by Inbar Cohen-Gihon, Ruth Nussinov, Roded Sharan
    posted to co-occurrence domains interaction proteins yeast by neils on 2008-01-10 05:32:08 as **
  • Statistical analysis of domains in interacting protein pairs
    Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 993-1001.
    by MW Nye, Berzuini Carlo, R Gilks, Babu M Madan, A Teichmann
    posted to domains interaction protein statistics by neils on 2008-01-10 05:27:14 as ** along with 5 people and 1 group lfriedl chad_davis wnpx iris_2001 phoenixzxl kdl
  • Inferring domain-domain interactions from protein-protein interactions.
    Genome Res, Vol. 12, No. 10. (October 2002), pp. 1540-1548.
    by M Deng, S Mehta, F Sun, T Chen
    posted to bioinformatics domains interaction prediction by neils on 2008-01-10 05:26:02 as ** along with 6 people carlk maryee opheliav wnpx Pao-Yang phoenixzxl
  • Computational methods for protein-protein interaction and their application.
    Curr Protein Pept Sci, Vol. 6, No. 5. (October 2005), pp. 443-449.
    by TL Shi, YX Li, YD Cai, KC Chou
    posted to bioinformatics interaction networks prediction proteins by neils on 2007-12-10 00:07:11 as ** along with 1 person bicko
  • A new computational approach to analyze human protein complexes and predict novel protein interactions
    Genome Biology, Vol. 8, No. 12. (2007)
    by Sara Zanivan, Ilaria Cascone, Chiara Peyron, Ivan Molineris, Serena Marchio, Michele Caselle, Federico Bussolino
    posted to bioinformatics interaction kinase p21-activated prediction protein by neils on 2007-12-05 01:24:31 as ** along with 2 people grahamc barriot
  • Protein kinase specificity. A strategic collaboration between kinase peptide specificity and substrate recruitment.
    Cell Cycle, Vol. 4, No. 1. (Jan 2005), pp. 52-56.
    by Guozhi Zhu, Yin Liu, Stephen Shaw
    posted to acid activation amino article-predikin enzyme fragments humans interaction kinases mapping peptide peptides phosphorylation protein sequence signal specificity substrate transduction by neils on 2007-12-04 03:22:14 as **
  • Protein kinases associated with the yeast phosphoproteome.
    BMC Bioinformatics, Vol. 7 (2006)
    by Ross I Brinkworth, Alan L Munn, Bostjan Kobe
    posted to acid alignment amino analysis article-predikin cerevisiae data fungal interaction kinases mapping molecular phosphoproteins phosphorylation protein proteins proteome saccharomyces sequence specificity substrate by neils on 2007-12-04 03:22:12 as **
  • Scoring of predicted GRK2 phosphorylation sites in Nedd4-2.
    Bioinformatics, Vol. 22, No. 18. (Sep 2006), pp. 2192-2195.
    by Jonathan W Arthur, Angeles S Perez, David I Cook
    posted to acid algorithms alignment amino analysis article-predikin artificial beta-adrenergic binding chemical computer data g-protein-coupled homology intelligence interaction kinase kinases ligases mapping models molecular phosphorylation protein receptor sequence simulation sites ubiquitin-protein by neils on 2007-12-04 03:22:11 as **
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