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jfrs methodology [149 articles]

Senaste hänvisningarna i jfrs bibliotek insorterade under taggen methodology. You can also see everyone's methodology.
  • A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification
    BMC Bioinformatics, Vol. 9 (22 July 2008), 319.
    by Alexander Statnikov, Lily Wang, Constantin F Aliferis
    posted to methodology classification by jfr on 2008-10-01 09:52:03 as ** along with 4 people rmk mdharsee provero chad_davis
  • MicroRNA prediction with a novel ranking algorithm based on random walks
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i50-58.
    by Yunpen Xu, Xuefeng Zhou, Weixiong Zhang
    posted to mirna methodology by jfr on 2008-09-26 11:38:42 as ** along with 1 person and 1 group heliopais microRNA
  • Classification and feature selection algorithms for multi-class CGH data.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)
    by J Liu, S Ranka, T Kahveci
    posted to methodology classification array-cgh by jfr on 2008-09-26 10:53:39 as ** along with 1 person nuin
  • Differential variability analysis of gene expression and its application to human diseases.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)
    by JW Ho, M Stefani, CG dos Remedios, MA Charleston
    posted to microarray_analysis methodology gene_pairs gene_interaction by jfr on 2008-09-26 10:51:27 as *** along with 1 person jyuh
  • Classification of arrayCGH data using fused SVM.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)
    by F Rapaport, E Barillot, JP Vert
    posted to methodology classification array-cgh by jfr on 2008-09-26 10:48:45 as ** along with 1 person nuin
  • Microarray-based classification and clinical predictors: on combined classifiers and additional predictive value.
    Bioinformatics (Oxford, England), Vol. 24, No. 15. (1 August 2008), pp. 1698-1706.
    by AL Boulesteix, C Porzelius, M Daumer
    posted to methodology classification by jfr on 2008-09-22 16:59:44 as *** along with 2 people jyuh GeeSharpMinor
  • Using the information embedded in the testing sample to break the limits caused by the small sample size in microarray-based classification
    BMC Bioinformatics, Vol. 9 (14 June 2008), 280.
    by Manli Zhu, Aleix M Martinez
    posted to methodology classification by jfr on 2008-09-16 18:55:00 as ** along with 1 person ptrobajo
  • Estimation of relevant variables on high-dimensional biological patterns using iterated weighted kernel functions.
    PLoS ONE, Vol. 3, No. 3. (2008)
    by S Rojas-Galeano, E Hsieh, D Agranoff, S Krishna, D Fernandez-Reyes
    posted to methodology classification by jfr on 2008-09-15 12:15:34 as ***
  • Meta-analysis for ranked discovery datasets: theoretical framework and empirical demonstration for microarrays.
    Computational biology and chemistry, Vol. 32, No. 1. (February 2008), pp. 38-46.
    by E Zintzaras, JP Ioannidis
    posted to methodology meta-analysis by jfr on 2008-09-05 11:29:26 as ****
  • Finding disease candidate genes by liquid association
    Genome Biology, Vol. 8 (04 October 2007), R205.
    by Ker-Chau Li, Aarno Palotie, Shinsheng Yuan, Denis Bronnikov, Daniel Chen, Xuelian Wei, Oi-Wa Choi, Janna Saarela, Leena Peltonen
    posted to methodology feature_selection by jfr on 2008-09-04 15:04:54 as ** along with 3 people Terkko rdiaz barriot
  • Experimental validation of miRNA targets
    Methods, Vol. 44, No. 1. (January 2008), pp. 47-54.
    by Donald E Kuhn, Mickey M Martin, David S Feldman, Terry, Gerard J Nuovo, Terry S Elton
    posted to technology review mirna_target methodology by jfr on 2008-09-04 14:13:57 as ** along with 3 people and 1 group jyuh heliopais maralena microRNA
  • Improving prediction accuracy of tumor classification by reusing genes discarded during gene selection.
    BMC genomics, Vol. 9 Suppl 1 (2008)
    by JY Yang, GZ Li, HH Meng, MQ Yang, Y Deng
    posted to methodology feature_selection classification by jfr on 2008-09-04 11:06:49 as ***
  • Integration of Ranked Lists via Cross Entropy Monte Carlo with Applications to mRNA and microRNA Studies.
    Biometrics (12 May 2008)
    by Shili Lin, Jie Ding
    posted to mirna_target methodology gene_lists by jfr on 2008-09-04 10:35:55 as *****
  • Predictive gene lists for breast cancer prognosis: A topographic visualisation study.
