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margaritis' library [208 articles]

Senaste artiklarna i margaritis' bibliotek.
  • Synchronizing genetic relaxation oscillators by intercell signaling.
    Proc Natl Acad Sci U S A, Vol. 99, No. 2. (22 January 2002), pp. 679-684.
    by D McMillen, N Kopell, J Hasty, JJ Collins
    posted to theory quorum_sensing gene-circuits by margaritis on 2008-09-05 12:05:34 as ** along with 1 person rklancer
  • Modeling a synthetic multicellular clock: repressilators coupled by quorum sensing.
    Proc Natl Acad Sci U S A, Vol. 101, No. 30. (27 July 2004), pp. 10955-10960.
    by J Garcia-Ojalvo, MB Elowitz, SH Strogatz
    posted to theory quorum_sensing gene-circuits by margaritis on 2008-09-05 11:59:49 as ** along with 4 people and 1 group rklancer BUiGEM johncumbers mesominimax BUiGEM
  • The stochastic nature of biochemical networks.
    Current opinion in biotechnology (25 July 2008)
    by Vahid Shahrezaei, Peter S S Swain
    posted to stochasticity review noise gene-expression fluctuations by margaritis on 2008-09-04 16:17:00 as ** along with 1 person erel10
  • Noise Reduction by Diffusional Dissipation in a Minimal Quorum Sensing Motif
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000167.
    by Yu Tanouchi, Dennis Tu, Jungsang Kim, Lingchong You
    posted to theory quorum_sensing bacteria by margaritis on 2008-09-03 15:36:25 as ** along with 2 people emptyhb jjray
  • Quorum sensing: cell-to-cell communication in bacteria.
    Annu Rev Cell Dev Biol, Vol. 21 (2005), pp. 319-346.
    by CM Waters, BL Bassler
    posted to review quorum_sensing bacteria by margaritis on 2008-09-03 14:27:23 as ** along with 4 people and 1 group BUiGEM CareyNadell superpyrin dbikard BUiGEM
  • Quorum Sensing in Nitrogen-Fixing Rhizobia
    Microbiol. Mol. Biol. Rev., Vol. 67, No. 4. (1 December 2003), pp. 574-592.
    by Juan E Gonzalez, Melanie M Marketon
    posted to review quorum_sensing bacteria by margaritis on 2008-09-03 14:22:22 as **
  • The Vibrio fischeri LuxR protein is capable of bidirectional stimulation of transcription and both positive and negative regulation of the luxR gene.
    J. Bacteriol., Vol. 173, No. 2. (1 January 1991), pp. 568-574.
    by GS Shadel, TO Baldwin
    posted to vibrio_fischeri by margaritis on 2008-08-28 17:29:01 as **
  • Layers of Signaling in a Bacterium-Host Association
    J. Bacteriol., Vol. 187, No. 11. (1 June 2005), pp. 3603-3606.
    by Karen L Visick
    posted to vibrio_fischeri by margaritis on 2008-08-28 14:09:29 as **
  • Vibrio fischeri Uses Two Quorum-Sensing Systems for the Regulation of Early and Late Colonization Factors
    J. Bacteriol., Vol. 187, No. 11. (1 June 2005), pp. 3620-3629.
    by Claudia Lupp, Edward G Ruby
    posted to vibrio_fischeri by margaritis on 2008-08-28 13:59:23 as **
  • Small Talk: Cell-to-Cell Communication in Bacteria
    Cell, Vol. 109, No. 4. (17 May 2002), pp. 421-424.
    by Bonnie L Bassler
    posted to bacteria quorum_sensing review by margaritis on 2008-08-28 11:57:37 as **
  • Bacterial linguistic communication and social intelligence.
