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maximilianhs syntenypaper [47 articles]

Senaste hänvisningarna i maximilianhs bibliotek insorterade under taggen syntenypaper. You can also see everyone's syntenypaper.
  • Reconstructing ordinal relationships in the Demospongiae using mitochondrial genomic data.
    Molecular phylogenetics and evolution (16 May 2008)
    by Dennis V V Lavrov, Xiujuan Wang, Michelle Kelly
    posted to geneorder syntenypaper by maximilianh on 2008-06-30 09:08:20 as **
  • OGtree: a tool for creating genome trees of prokaryotes based on overlapping genes.
    Nucleic acids research (2 May 2008)
    by Li-Wei W Jiang, Kuang-Lun L Lin, Chin Lung L Lu
    posted to synteny syntenypaper syntenytools by maximilianh on 2008-05-11 22:20:19 as **
  • Genome classification by gene distribution: an overlapping subspace clustering approach
    BMC Evolutionary Biology, Vol. 8 (23 April 2008), 116.
    by Jason Li, Saman K Halgamuge, Sen-Lin Tang
    posted to geneorder synteny syntenypaper by maximilianh on 2008-04-28 10:28:20 as ** along with 1 person cmzmasek
  • Expected Gene Order Distances and Model Selection in Bacteria.
    Bioinformatics (Oxford, England) (1 April 2008)
    by Daniel Dalevi, Niklas Eriksen
    posted to syntenypaper by maximilianh on 2008-04-06 22:17:08 as ** along with 3 people and 1 group Ema cisevol sharpton BergmanLab
  • PSAT: A web tool to compare genomic neighborhoods of multiple prokaryotic genomes
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Christine Fong, Laurence Rohmer, Matthew Radey, Michael Wasnick, Mitchell Brittnacher
    posted to synteny syntenypaper syntenytools by maximilianh on 2008-03-31 08:44:47 as ** along with 2 people treangen neils
  • Defining a genomic radius for long-range enhancer action: duplicated conserved non-coding elements hold the key
    Trends in Genetics, Vol. 22, No. 1. (January 2006), pp. 5-10.
    by Tanya Vavouri, Gayle K Mcewen, Adam Woolfe, Walter R Gilks, Greg Elgar
    posted to enhancerdistances genomeregulatoryblocks syntenypaper by maximilianh on 2008-03-11 20:55:17 as ** along with 3 people and 1 group sujaikumar cisevol brant cis-regulatory-evolution
  • Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates.
    Genome Res (25 July 2007)
    by Yoichiro Nakatani, Hiroyuki Takeda, Yuji Kohara, Shinichi Morishita
    posted to synteny syntenypaper by maximilianh on 2008-03-11 17:36:56 as ** along with 2 people and 3 groups dchughes grahamc G4ID ParkinsonLab_at_MaRS Genetics-of-Gambling
  • Scanning Human Gene Deserts for Long-Range Enhancers
    Science, Vol. 302, No. 5644. (17 October 2003), 413.
    by Marcelo A Nobrega, Ivan Ovcharenko, Veena Afzal, Edward M Rubin
    posted to long-range syntenypaper by maximilianh on 2008-03-06 10:57:21 as ** along with 4 people djkt elzodw heliopais blobbybirdman
  • Reconstructing the genomic architecture of mammalian ancestors using multispecies comparative maps.
    Hum Genomics, Vol. 1, No. 1. (November 2003), pp. 30-40.
    by WJ Murphy, G Bourque, G Tesler, P Pevzner, SJ O'Brien
    posted to randombreakage synteny syntenypaper by maximilianh on 2008-03-05 14:12:58 as ** along with 1 person balajis
  • Conservation of the MHC-like region throughout evolution.
    Immunogenetics, Vol. 55, No. 3. (June 2003), pp. 141-148.
    by EG Danchin, L Abi-Rached, A Gilles, P Pontarotti
    posted to synteny syntenypaper by maximilianh on 2008-03-05 10:34:18 as **
  • Mapping cis-regulatory domains in the human genome using multi-species conservation of synteny.
    Hum Mol Genet, Vol. 14, No. 20. (15 October 2005), pp. 3057-3063.
    by N Ahituv, S Prabhakar, F Poulin, EM Rubin, O Couronne
    posted to syntenypaper by maximilianh on 2008-03-01 21:13:32 as ** along with 1 person aprasad
  • Ancient origin of the new developmental superfamily DANGER.
    PLoS ONE, Vol. 2, No. 2. (2007)
    by N Nikolaidis, D Chalkia, DN Watkins, RK Barrow, SH Snyder, DB van Rossum, RL Patterson
    posted to syntenypaper by maximilianh on 2008-02-20 18:25:45 as **
  • Junctophilins: a novel family of junctional membrane complex proteins.