    BMC medical genomics, Vol. 1 (2008)
    by M Sivaraksa, D Lowe
    posted to methodology classification breast_cancer by jfr on 2008-09-04 10:24:54 as *** along with 1 person Zephyrus
  • Cancer classification using Rotation Forest.
    Computers in biology and medicine, Vol. 38, No. 5. (May 2008), pp. 601-610.
    by KH Liu, DS Huang
    posted to methodology classification by jfr on 2008-09-04 10:14:50 as *
  • Simple integrative preprocessing preserves what is shared in data sources
    BMC Bioinformatics, Vol. 9 (21 February 2008), 111.
    by Abhishek Tripathi, Arto Klami, Samuel Kaski
    posted to software methodology integration by jfr on 2008-09-03 13:12:34 as read along with 2 people cannin RockHI
  • Sparse kernel methods for high-dimensional survival data.
    Bioinformatics (Oxford, England), Vol. 24, No. 14. (15 July 2008), pp. 1632-1638.
    by L Evers, CM Messow
    posted to classification methodology survival_analysis by jfr on 2008-08-05 14:29:45 as ***
  • A simple and robust method for connecting small-molecule drugs using gene-expression signatures
    BMC Bioinformatics, Vol. 9 (02 June 2008), 258.
    by Shu-Dong Zhang, Timothy W Gant
    posted to methodology small_molecule by jfr on 2008-08-05 14:17:15 as **** along with 1 person jyuh
  • wuHMM: a robust algorithm to detect DNA copy number variation using long oligonucleotide microarray data.
    Nucleic acids research, Vol. 36, No. 7. (April 2008)
    by P Cahan, LE Godfrey, PS Eis, TA Richmond, RR Selzer, M Brent, HL McLeod, TJ Ley, TA Graubert
    posted to array-cgh cnv copy-number methodology by jfr on 2008-06-27 17:08:57 as **
  • Computational Modeling of Post-Transcriptional Gene Regulation by MicroRNAs.
    J Comput Biol (11 March 2008)
    by Raya Khanin, Veronica Vinciotti
    posted to methodology mirna regulation by jfr on 2008-05-05 15:48:09 as ** along with 6 people and 1 group eckart_bindewald maralena jyuh bootsy heliopais pengchy microRNA
  • Ab initio identification of human microRNAs based on structure motifs
    BMC Bioinformatics, Vol. 8 (18 December 2007), 478.
    by Markus Brameier, Carsten Wiuf
    posted to methodology mirna by jfr on 2008-05-05 11:07:56 as ** along with 1 person sventura
  • Analysis of microRNA-target interactions by a target structure based hybridization model.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 64-74.
    by D Long, CY Chan, Y Ding
    posted to methodology mirna_target by jfr on 2008-05-05 10:44:24 as ** along with 2 people and 1 group tharris mtagaya C. elegans / WormBase
  • Comparing sequence and expression for predicting microRNA targets using GenMiR3.
    Pac Symp Biocomput (2008), pp. 52-63.
    by JC Huang, BJ Frey, QD Morris
    posted to methodology mirna_target by jfr on 2008-05-05 10:42:48 as ** along with 1 person and 1 group heliopais microRNA
  • Consensus and Meta-analysis regulatory networks for combining multiple microarray gene expression datasets.
    Journal of biomedical informatics (6 February 2008)
    by Emma Steele, Allan Tucker
    posted to meta-analysis methodology network by jfr on 2008-05-04 22:41:21 as **** along with 1 person AlexanderPico
  • Practical guidelines for assessing power and false discovery rate for a fixed sample size in microarray experiments.
    Stat Med (12 March 2008)
    by Tiejun Tong, Hongyu Zhao
    posted to fdr methodology sample_size by jfr on 2008-05-04 22:25:02 as ** along with 1 person jyuh
  • Indirect genomic effects on survival from gene expression data
    Genome Biology, Vol. 9 (22 March 2008), R58.
    by Egil Ferkingstad, Arnoldo Frigessi, Heidi Lyng
    posted to gene_expression methodology regulation by jfr on 2008-05-04 22:16:56 as ****
  • SPACE: an algorithm to predict and quantify alternatively spliced isoforms using microarrays
    Genome Biology, Vol. 9 (29 February 2008), R46.
    by Miguel A Anton, Dorleta Gorostiaga, Elizabeth Guruceaga, Victor Segura, Pedro Carmona-Saez, Alberto Pascual-Montano, Ruben Pio, Luis M Montuenga, Angel Rubio
    posted to methodology exon_arrays alternative_splicing by jfr on 2008-05-04 22:09:12 as *** along with 5 people and 1 group stajich huali Baten AlexanderPico jyuh Berkeley Mycology
  • Integrating microarray and proteomics data to predict the response on cetuximab in patients with rectal cancer.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 166-177.