    Trends Microbiol, Vol. 12, No. 8. (August 2004), pp. 366-372.
    by E Ben Jacob, I Becker, Y Shapira, H Levine
    posted to bacteria quorum_sensing review by margaritis on 2008-08-28 11:36:06 as ** along with 2 people and 1 group chrn VRadenovic DSTO-CAS
  • Metabolic gene regulation in a dynamically changing environment
    Nature (30 July 2008)
    by Matthew R Bennett, Wyming L Pang, Natalie A Ostroff, Bridget L Baumgartner, Sujata Nayak, Lev S Tsimring, Jeff Hasty
    posted to experiment gene-circuits gene-expression gene-networks glucose_galactose low_pass_filter yeast by margaritis on 2008-08-28 11:08:38 as ** along with 4 people erel10 caseybrown bayesian klo
  • RNA Polymerase Elongation Factors
    Annual Review of Microbiology, Vol. 62, No. 1. (2008)
    by Jeffrey W Roberts, Smita Shankar, Joshua J Filter
    posted to elongation regulation review transcription by margaritis on 2008-08-26 16:13:40 as **
  • The nonequilibrium mechanism for ultrasensitivity in a biological switch: Sensing by Maxwell's demons
    Proceedings of the National Academy of Sciences
    by Yuhai Tu
    posted to flagela model nonequilibrium theory by margaritis on 2008-08-21 13:31:03 as ** along with 1 person jjray
  • Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis.
    Mol Cell, Vol. 20, No. 3. (11 November 2005), pp. 347-356.
    by AN Kapanidis, E Margeat, TA Laurence, S Doose, SO Ho, J Mukhopadhyay, E Kortkhonjia, V Mekler, RH Ebright, S Weiss
    posted to elongation fret initiation transcritpion by margaritis on 2008-08-19 18:28:57 as ** along with 1 person yusdi
  • Life, logic and information
    Nature, Vol. 454, No. 7203. (24 July 2008), pp. 424-426.
    by Paul Nurse
    posted to commentary by margaritis on 2008-08-19 13:47:47 as ** along with 5 people dullhunk bayesian reyez phoenixzxl fgibson
  • The transcriptional cycle of HIV-1 in real-time and live cells.
    J Cell Biol, Vol. 179, No. 2. (22 October 2007), pp. 291-304.
    by S Boireau, P Maiuri, E Basyuk, M de la Mata, A Knezevich, B Pradet-Balade, V Bäcker, A Kornblihtt, A Marcello, E Bertrand
    posted to elongation experiment pauses transcription by margaritis on 2008-07-10 17:01:41 as ** along with 2 people sebastien_vigneau RedmondSmyth
  • Identification In Vivo of Different Rate-Limiting Steps Associated with Transcriptional Activators in the Presence and Absence of a GAGA Element
    Mol. Cell. Biol., Vol. 25, No. 9. (1 May 2005), pp. 3543-3552.
    by Yunyuan V Wang, Hongbing Tang, David S Gilmour
    posted to initiation pause promoter-proximal transcription by margaritis on 2008-07-03 12:14:14 as **
  • CELL-CELL COMMUNICATION IN GRAM-POSITIVE BACTERIA
    Annual Review of Microbiology, Vol. 51, No. 1. (1997), pp. 527-564.
    by Gary M Dunny, Bettina AB Leonard
    posted to bacteria cell_singalling by margaritis on 2008-06-25 17:23:08 as **
  • Listening in on bacteria: acyl-homoserine lactone signalling
    Nat Rev Mol Cell Biol, Vol. 3, No. 9. (2002), pp. 685-695.
    by Clay Fuqua, Peter E Greenberg
    posted to bacteria cell_singalling by margaritis on 2008-06-25 16:54:49 as **
  • BIOCHEMISTRY: How Enzymes Work
    Science, Vol. 320, No. 5882. (13 June 2008), pp. 1428-1429.
    by Dagmar Ringe, Gregory A Petsko
    posted to active_site catalysis_mechanism enzymes by margaritis on 2008-06-13 12:03:55 as ** along with 4 people balicea reyez dullhunk paulschlesinger
  • Cooperativity and Specificity in Enzyme Kinetics: A Single-Molecule Time-based Perspective
    Biophys. J. (25 April 2008), biophysj.108.131771.
