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nedwards' denovo-interpretation [28 articles]

Senaste hänvisningarna i nedwards' bibliotek insorterade under taggen denovo-interpretation. You can also see everyone's denovo-interpretation.
  • De Novo Peptide Identification via Tandem Mass Spectrometry and Integer Linear Optimization
    Anal. Chem., Vol. 79, No. 4. (15 February 2007), pp. 1433-1446.
    by PA Dimaggio, CA Floudas
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-01-03 21:02:10 as **
  • Robust accurate identification of peptides (RAId): deciphering MS2 data using a structured library search with de novo based statistics
    Bioinformatics, Vol. 21, No. 19. (1 October 2005), pp. 3726-3732.
    by Gelio Alves, Yi-Kuo Yu
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-01-03 20:53:55 as **
  • PepNovo: De Novo Peptide Sequencing via Probabilistic Network Modeling
    Anal. Chem., Vol. 77, No. 4. (15 February 2005), pp. 964-973.
    by A Frank, P Pevzner
    posted to denovo-interpretation peptide-identification peptide-spectrum-score proteomics tandem-mass-spectrometry by nedwards on 2007-11-07 21:13:46 as **
  • De Novo peptide sequencing via tandem mass spectrometry: a graph-theoretical approach
    (1999), pp. 135-144.
    by Vlado Dancik, Theresa A Addona, Karl R Clauser, James E Vath, Pavel A Pevzner
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-10-10 19:55:35 as **
  • Prediction of Low-Energy Collision-Induced Dissociation Spectra of Peptides with Three or More Charges
    Anal. Chem., Vol. 77, No. 19. (1 October 2005), pp. 6364-6373.
    by Z Zhang
    posted to denovo-interpretation peptide-identification tandem-mass-spectrometry proteomics by nedwards on 2007-09-05 16:02:25 as **
  • A dynamic programming approach to de novo peptide sequencing via tandem mass spectrometry
    (2000), pp. 389-398.
    by Ting Chen, Ming-Yang Kao, Matthew Tepel, John Rush, George M Church
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 20:36:21 as ** along with 1 person antoniochiao
  • Searching sequence databases via de novo peptide sequencing by tandem mass spectrometry.
    Mol Biotechnol, Vol. 22, No. 3. (November 2002), pp. 301-315.
    by RS Johnson, JA Taylor
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:37:05 as **
  • Sequence optimization as an alternative to de novo analysis of tandem mass spectrometry data.
    Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2296-2304.
    by A Heredia-Langner, WR Cannon, KD Jarman, KH Jarman
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:36:44 as **
  • Robust accurate identification of peptides (RAId): deciphering MS2 data using a structured library search with de novo based statistics.
    Bioinformatics, Vol. 21, No. 19. (1 October 2005), pp. 3726-3732.
    by G Alves, YK Yu
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:36:24 as **
  • Identification of post-translational modifications via blind search of mass-spectra.
    Proc IEEE Comput Syst Bioinform Conf (2005), pp. 157-166.
    by D Tsur, S Tanner, E Zandi, V Bafna, PA Pevzner
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:34:19 as **
  • Peptide sequence tag-based blind identification of post-translational modifications with point process model.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by C Liu, B Yan, Y Song, Y Xu, L Cai
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:33:23 as **
  • Fast de novo peptide sequencing and spectral alignment via tree decomposition.
    Pac Symp Biocomput (2006), pp. 255-266.
    by C Liu, Y Song, B Yan, Y Xu, L Cai
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:32:56 as ** along with 1 person mirzazadeh
  • Spectral networks: a new approach to de novo discovery of protein sequences and posttranslational modifications.
    Biotechniques, Vol. 42, No. 6. (June 2007)
    by N Bandeira
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:32:25 as ** along with 1 person jyuh
  • New data base-independent, sequence tag-based scoring of peptide MS/MS data validates Mowse scores, recovers below threshold data, singles out modified peptides, and assesses the quality of MS/MS techniques.
    Mol Cell Proteomics, Vol. 4, No. 8. (August 2005), pp. 1180-1188.
    by MM Savitski, ML Nielsen, RA Zubarev
    posted to denovo-interpretation peptide-identification peptide-spectrum-score proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:29:16 as **
  • Sequence database searches via de novo peptide sequencing by tandem mass spectrometry.
