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maximilianhs noalignment [20 articles]

Senaste hänvisningarna i maximilianhs bibliotek insorterade under taggen noalignment. You can also see everyone's noalignment.
  • Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106.
    by Emily E Hare, Brant K Peterson, Venky N Iyer, Rudolf Meier, Michael B Eisen
    posted to notconserved noalignment drosophila cross-species-enhancer composition combination cns-similarity cns-differences by maximilianh on 2008-09-05 10:47:36 as ** along with 7 people and 2 groups Stew emptyhb djkt stajich pradiptaray cisevol caseybrown Berkeley Mycology cis-regulatory-evolution
  • MOPAT: a graph-based method to predict recurrent cis-regulatory modules from known motifs
    Nucl. Acids Res. (7 July 2008), gkn407.
    by Jianfei Hu, Haiyan Hu, Xiaoman Li
    posted to cns-similarity combination motif noalignment scanning by maximilianh on 2008-07-07 17:15:10 as **
  • Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i165-171.
    by Lucas D Ward, Harmen J Bussemaker
    posted to noalignment by maximilianh on 2008-06-27 15:59:14 as ** along with 1 person xili03
  • Combining Statistical Alignment and Phylogenetic Footprinting to Detect Regulatory Elements.
    Bioinformatics (18 March 2008)
    by R Satija, L Pachter, J Hein
    posted to alignment footprinting noalignment by maximilianh on 2008-05-07 15:29:24 as ** along with 5 people druvus eckart_bindewald Stew gjuggler Ema
  • Studying the functional conservation of cis-regulatory modules and their transcriptional output
    BMC Bioinformatics, Vol. 9 (29 April 2008), 220.
    by Denis C Bauer, Timothy L Bailey
    posted to enhancerprediction noalignment notconserved by maximilianh on 2008-05-01 09:16:32 as ** along with 2 people and 1 group cisevol xili03 cis-regulatory-evolution
  • Promoter analysis of MADS-box genes in eudicots through phylogenetic footprinting.
    Molecular biology and evolution, Vol. 23, No. 6. (June 2006), pp. 1293-1303.
    by S De Bodt, G Theissen, Y Van de Peer
    posted to comparison composition noalignment promoter by maximilianh on 2008-04-30 15:54:45 as **
  • Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites
    PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e7.
    by Daniela Raijman, Ron Shamir, Amos Tanay
    posted to conserved cross-species-enhancer evoluation noalignment by maximilianh on 2008-01-17 08:14:34 as ** along with 7 people and 1 group aalibes chad_davis sebastien_vigneau lusk Garamonfok nklee emptyhb BioinfoCIPF
  • Genome-wide Prediction of Mammalian Enhancers Based on Analysis of Transcription-Factor Binding Affinity
    Cell, Vol. 124, No. 1. (13 January 2006), pp. 47-59.
    by Outi Hallikas, Kimmo Palin, Natalia Sinjushina, Reetta Rautiainen, Juha Partanen, Esko Ukkonen, Jussi Taipale
    posted to enhancerprediction noalignment by maximilianh on 2008-01-14 16:04:36 as ** along with 13 people and 5 groups Terkko kaarsinogen tuck brant xwbcn dchughes nickluscombe olympos cabbagezs karfunkel heliopais oelemento emptyhb Bioinformatics EisenLab G4ID EBI-regulation Genetics-of-Gambling
  • Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b
    Genome Res. (10 December 2007), gr.6929408.
    by David M Mcgaughey, Ryan M Vinton, Jimmy Huynh, Amr Al-Saif, Michael A Beer, Andrew S Mccallion
    posted to application cns discovery enhancer noalignment notconserved rennes by maximilianh on 2007-12-13 09:33:28 as ** along with 2 people brant djkt
  • Prediction of synergistic transcription factors by function conservation
    Genome Biology, Vol. 8, No. 12. (2007)
    by Zihua Hu, Boyu Hu, James Collins
    posted to cluster factors noalignment tfsynergy transcription by maximilianh on 2007-12-08 15:12:16 as ** along with 3 people and 1 group cjeans nklee ale cis-regulatory-evolution
  • Fastcompare: a nonalignment approach for genome-scale discovery of DNA and mRNA regulatory elements using network-level conservation.