    by A Daemen, O Gevaert, T De Bie, A Debucquoy, JP Machiels, B De Moor, K Haustermans
    posted to classification gene_expression integration methodology proteomics by jfr on 2008-04-30 16:51:31 as ** along with 1 person frohike
  • Learning from positive examples when the negative class is undetermined- microRNA gene identification
    Algorithms for Molecular Biology, Vol. 3 (28 January 2008), 2.
    by Malik Yousef, Segun Jung, Louise C Showe, Michael K Showe
    posted to methodology mirna_target by jfr on 2008-04-28 16:23:35 as **** along with 1 person jjheck
  • Response projected clustering for direct association with physiological and clinical response data
    BMC Bioinformatics, Vol. 9 (31 January 2008), 76.
    by Sung-Gon Yi, Taesung Park, Jae K Lee
    posted to clustering methodology by jfr on 2008-04-28 16:22:17 as ** along with 1 person jyuh
  • Decorrelation of the true and estimated classifier errors in high-dimensional settings.
    EURASIP journal on bioinformatics & systems biology (2007)
    by B Hanczar, J Hua, ER Dougherty
    posted to classification evaluation methodology by jfr on 2008-04-23 15:39:43 as **
  • Bayesian models based on test statistics for multiple hypothesis testing problems.
    Bioinformatics (1 February 2008)
    by Yuan Ji, Yiling Lu, Gordon B B Mills
    posted to fdr methodology multiple_testing by jfr on 2008-04-22 08:56:50 as ** along with 8 people jyuh djkt shigepong GeeSharpMinor bertelsen mailund maralena craigwilson06
  • Using repeated measurements to validate hierarchical gene clusters.
    Bioinformatics (19 January 2008)
    by Laurent Bréhélin, Olivier Gascuel, Olivier Martin
    posted to clustering methodology by jfr on 2008-04-22 08:43:13 as ** along with 3 people shigepong dfournier jyuh
  • Reconstruction of genetic association networks from microarray data: A partial least squares approach.
    Bioinformatics (18 January 2008)
    by Vasyl Pihur, Somnath Datta, Susmita Datta
    posted to gene_expression methodology network by jfr on 2008-04-22 08:31:47 as ** along with 6 people jyuh cannin shigepong aconesa sotacam winterschlaefer
  • A non-parametric meta-analysis approach for combining independent microarray datasets: application using two microarray datasets pertaining to chronic allograft nephropathy
    BMC Genomics, Vol. 9 (26 February 2008), 98.
    by Xiangrong Kong, Valeria Mas, Kellie J Archer
    posted to meta-analysis methodology by jfr on 2008-04-22 07:05:03 as ** along with 2 people jyuh kengg
  • A new method for class prediction based on signed-rank algorithms applied to Affymetrix(R) microarray experiments
    BMC Bioinformatics, Vol. 9 (11 January 2008), 16.
    by Thierry Reme, Dirk Hose, John De Vos, Aurelien Vassal, Pierre-Olivier Poulain, Veronique Pantesco, Hartmut Goldschmidt, Bernard Klein
    posted to classification methodology by jfr on 2008-04-18 14:22:25 as **
  • Data Mining in Genomics
    Clinics in Laboratory Medicine, Vol. 28, No. 1. (March 2008), pp. 145-166.
    by Jae K Lee, Paul D Williams, Sooyoung Cheon
    posted to bioinformatics genomics methodology review by jfr on 2008-04-18 13:11:29 as *** along with 2 people jyuh imrchen
  • Integration of statistical inference methods and a novel control measure to improve sensitivity and specificity of data analysis in expression profiling studies.
    J Biomed Inform, Vol. 40, No. 5. (October 2007), pp. 552-560.
    by S Zang, R Guo, L Zhang, Y Lu
    posted to methodology by jfr on 2008-04-16 17:48:31 as ** along with 2 people jyuh renatomilani
  • Consensus analysis of multiple classifiers using non-repetitive variables: Diagnostic application to microarray gene expression data.
    Comput Biol Chem, Vol. 31, No. 1. (February 2007), pp. 48-56.
    by Zhenqiang Su, Huixiao Hong, Roger Perkins, Xueguang Shao, Wensheng Cai, Weida Tong
    posted to classification feature_selection methodology by jfr on 2008-04-16 15:55:25 as ** along with 1 person shigepong
  • Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation
    BMC Bioinformatics, Vol. 8 (18 January 2007), 14.
    by Rob Jelier, Guido Jenster, Lambert CJ Dorssers, Bas J Wouters, Peter JM Hendriksen, Barend Mons, Ruud Delwel, Jan A Kors
    posted to gene_expression integration methodology software text_mining by jfr on 2008-04-14 17:01:10 as ** along with 4 people and 1 group yas hpiwowar fisherp Barend T_lab
  • How large a training set is needed to develop a classifier for microarray data?
    Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 1. (1 January 2008), pp. 108-114.
    by KK Dobbin, Y Zhao, RM Simon
    posted to classification experiment_design methodology statistics by jfr on 2008-04-14 16:46:36 as **** along with 4 people frohike Natowicz jyuh aviad_work
  • Hybrid Huberized Support Vector Machines for Microarray Classification and Gene Selection.
    Bioinformatics (5 January 2008)
    by Li Wang, Ji Zhu, Hui Zou
    posted to classification feature_selection methodology by jfr on 2008-04-14 15:31:27 as * along with 1 person shigepong
  • Allowing for mandatory covariates in boosting estimation of sparse high-dimensional survival models
    BMC Bioinformatics, Vol. 9 (10 January 2008), 14.
    by Harald Binder, Martin Schumacher
    posted to methodology survival_analysis by jfr on 2008-04-14 14:26:06 as * along with 3 people jyuh msierk shigepong
  • Computational analysis of small RNA cloning data
    Methods, Vol. 44, No. 1. (January 2008), pp. 13-21.
    by Philipp Berninger, Dimos Gaidatzis, Erik van Nimwegen, Mihaela Zavolan
    posted to deep_sequencing methodology by jfr on 2008-04-14 10:22:27 as *** along with 2 people jyuh delenca
  • Graph kernels for disease outcome prediction from protein-protein interaction networks.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2007), pp. 4-15.
    by KM Borgwardt, HP Kriegel, SV Vishwanathan, NN Schraudolph
    posted to classification gene_expression integration methodology protein_interaction by jfr on 2008-04-11 17:51:25 as ***
  • Discovery of protein interaction networks shared by diseases.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2007), pp. 76-87.
    by L Sam, Y Liu, J Li, C Friedman, YA Lussier
    posted to methodology protein_interaction by jfr on 2008-04-11 16:43:53 as ***
  • Comparative evaluation of gene-set analysis methods
    BMC Bioinformatics, Vol. 8 (07 November 2007), 431.
    by Qi Liu, Irina Dinu, Adeniyi J Adewale, John D Potter, Yutaka Yasui
    posted to comparison gene_set_analysis methodology by jfr on 2008-04-09 15:04:30 as ** along with 5 people ptrobajo ealloza shigepong idonaldson heliopais
  • Identification of Differentially Expressed Gene Categories in Microarray Studies Using Nonparametric Multivariate Analysis.
    Bioinformatics (27 November 2007)
    by Dan Nettleton, Justin Recknor, James M M Reecy
    posted to feature_selection gene_expression methodology by jfr on 2008-04-09 14:38:28 as ** along with 3 people jyuh shigepong heliopais
  • Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma
    Proceedings of the National Academy of Sciences (6 December 2007), 0710052104.
    by Rameen Beroukhim, Gad Getz, Leia Nghiemphu, Jordi Barretina, Teli Hsueh, David Linhart, Igor Vivanco, Jeffrey C Lee, Julie H Huang, Sethu Alexander, Jinyan Du, Tweeny Kau, Roman K Thomas, Kinjal Shah, Horacio Soto, Sven Perner, John Prensner, Ralph M Debiasi, Francesca Demichelis, Charlie Hatton, Mark A Rubin, Levi A Garraway, Stan F Nelson, Linda Liau, Mischel, Tim F Cloughesy, Matthew Meyerson, Todd A Golub, Eric S Lander, Ingo K Mellinghoff, William R Sellers
    posted to copy-number methodology by jfr on 2008-04-07 12:44:25 as read along with 5 people and 2 groups srp33 oelemento cerami loopback007 chrisamiller Cancer_Stem_Cells Glioma Reviews
  • Breaking the waves: improved detection of copy number variation from microarray-based comparative genomic hybridization
    Genome Biology, Vol. 8 (25 October 2007), R228.
    by John C Marioni, Natalie P Thorne, Armand Valsesia, Tomas Fitzgerald, Richard Redon, Heike Fiegler, Daniel T Andrews, Barbara E Stranger, Andrew G Lynch, Emmanouil T Dermitzakis, Nigel P Carter, Simon Tavare, Matthew E Hurles
    posted to cnv methodology software by jfr on 2008-03-17 16:12:56 as ** along with 3 people rdiaz jlangdon sanchezbuelna
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