SNPTools: a software tool for visualization and analysis of microarray data.

@article{citeulike:1573338, abstract = {SUMMARY: We have created a software tool, SNPTools, for analysis and visualization of microarray data, mainly SNP array data. The software can analyse and find differences in intensity levels between groups of arrays and identify segments of SNPs (genes, clones), where the intensity levels differ significantly between the groups. In addition, SNPTools can show jointly loss-of-heterozygosity (LOH) data (derived from genotypes) and intensity data for paired samples of tumour and normal arrays. The output graphs can be manipulated in various ways to modify and adjust the layout. A wizard allows options and parameters to be changed easily and graphs replotted. All output can be saved in various formats, and also re-opened in SNPTools for further analysis. For explorative use, SNPTools allows various genome information to be loaded onto the graphs. AVAILABILITY: The software, example data sets and tutorials are freely available from http://www.birc.au.dk/snptools}, address = {Bioinformatics Research Center, University of Aarhus, Høegh Guldbergs Gade 10, Aarhus C, Denmark.}, author = {Sørensen, F. J. and Andersen, C. L. and Wiuf, C. }, citeulike-article-id = {1573338}, issn = {1460-2059}, journal = {Bioinformatics}, keywords = {microarray, snp}, month = {June}, number = {12}, pages = {1550--1552}, posted-at = {2007-08-18 05:37:39}, priority = {2}, title = {SNPTools: a software tool for visualization and analysis of microarray data.}, url = {http://view.ncbi.nlm.nih.gov/pubmed/17384422}, volume = {23}, year = {2007} }

TY - JOUR ID - citeulike:1573338 L3 - citeulike-article-id:1573338 TI - SNPTools: a software tool for visualization and analysis of microarray data. JF - Bioinformatics VL - 23 IS - 12 SP - 1550 EP - 1552 AD - Bioinformatics Research Center, University of Aarhus, Høegh Guldbergs Gade 10, Aarhus C, Denmark. SN - 1460-2059 N2 - SUMMARY: We have created a software tool, SNPTools, for analysis and visualization of microarray data, mainly SNP array data. The software can analyse and find differences in intensity levels between groups of arrays and identify segments of SNPs (genes, clones), where the intensity levels differ significantly between the groups. In addition, SNPTools can show jointly loss-of-heterozygosity (LOH) data (derived from genotypes) and intensity data for paired samples of tumour and normal arrays. The output graphs can be manipulated in various ways to modify and adjust the layout. A wizard allows options and parameters to be changed easily and graphs replotted. All output can be saved in various formats, and also re-opened in SNPTools for further analysis. For explorative use, SNPTools allows various genome information to be loaded onto the graphs. AVAILABILITY: The software, example data sets and tutorials are freely available from http://www.birc.au.dk/snptools KW - microarray KW - snp AU - Sørensen, FJ AU - Andersen, CL AU - Wiuf, C PY - 2007/06/15/ UR - http://view.ncbi.nlm.nih.gov/pubmed/17384422 ER -