    by Hong Qian
    posted to kinetic_proofreading rate_reactions by margaritis on 2008-06-12 15:59:59 as ** along with 1 person paulschlesinger
  • Stochastic spineless expression creates the retinal mosaic for colour vision
    Nature, Vol. 440, No. 7081., pp. 174-180.
    by Mathias F Wernet, Esteban O Mazzoni, Arzu Ãelik, Dianne M Duncan, Ian Duncan, Claude Desplan
    posted to development gene-expression stochasticity vision by margaritis on 2008-06-10 15:30:40 as **
  • Transient Reversal of RNA Polymerase II Active Site Closing Controls Fidelity of Transcription Elongation
    Molecular Cell, Vol. 30, No. 5. (5 June 2008), pp. 557-566.
    by Maria L Kireeva, Yuri A Nedialkov, Gina H Cremona, Yuri A Purtov, Lucyna Lubkowska, Francisco Malagon, Zachary F Burton, Jeffrey N Strathern, Mikhail Kashlev
    posted to fidelity transcription by margaritis on 2008-06-05 17:49:40 as **
  • Evolvability and hierarchy in rewired bacterial gene networks
    Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845.
    by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia Garriga-Canut, Luis Serrano
    posted to evolvability gene-circuits gene-expression gene-networks regulation transcription by margaritis on 2008-05-09 13:23:46 as ** along with 18 people and 4 groups aalibes tmmurali dullhunk neils cmzmasek AbnerCYH josedavid biehl caseybrown Garamonfok austin hryk dbikard cactus chad_davis michaelbarton aheilbut zwang GEB Centre de Recherches Interdisciplinaires SynBioSys BergmanLab
  • Colored extrinsic fluctuations and stochastic gene expression
    Mol Syst Biol, Vol. 4 (6 May 2008)
    by Vahid Shahrezaei, Julien F Ollivier, Peter S Swain
    posted to extrinsic fluctuations noise stochasticity stochastic_simulations theory by margaritis on 2008-05-07 11:47:21 as ** along with 2 people jjray Ema
  • Transient heterogeneity in extracellular protease production by Bacillus subtilis
    Mol Syst Biol, Vol. 4 (15 April 2008)
    by Jan-Willem Veening, Oleg A Igoshin, Robyn T Eijlander, Reindert Nijland, Leendert W Hamoen, Oscar P Kuipers
    posted to bistability bsubtilis experiment multistability by margaritis on 2008-05-07 11:44:37 as ** along with 2 people balabu brianb
  • Hierarchical structure and the prediction of missing links in networks
    Nature, Vol. 453, No. 7191., pp. 98-101.
    by Aaron Clauset, Cristopher Moore, MEJ Newman
    posted to complexity hierarchical networks by margaritis on 2008-05-06 11:15:32 as ** along with 36 people pbull gtgt15 Ema jago cmor balicea kengg jjray soramame_0518 deanmalmgren briordan hryk tny AbnerCYH cactus tmmurali akshat bryanhughes gagliol jyuh craigwilson06 cmmorel eyliu markusd elsantosneto pinney i-stevenson fbaroni nedwards apwesolowski Borelli ptrobajo dpf rds lfriedl sen_cheng
  • Intrinsic noise, dissipation cost, and robustness of cellular networks: The underlying energy landscape of MAPK signal transduction
    Proceedings of the National Academy of Sciences (17 April 2008), 0708708105.
    by Saul Lapidus, Bo Han, Jin Wang
    posted to noise potential regulatory_network stochasticity by margaritis on 2008-04-25 15:01:52 as ** along with 4 people jjray biehl ddcttrl cactus
  • Incorrect nucleotide insertion at the active site of a G:A mismatch catalyzed by DNA polymerase beta
    Proceedings of the National Academy of Sciences, Vol. 105, No. 15. (15 April 2008), pp. 5670-5674.
    by Ping Lin, Vinod K Batra, Lars C Pedersen, William A Beard, Samuel H Wilson, Lee G Pedersen
    posted to dnap error_rate fidelity by margaritis on 2008-04-16 15:49:44 as **
  • Poised Polymerases: On Your Mark...Get Set...Go!
