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neils' alignment [15 articles]

Senaste hänvisningarna i neils' bibliotek insorterade under taggen alignment. You can also see everyone's alignment.
  • TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model
    BMC Bioinformatics, Vol. 9 (31 August 2008), 358.
    by Mallika Veeramalai, Yuzhen Ye, Adam Godzik
    posted to alignment bioinformatics prediction software structural by neils on 2008-09-01 01:38:46 as ** along with 2 people trevinor reyez
  • Alignment of protein structures in the presence of domain motions
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Roberto Mosca, Barbara Brannetti, Thomas Schneider
    posted to alignment bioinformatics domain motion protein structure by neils on 2008-08-28 00:46:10 as ** along with 2 people reyez vinithepooh
  • PROMALS3D web server for accurate multiple protein sequence and structure alignments
    Nucl. Acids Res. (24 May 2008), gkn322.
    by Jimin Pei, Ming Tang, Nick V Grishin
    posted to alignment bioinformatics protein sequence structure webserver by neils on 2008-05-29 04:29:21 as **
  • RIO1, an extraordinary novel protein kinase.
    FEBS Lett, Vol. 524, No. 1-3. (31 July 2002), pp. 31-36.
    by M Angermayr, W Bandlow
    posted to alignment kinase rio domain by neils on 2008-01-04 07:05:31 as **
  • PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory.
    BMC Bioinformatics, Vol. 7 (2006)
    by Yu Xue, Ao Li, Lirong Wang, Huanqing Feng, Xuebiao Yao
    posted to alignment analysis article-nar article-predikin bayes binding data molecular phosphorylation protein sequence sites software theorem amino-acid kinase by neils on 2007-12-04 03:22:14 as **
  • SMART 5: domains in the context of genomes and networks.
    Nucleic Acids Res, Vol. 34, No. Database issue. (Jan 2006), pp. D257-D260.
    by Ivica Letunic, Richard R Copley, Birgit Pils, Stefan Pinkert, Jörg Schultz, Peer Bork
    posted to alignment analysis article-nar article-pka-pkg article-predikin biological catalysis catalytic domain genomics interface internet models multiprotein protein sequence structure tertiary user-computer database complex by neils on 2007-12-04 03:22:13 as **
  • Structural modes of stabilization of permissive phosphorylation sites in protein kinases: distinct strategies in Ser/Thr and Tyr kinases.
    J Mol Biol, Vol. 339, No. 5. (Jun 2004), pp. 1025-1039.
    by A Krupa, G Preethi, N Srinivasan
    posted to activation adenosine alignment article-predikin catalytic data domain enzyme models molecular phosphorylation protein protein-serine-threonine protein-tyrosine sequence signal structure tertiary transduction triphosphate amino-acid kinase by neils on 2007-12-04 03:22:13 as **
  • Prediction of phosphorylation sites using SVMs.
    Bioinformatics, Vol. 20, No. 17. (Nov 2004), pp. 3179-3184.
    by Jong H Kim, Juyoung Lee, Bermseok Oh, Kuchan Kimm, Insong Koh
    posted to alignment analysis article-predikin artificial binding chemical computer intelligence models molecular phosphorylation protein relationship sequence simulation sites structure-activity algorithm phosphotransferase by neils on 2007-12-04 03:22:13 as **
  • BRSK2 is activated by cyclic AMP-dependent protein kinase A through phosphorylation at Thr260.
    Biochem Biophys Res Commun, Vol. 347, No. 4. (Sep 2006), pp. 867-871.
    by Zekun Guo, Wenwen Tang, Jian Yuan, Xinya Chen, Bo Wan, Xiuting Gu, Kuntian Luo, Yingli Wang, Long Yu
    posted to activation alignment amp-dependent article-predikin cyclic data enzyme molecular phosphorylation protein protein-serine-threonine sequence threonine amino-acid kinase by neils on 2007-12-04 03:22:12 as **
  • Pfam: clans, web tools and services.
    Nucleic Acids Res, Vol. 34, No. Database issue. (Jan 2006), pp. D247-D251.
    by Robert D Finn, Jaina Mistry, Benjamin S Böckler, Sam G Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R Eddy, Erik LL Sonnhammer, Alex Bateman
    posted to alignment article-predikin computer graphics interface internet markov protein sequence software structure tertiary user-computer chain database by neils on 2007-12-04 03:22:12 as **
  • Profile hidden Markov models.
    Bioinformatics, Vol. 14, No. 9. (1998), pp. 755-763.
    by SR Eddy
    posted to alignment article-nar article-predikin hmm library markov peptide sequence software chain by neils on 2007-12-04 03:22:12 as **
  • A kinase sequence database: sequence alignments and family assignment.
    Bioinformatics, Vol. 18, No. 9. (Sep 2002), pp. 1274-1275.
    by Oleksandr Buzko, Kevan M Shokat
    posted to alignment analysis article-predikin cluster database homology information internet management protein retrieval sequence storage kinase system by neils on 2007-12-04 03:22:12 as **
  • Protein kinases associated with the yeast phosphoproteome.
    BMC Bioinformatics, Vol. 7 (2006)
    by Ross I Brinkworth, Alan L Munn, Bostjan Kobe
    posted to alignment analysis article-predikin cerevisiae data interaction mapping molecular phosphorylation protein proteome saccharomyces sequence specificity substrate amino-acid fungi kinase phosphoprotein by neils on 2007-12-04 03:22:12 as **
  • Scoring of predicted GRK2 phosphorylation sites in Nedd4-2.
    Bioinformatics, Vol. 22, No. 18. (Sep 2006), pp. 2192-2195.
    by Jonathan W Arthur, Angeles S Perez, David I Cook
    posted to alignment analysis article-predikin artificial beta-adrenergic binding chemical computer data g-protein-coupled homology intelligence interaction kinase ligases mapping models molecular phosphorylation protein receptor sequence simulation sites ubiquitin-protein amino-acid algorithm by neils on 2007-12-04 03:22:11 as **
  • Proteomic and computational analysis of secreted proteins with type I signal peptides from the Antarctic archaeon Methanococcoides burtonii.
    J Proteome Res, Vol. 5, No. 9. (Sep 2006), pp. 2457-2464.
    by Neil FW Saunders, Charmaine Ng, Mark Raftery, Michael Guilhaus, Amber Goodchild, Ricardo Cavicchioli
    posted to alignment analysis antarctic bibtex-import biology chromatography compounds computational data liquid methanosarcinaceae molecular organophosphorus protein proteomics sequence sorting mass-spec amino-acid region signal archaea by neils on 2007-11-23 05:17:31 as **
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