    Methods Mol Biol, Vol. 395 (2007), pp. 349-366.
    by O Elemento, S Tavazoie
    posted to noalignment by maximilianh on 2007-11-29 14:58:38 as **
  • BLISS 2.0: a web-based tool for predicting conserved regulatory modules in distantly-related orthologous sequences.
    Bioinformatics (27 July 2007)
    by Hailong Meng, Arunava Banerjee, Lei Zhou
    posted to noalignment by maximilianh on 2007-11-27 12:35:05 as ** along with 2 people and 1 group grahamc GustavoLacerda ParkinsonLab_at_MaRS
  • Transcriptional Regulation of Pituitary POMC Is Conserved at the Vertebrate Extremes Despite Great Promoter Sequence Divergence
    Mol Endocrinol, Vol. 21, No. 11. (1 November 2007), pp. 2738-2749.
    by Viviana F Bumaschny, Flavio S de Souza, Lopez, Andrea M Santangelo, Manfred Baetscher, Diego H Levi, Malcolm J Low, Marcelo Rubinstein
    posted to cross-species-enhancer enhancer noalignment pituitary by maximilianh on 2007-10-27 12:07:13 as * along with 1 person and 1 group cisevol cis-regulatory-evolution
  • Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2738-2750.
    by YH Grad, FP Roth, MS Halfon, GM Church
    posted to noalignment by maximilianh on 2007-10-23 17:39:34 as ** along with 1 person and 1 group indigoviolet EisenLab
  • Discovering transcriptional regulatory regions in Drosophila by a nonalignment method for phylogenetic footprinting.
    Proc Natl Acad Sci U S A (29 March 2007)
    by Alona Sosinsky, Barry Honig, Richard S S Mann, Andrea Califano
    posted to noalignment by maximilianh on 2007-10-23 17:39:16 as ** along with 4 people and 2 groups dpollard Stew cisevol isimpson EisenLab cis-regulatory-evolution
  • A statistical method for alignment-free comparison of regulatory sequences
    Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i249-255.
    by Miriam R Kantorovitz, Gene E Robinson, Saurabh Sinha
    posted to cns-differences cns-similarity noalignment by maximilianh on 2007-09-25 15:13:07 as ** along with 1 person and 1 group cisevol cis-regulatory-evolution
  • Discovering transcriptional regulatory regions in Drosophila by a nonalignment method for phylogenetic footprinting.
    Proc Natl Acad Sci U S A (Mar 2007)
    by Alona Sosinsky, Barry Honig, Richard Mann, Andrea Califano
    posted to noalignment fromconnotea by maximilianh on 2007-09-23 12:59:11 as **
  • Inference of transcriptional regulation using gene expression data from the bovine and human genomes.
    BMC Genomics, Vol. 8 (Aug 2007), pp. 265-265.
    by Amonida Zadissa, John Mcewan, Chris Brown
    posted to noalignment fromconnotea by maximilianh on 2007-09-23 12:59:02 as **
  • Identification of plant promoter constituents by analysis of local distribution of short sequences.
    BMC genomics, Vol. 8 (xx 2007), pp. 67-67.
    by Yoshiharu Yamamoto, Hiroyuki Ichida, Minami Matsui, Junichi Obokata, Tetsuya Sakurai, Masakazu Satou, Motoaki Seki, Kazuo Shinozaki, Tomoko Abe
    posted to noalignment fromconnotea by maximilianh on 2007-09-23 12:59:01 as **
  • A statistical method for alignment-free comparison of regulatory sequences.
    Bioinformatics (Oxford, England), Vol. 23 (Jul 2007), pp. 249-255.
    by Miriam Kantorovitz, Gene Robinson, Saurabh Sinha
    posted to noalignment fromconnotea by maximilianh on 2007-09-23 12:59:01 as **
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