    Molecular Cell, Vol. 30, No. 1. (11 April 2008), pp. 7-10.
    by David H Price
    posted to elongation regulation review transcription by margaritis on 2008-04-16 15:33:22 as **
  • DNA REPLICATION FIDELITY
    Annual Review of Biochemistry, Vol. 69, No. 1. (2000), pp. 497-529.
    by Thomas A Kunkel, Katarzyna Bebenek
    posted to fidelity proofreading replication by margaritis on 2008-04-14 18:37:53 as **
  • Applied force reveals mechanistic and energetic details of transcription termination.
    Cell, Vol. 132, No. 6. (21 March 2008), pp. 971-982.
    by MH Larson, WJ Greenleaf, R Landick, SM Block
    posted to single-molecule termination transcription by margaritis on 2008-04-14 13:47:45 as ** along with 1 person and 1 group samjlord moernerlab
  • Transcriptional control of noise in gene expression
    Proceedings of the National Academy of Sciences (19 March 2008), 0707904105.
    by Alvaro Sanchez, Jane Kondev
    posted to noise regulation stochasticity theory transcription by margaritis on 2008-04-07 10:58:23 as ** along with 7 people jjray balabu lambda ddcttrl austin sbottani inesdesantiago
  • Stochasticity and Cell Fate
    Science, Vol. 320, No. 5872. (4 April 2008), pp. 65-68.
    by Richard Losick, Claude Desplan
    posted to bistability cell_fate review stochasticity by margaritis on 2008-04-07 10:48:31 as ** along with 4 people and 1 group balabu paulschlesinger davidlott josedavid GEB
  • Transcription Regulation Through Promoter-Proximal Pausing of RNA Polymerase II
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1791-1792.
    by Leighton J Core, John T Lis
    posted to pause pauses regulation transcription by margaritis on 2008-03-28 12:37:15 as ** along with 2 people and 1 group skoch3 biomcgary Koch_Lab
  • Purely stochastic binary decisions in cell signaling models without underlying deterministic bistabilities
    Proceedings of the National Academy of Sciences, Vol. 104, No. 48. (27 November 2007), pp. 18958-18963.
    by Maxim N Artyomov, Jayajit Das, Mehran Kardar, Arup K Chakraborty
    posted to bistability desicion_making noise by margaritis on 2008-03-27 18:28:45 as ** along with 1 person balabu
  • Stochastic switching as a survival strategy in fluctuating environments
    Nat Genet, Vol. 40, No. 4. (April 2008), pp. 471-475.
    by Murat Acar, Jerome T Mettetal, Alexander van Oudenaarden
    posted to bistability noise stochasticity by margaritis on 2008-03-27 17:42:20 as ** along with 10 people and 1 group A_Olympia operon jjray gokhan dbikard bootsy qwermish fjvico osilander brianb GEB
  • Transient-mediated fate determination in a transcriptional circuit of HIV
    Nat Genet, Vol. 40, No. 4. (April 2008), pp. 466-470.
    by Leor S Weinberger, Roy D Dar, Michael L Simpson
    posted to bistability hiv noise by margaritis on 2008-03-27 17:41:48 as ** along with 1 person balabu
  • Stripping Bacillus: ComK auto-stimulation is responsible for the bistable response in competence development
    Molecular Microbiology, Vol. 56, No. 3. (May 2005), pp. 604-614.