    Rapid Commun Mass Spectrom, Vol. 11, No. 9. (1997), pp. 1067-1075.
    by JA Taylor, RS Johnson
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:26:38 as **
  • High-throughput identification of proteins and unanticipated sequence modifications using a mass-based alignment algorithm for MS/MS de novo sequencing results.
    Anal Chem, Vol. 76, No. 8. (15 April 2004), pp. 2220-2230.
    by BC Searle, S Dasari, M Turner, AP Reddy, D Choi, PA Wilmarth, AL McCormack, LL David, SR Nagalla
    posted to denovo-interpretation peptide-identification proteomics sequence-alignment tandem-mass-spectrometry by nedwards on 2007-08-30 16:26:09 as **
  • De novo peptide sequencing via tandem mass spectrometry.
    J Comput Biol, Vol. 6, No. 3-4. (r 1999), pp. 327-342.
    by V Dancík, TA Addona, KR Clauser, JE Vath, PA Pevzner
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:24:53 as **
  • De novo analysis of peptide tandem mass spectra by spectral graph partitioning.
    J Comput Biol, Vol. 13, No. 2. (March 2006), pp. 364-378.
    by M Bern, D Goldberg
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:24:27 as **
  • A suboptimal algorithm for de novo peptide sequencing via tandem mass spectrometry.
    J Comput Biol, Vol. 10, No. 1. (2003), pp. 1-12.
    by B Lu, T Chen
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:22:07 as **
  • PepNovo: de novo peptide sequencing via probabilistic network modeling.
    Anal Chem, Vol. 77, No. 4. (15 February 2005), pp. 964-973.
    by A Frank, P Pevzner
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:20:54 as **
  • Sequence Database Searches via de Novo Peptide Sequencing by Tandem Mass Spectrometry
    RAPID COMMUNICATIONS IN MASS SPECTROMETRY, Vol. 11 (May 1997), pp. 1067-1075.
    by Alextaylor, Richard S Johnson
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-14 17:29:52 as ** along with 1 person hoangmit
  • Proteomics-grade de novo sequencing approach.
    J Proteome Res, Vol. 4, No. 6. (c 2005), pp. 2348-2354.
    by MM Savitski, ML Nielsen, F Kjeldsen, RA Zubarev
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-09 15:36:44 as **
  • SPIDER: software for protein identification from sequence tags with de novo sequencing error.
    J Bioinform Comput Biol, Vol. 3, No. 3. (June 2005), pp. 697-716.
    by Y Han, B Ma, K Zhang
    posted to denovo-interpretation peptide-identification proteomics proteomics-software tandem-mass-spectrometry by nedwards on 2007-08-09 15:33:42 as **
  • DeNovoID: a web-based tool for identifying peptides from sequence and mass tags deduced from de novo peptide sequencing by mass spectroscopy.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by BD Halligan, V Ruotti, SN Twigger, AS Greene
    posted to denovo-interpretation peptide-identification proteomics proteomics-software tandem-mass-spectrometry by nedwards on 2007-08-09 15:32:37 as **
  • A dynamic programming approach to de novo peptide sequencing via tandem mass spectrometry.
    J Comput Biol, Vol. 8, No. 3. (2001), pp. 325-337.
    by T Chen, MY Kao, M Tepel, J Rush, GM Church
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-09 15:20:02 as ** along with 1 person hoangmit
  • On de novo interpretation of tandem mass spectra for peptide identification
    (2003), pp. 9-18.
    by Vineet Bafna, Nathan Edwards
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-09 15:16:37 as **
  • NovoHMM: A Hidden Markov Model for de Novo Peptide Sequencing
    Anal. Chem., Vol. 77, No. 22. (15 November 2005), pp. 7265-7273.
    by B Fischer, V Roth, F Roos, J Grossmann, S Baginsky, P Widmayer, W Gruissem, JM Buhmann
    posted to denovo-interpretation hidden-markov-models peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-08 15:54:19 as **
  • A graph-theoretic approach for the separation of b and y ions in tandem mass spectra.
    Bioinformatics, Vol. 21, No. 5. (1 March 2005), pp. 563-574.
    by B Yan, C Pan, VN Olman, RL Hettich, Y Xu
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-08 14:01:01 as **
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