    Mol Cell, Vol. 6, No. 1. (July 2000), pp. 11-22.
    by H Takeshima, S Komazaki, M Nishi, M Iino, K Kangawa
    posted to syntenypaper by maximilianh on 2008-02-20 17:24:44 as **
  • The long and arduous road to CRAC.
    Cell Calcium, Vol. 42, No. 2. (August 2007), pp. 157-162.
    by M Vig, JP Kinet
    posted to syntenypaper by maximilianh on 2008-02-20 16:56:36 as **
  • The Ensembl Automatic Gene Annotation System
    Genome Res., Vol. 14, No. 5. (1 May 2004), pp. 942-950.
    by Val Curwen, Eduardo Eyras, Daniel T Andrews, Laura Clarke, Emmanuel Mongin, Steven M Searle, Michele Clamp
    posted to syntenypaper by maximilianh on 2008-02-20 15:46:42 as ** along with 3 people and 1 group indigoviolet incovoma nicholso EisenLab
  • OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by F Chen, AJ Mackey, CJ Stoeckert, DS Roos
    posted to syntenypaper by maximilianh on 2008-02-20 15:41:26 as ** along with 2 people operon ninch
  • OrthoMCL: identification of ortholog groups for eukaryotic genomes.
    Genome Res, Vol. 13, No. 9. (September 2003), pp. 2178-2189.
    by L Li, CJ Stoeckert, DS Roos
    posted to syntenypaper by maximilianh on 2008-02-20 15:41:10 as ** along with 6 people and 1 group mdimmic operon indigoviolet AaronDarling bluto ninch EisenLab
  • Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions
    Genome Res., Vol. 17, No. 11. (1 November 2007), pp. 1603-1613.
    by Laurie Gordon, Shan Yang, Mary Tran-Gyamfi, Dan Baggott, Mari Christensen, Aaron Hamilton, Richard Crooijmans, Martien Groenen, Susan Lucas, Ivan Ovcharenko, Lisa Stubbs
    posted to randombreakage syntenypaper by maximilianh on 2008-01-20 11:35:27 as ** along with 1 person nklee
  • Quantification of insect genome divergence.
    Trends Genet (8 November 2006)
    by Evgeny M M Zdobnov, Peer Bork
    posted to phylogenomics synteny syntenypaper by maximilianh on 2008-01-17 16:59:34 as ** along with 3 people and 1 group nachtalp indigoviolet balicea EisenLab
  • Molecular Phylogeny and Divergence Times of Deuterostome Animals
    Molecular Biology and Evolution, Vol. 22, No. 11. (November 2005), pp. 2275-2284.
    by Jaime E Blair, Blair S Hedges
    posted to phylogeny syntenypaper by maximilianh on 2008-01-17 15:06:57 as ** along with 2 people akifumi pradiptaray
  • Human-zebrafish non-coding conserved elements act in vivo to regulate transcription
    Nucl. Acids Res., Vol. 33, No. 17. (22 September 2005), pp. 5437-5445.
    by Jordan T Shin, James R Priest, Ivan Ovcharenko, Amy Ronco, Rachel K Moore, Geoffrey C Burns, Calum A Macrae
    posted to cns cns-enhancer-screen enhancer syntenypaper by maximilianh on 2008-01-15 19:53:21 as ** along with 1 person djkt
  • Comparison of Pax1/9 Locus Reveals 500-Myr-Old Syntenic Block and Evolutionary Conserved Noncoding Regions
    Molecular Biology and Evolution, Vol. 24, No. 3. (March 2007), pp. 784-791.
    by Wang, Wei, Zhong, Jing, Su, Bing, Zhou, Yan, Wang, Yi-Quan
    posted to genomicregulatoryblocks synteny syntenypaper by maximilianh on 2008-01-15 19:50:49 as ** along with 1 person alhufton
  • Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates
    Genome Res., Vol. 17, No. 5. (1 May 2007), pp. 545-555.
    by Hiroshi Kikuta, Mary Laplante, Pavla Navratilova, Anna Z Komisarczuk, Par G Engstrom, David Fredman, Altuna Akalin, Mario Caccamo, Ian Sealy, Kerstin Howe, Julien Ghislain, Guillaume Pezeron, Philippe Mourrain, Staale Ellingsen, Andrew C Oates, Christine Thisse, Bernard Thisse, Isabelle Foucher, Birgit Adolf, Andrea Geling, Boris Lenhard, Thomas S Becker
    posted to genomicregulatoryblocks randombreakage synteny syntenypaper by maximilianh on 2008-01-15 17:38:19 as ** along with 3 people and 3 groups dchughes djkt boudinot Bioinformatics G4ID Genetics-of-Gambling
  • The evolutionary dynamics of eukaryotic gene order.
    Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 299-310.
    by LD Hurst, C Pál, MJ Lercher
    posted to geneorder synteny syntenypaper by maximilianh on 2008-01-15 14:33:23 as ** along with 5 people operon timflutre olympos jpoyatos ArtemPankin
  • Inversions and the dynamics of eukaryotic gene order.
    Trends Genet, Vol. 17, No. 6. (June 2001), pp. 304-306.
    by MA Huynen, B Snel, P Bork
    posted to geneorder synteny syntenyorientation syntenypaper by maximilianh on 2008-01-15 11:20:12 as **
  • Chromosome rearrangements in evolution: From gene order to genome sequence and back.
    Proc Natl Acad Sci U S A, Vol. 100, No. 20. (30 September 2003), pp. 11188-11189.
    by D Sankoff, JH Nadeau
    posted to synteny syntenypaper by maximilianh on 2008-01-15 10:38:05 as ** along with 2 people and 1 group operon Auger Dead 60's
  • Evidence for co-evolution of gene order and recombination rate.
    Nat Genet, Vol. 33, No. 3. (March 2003), pp. 392-395.
    by C Pál, LD Hurst
    posted to randombreakage synteny syntenypaper by maximilianh on 2008-01-14 23:29:52 as ** along with 2 people lesander jpoyatos
  • Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages.
    Genome Res, Vol. 15, No. 1. (January 2005), pp. 98-110.
    by G Bourque, EM Zdobnov, P Bork, PA Pevzner, G Tesler
    posted to phylogenomics syntenypaper by maximilianh on 2008-01-14 23:03:54 as ** along with 1 person Ayest
  • A new fast heuristic for computing the breakpoint phylogeny and experimental phylogenetic analyses of real and synthetic data.
    Proc Int Conf Intell Syst Mol Biol, Vol. 8 (2000), pp. 104-115.
    by ME Cosner, RK Jansen, BM Moret, LA Raubeson, LS Wang, T Warnow, S Wyman
    posted to phylogenomics synteny syntenypaper by maximilianh on 2008-01-14 18:29:27 as **
  • Rearrangement Rate following the Whole-Genome Duplication in Teleosts
    Mol Biol Evol, Vol. 24, No. 3. (1 March 2007), pp. 860-867.
    by Marie Semon, Kenneth H Wolfe
    posted to phylogenomics syntenypaper by maximilianh on 2008-01-14 16:18:29 as ** along with 1 person and 3 groups dchughes Bioinformatics G4ID Genetics-of-Gambling
  • Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages.
    PLoS Genet, Vol. 2, No. 3. (March 2006)
    by G Fischer, EP Rocha, F Brunet, M Vergassola, B Dujon
    posted to phylogenomics syntenypaper by maximilianh on 2008-01-14 16:11:20 as ** along with 2 people nirfriedman jpoyatos
  • Lengths of chromosomal segments conserved since divergence of man and mouse.
    Proc Natl Acad Sci U S A, Vol. 81, No. 3. (February 1984), pp. 814-818.
    by JH Nadeau, BA Taylor
    posted to randombreakage synteny syntenypaper by maximilianh on 2008-01-14 15:55:48 as ** along with 2 people Retchless AaronDarling
  • The Fragile Breakage versus Random Breakage Models of Chromosome Evolution.
    PLoS Comput Biol, Vol. 2, No. 2. (24 February 2006)
    by Qian Peng, Pavel A A Pevzner, Glenn Tesler
    posted to genomeregulatoryblocks randombreakage synteny syntenypaper by maximilianh on 2008-01-14 15:54:13 as ** along with 1 person AaronDarling
  • Toward Automatic Reconstruction of a Highly Resolved Tree of Life
    Science, Vol. 311, No. 5765. (3 March 2006), pp. 1283-1287.
    by Francesca D Ciccarelli, Tobias Doerks, Christian von Mering, Christopher J Creevey, Berend Snel, Peer Bork
    posted to phylogenomics syntenypaper by maximilianh on 2008-01-14 15:00:19 as ** along with 14 people and 5 groups dparks Retchless knaseanka dpollard tny dchughes nirfriedman cmm azazello wenhan cmzmasek lonshy diamantis Ema EisenLab FAB-lab G4ID Genetics-of-Gambling MBLAB
  • Assessment of phylogenomic and orthology approaches for phylogenetic inference
    Bioinformatics, Vol. 23, No. 7. (1 April 2007), pp. 815-824.
    by Dutilh, , Van Noort, , van der Heijden, , Boekhout, , Snel, , Huynen,
    posted to phylogenomics syntenypaper by maximilianh on 2008-01-14 14:36:42 as ** along with 1 person svdate
  • Using genomic data to unravel the root of the placental mammal phylogeny.