    by Wiep K Smits, Caroline C Eschevins, Kim A Susanna, Sierd Bron, Oscar P Kuipers, Leendert W Hamoen
    posted to autoregulation bistability bsubtilis competence by margaritis on 2008-03-25 17:28:50 as **
  • Phenotypic variation in bacteria: the role of feedback regulation
    Nature Reviews Microbiology, Vol. 4, No. 4., pp. 259-271.
    by Wiep K Smits, Oscar P Kuipers, Jan-Willem Veening
    posted to bacteria bistability noise by margaritis on 2008-03-25 17:25:01 as ** along with 4 people and 1 group madhadron nickluscombe comb timflutre EBI-regulation
  • Bistability in the Bacillus subtilis K-state (competence) system requires a positive feedback loop
    Molecular Microbiology, Vol. 56, No. 3. (May 2005), pp. 615-624.
    by Hedia Maamar, David Dubnau
    posted to bistability bsubtilis competence by margaritis on 2008-03-25 17:17:39 as **
  • Bistability and biofilm formation in Bacillus subtilis.
    Mol Microbiol, Vol. 67, No. 2. (20 December 2007), pp. 254-263.
    by Yunrong Chai, Frances Chu, Roberto Kolter, Richard Losick
    posted to biofilm bistability bsubtilis by margaritis on 2008-03-25 16:28:00 as ** along with 1 person madhadron
  • Phosphatases modulate the bistable sporulation gene expression pattern in Bacillus subtilis
    Molecular Microbiology, Vol. 56, No. 6. (June 2005), pp. 1481-1494.
    by Jan-Willem Veening, Leendert W Hamoen, Oscar P Kuipers
    posted to bsubtilis noise sporulation by margaritis on 2008-03-25 16:27:19 as **
  • Bistability in bacteria
    Molecular Microbiology, Vol. 61, No. 3. (August 2006), pp. 564-572.
    by Dubnau, David, Losick, Richard
    posted to bacteria bistability bsubtilis competence by margaritis on 2008-03-25 15:22:50 as *** along with 1 person balabu
  • Basal expression rate of comK sets a switching-window into the K-state of Bacillus subtilis
    Molecular Microbiology, Vol. 63, No. 6. (March 2007), pp. 1806-1816.
    by Leisner, Madeleine, Stingl, Kerstin, Radler, O Joachim, Maier, Berenike
    posted to bsubtilis competence by margaritis on 2008-03-25 14:42:41 as **
  • A chromatin landmark and transcription initiation at most promoters in human cells.
    Cell, Vol. 130, No. 1. (13 July 2007), pp. 77-88.
    by MG Guenther, SS Levine, LA Boyer, R Jaenisch, RA Young
    posted to elongation initiation regulation transcription by margaritis on 2008-03-19 18:20:03 as ** along with 1 person inesdesantiago
  • Nonequilibrium mechanics of active cytoskeletal networks.
    Science, Vol. 315, No. 5810. (19 January 2007), pp. 370-373.
    by D Mizuno, C Tardin, CF Schmidt, FC Mackintosh
    posted to active networks by margaritis on 2008-03-18 14:08:16 as ** along with 1 person shigepong
  • Interchromosomal Interactions and Olfactory Receptor Choice
    Cell, Vol. 126, No. 2. (28 July 2006), pp. 403-413.
    by Stavros Lomvardas, Gilad Barnea, David J Pisapia, Monica Mendelsohn, Jennifer Kirkland, Richard Axel
    posted to desicion_making olfactory_genes by margaritis on 2008-03-18 12:04:28 as ** along with 3 people maximilianh davfre alhufton
  • The nuclear envelope and transcriptional control
    Nature Reviews Genetics, Vol. 8, No. 7. (05 June 2007), pp. 507-517.
    by Asifa Akhtar, Susan M Gasser
    posted to control dna regulation transcription by margaritis on 2008-03-18 11:35:26 as ** along with 2 people and 2 groups dchughes ajgentles G4ID Genetics-of-Gambling
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