    Genome Res, Vol. 17, No. 4. (April 2007), pp. 413-421.
    by WJ Murphy, TH Pringle, TA Crider, MS Springer, W Miller
    posted to phylogenomics phylogeny syntenypaper by maximilianh on 2008-01-14 14:26:28 as ** along with 1 person aprasad
  • Statistical evidence for a more than 800-million-year-old evolutionarily conserved genomic region in our genome.
    J Mol Evol, Vol. 59, No. 5. (November 2004), pp. 587-597.
    by EG Danchin, P Pontarotti
    posted to synteny syntenypaper by maximilianh on 2008-01-14 12:16:51 as **
  • Phylogenomics and the reconstruction of the tree of life
    Nature Reviews Genetics, Vol. 6, No. 5. (01 May 2005), pp. 361-375.
    by Frederic Delsuc, Henner Brinkmann, Herve Philippe
    posted to phylogenomics syntenypaper by maximilianh on 2008-01-14 11:49:07 as ** along with 3 people cmzmasek gjuggler dmc
  • Cis- and Trans-Acting Elements Regulate the Mouse Psmb9 Meiotic Recombination Hotspot.
    PLoS Genet, Vol. 3, No. 6. (22 June 2007)
    by Frédéric Baudat, Bernard de Massy
    posted to geneorder randombreakage synteny syntenypaper by maximilianh on 2007-12-07 09:29:17 as ** along with 1 person and 1 group dpollard EisenLab
  • Retroviral enhancer detection insertions in zebrafish combined with comparative genomics reveal genomic regulatory blocks - a fundamental feature of vertebrate genomes.
    Genome Biol, Vol. 8 Suppl 1 (2007)
    by H Kikuta, D Fredman, S Rinkwitz, B Lenhard, TS Becker
    posted to genomicregulatoryblocks syntenypaper by maximilianh on 2007-12-07 09:26:33 as ** along with 1 person Stew
  • The determinants of gene order conservation in yeasts
    Genome Biology, Vol. 8 (05 November 2007), R233.
    by Juan F Poyatos, Laurence D Hurst
    posted to genometrees synteny syntenypaper by maximilianh on 2007-12-02 21:42:13 as ***** along with 3 people and 1 group stajich cjeans hpaces Berkeley Mycology
  • Inferring genome-scale rearrangement phylogeny and ancestral gene order: A Drosophila case study
    Genome Biology, Vol. 8 (08 November 2007), R236.
    by Arjun Bhutkar, William M Gelbart, Temple F Smith
    posted to genometrees genomicregulatoryblocks phylogenomics synteny syntenypaper by maximilianh on 2007-11-22 18:12:13 as ** along with 5 people and 1 group indigoviolet dpollard balicea hpaces isimpson EisenLab
  • Genomic regulatory blocks underlie extensive microsynteny conservation in insects
    Genome Res. (7 November 2007), gr.6669607.
    by Par G Engstrom, Ho, Oyvind Drivenes, Thomas S Becker, Boris Lenhard
    posted to genomicregulatoryblocks synteny syntenypaper by maximilianh on 2007-11-13 18:20:24 as **
  • On the association between chromosomal rearrangements and genic evolution in humans and chimpanzees
    Genome Biology, Vol. 8, No. 10. (2007)
    by Tomas M Bonet, Jesus S Ruiz, Lluis Armengol, Razi Khaja, Jaume Bertranpetit, Mariano Rocchi, Elodie Gazave, Nuria L Bigas, Arcadi Navarro
    posted to geneorder synteny syntenypaper by maximilianh on 2007-11-04 00:16:54 as ** along with 2 people and 1 group djkt hpaces Bioinformatics
  • The random versus fragile breakage models of chromosome evolution: a matter of resolution.
    Mol Genet Genomics, Vol. 278, No. 5. (November 2007), pp. 487-491.
    by TS Becker, B Lenhard
    posted to geneorder genomicregulatoryblocks synteny syntenypaper by maximilianh on 2007-11-02 18:36:01 as ** along with 2 people Heute boudinot
  • A higher-level MRP supertree of placental mammals
    BMC Evolutionary Biology, Vol. 6 (13 November 2006), 93.
    by Robin MD Beck, Olaf RP Bininda-Emonds, Marcel Cardillo, Fu-Guo R Liu, Andy Purvis
    posted to mammals phylogenomics phylogeny syntenypaper by maximilianh on 2007-10-30 14:58:25 as **
  • Early History of Mammals Is Elucidated with the ENCODE Multiple Species Sequencing Data
    PLoS Genetics, Vol. 3, No. 1. (1 January 2007), e2.
    by Sergey Nikolaev, Juan I Montoya-Burgos, Elliott H Margulies, Nisc C Program, Jacques Rougemont, Bruno Nyffeler, Stylianos E Antonarakis
    posted to cns phylogenomics phylogeny syntenypaper by maximilianh on 2007-10-17 15:46:38 as read along with 2 people aprasad Garamonfok
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