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jfrs Xu [23 articles]

Senaste artiklarna i jfrs bibliotek av författaren Xu. Du kan också see andras Xu.
  • Gene Set Expression Comparison kit for BRB-ArrayTools
    Bioinformatics, Vol. 24, No. 1. (1 January 2008), pp. 137-139.
    by Xiaojiang Xu, Yingdong Zhao, Richard Simon
    posted to software gene_set_analysis by jfr on 2008-09-04 14:58:24 as read along with 1 person jyuh
  • An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer.
    BMC genomics, Vol. 9 Suppl 1 (2008)
    by M Xu, MC Kao, J Nunez-Iglesias, JR Nevins, M West, XJ Zhou
    posted to pathway_analysis integration breast_cancer by jfr on 2008-09-04 11:05:25 as *****
  • Merging microarray data from separate breast cancer studies provides a robust prognostic test
    BMC Bioinformatics, Vol. 9 (27 February 2008), 125.
    by Lei Xu, Aik C Tan, Raimond L Winslow, Donald Geman
    posted to meta-analysis classification breast_cancer by jfr on 2008-09-03 13:17:05 as read along with 2 people shigepong chrisamiller
  • A support vector machine approach for detecting gene-gene interaction.
    Genet Epidemiol (29 October 2007)
    by Shyh-Huei H Chen, Jielin Sun, Latchezar Dimitrov, Aubrey R R Turner, Tamara S S Adams, Deborah A A Meyers, Bao-Li L Chang, S Lilly L Zheng, Henrik Grönberg, Jianfeng Xu, Fang-Chi C Hsu
    posted to classification gene_interaction by jfr on 2008-08-05 17:29:08 as ** along with 1 person jyuh
  • Real-time quantification of microRNAs by stem-loop RT-PCR.
    Nucleic Acids Res, Vol. 33, No. 20. (2005)
    by C Chen, DA Ridzon, AJ Broomer, Z Zhou, DH Lee, JT Nguyen, M Barbisin, NL Xu, VR Mahuvakar, MR Andersen, KQ Lao, KJ Livak, KJ Guegler
    posted to mirna rt-pcr microarray_technology by jfr on 2008-06-27 13:26:48 as read along with 3 people and 1 group imouthesmp cdawson robertlsons GIG
  • The methodology used to measure differential gene expression affects the outcome.
    Journal of biomolecular techniques : JBT, Vol. 18, No. 5. (December 2007), pp. 321-330.
    by Y Ding, L Xu, BD Jovanovic, IB Helenowski, DL Kelly, WJ Catalona, XJ Yang, M Pins, RC Bergan
    posted to platform_comparison by jfr on 2008-06-13 15:19:02 as ** along with 1 person jyuh
  • Comprehensive assessment of DNA copy number alterations in human prostate cancers using Affymetrix 100K SNP mapping array.
    Genes, chromosomes & cancer, Vol. 45, No. 11. (November 2006), pp. 1018-1032.
    by W Liu, B Chang, J Sauvageot, L Dimitrov, M Gielzak, T Li, G Yan, J Sun, J Sun, TS Adams, AR Turner, JW Kim, DA Meyers, SL Zheng, WB Isaacs, J Xu
    posted to copy-number snp-arrays by jfr on 2008-06-11 09:02:04 as read
  • Ranking analysis of F-atatistics for microarray data
    BMC Bioinformatics, Vol. 9 (06 March 2008), 142.
    by Yuan-De Tan, Myriam Fornage, Hongyan Xu
    posted to fdr feature_selection gene_expression by jfr on 2008-05-05 11:01:54 as ** along with 2 people jyuh fpattyn
  • Transcriptional recapitulation and subversion of embryonic colon development by mouse colon tumor models and human colon cancer
    Genome Biology, Vol. 8 (05 July 2007), R131.
    by Sergio Kaiser, Young-Kyu Park, Jeffrey L Franklin, Richard B Halberg, Ming Yu, Walter J Jessen, Johannes Freudenberg, Xiaodi Chen, Kevin Haigis, Anil G Jegga, Sue Kong, Bhuvaneswari Sakthivel, Huan Xu, Timothy Reichling, Mohammad Azhar, Gregory P Boivin, Reade B Roberts, Anika Bissahoyo, Fausto Gonzales, Greg L Bloom, Stephen Eschrich, Scott L Carter, Jeremy E Aronow, John Kleimeyer, Michael Kleimeyer, Vivek Ramaswamy, Stephen H Settle, Braden Boone, Shawn Levy, Jonathan M Graff, Thomas Doetschman, Joanna Groden, William F Dove, David W Threadgill, Timothy J Yeatman, Robert J Coffey, Bruce J Aronow
    posted to colon_cancer gene_expression progression by jfr on 2008-05-04 22:05:23 as read along with 2 people slevy03 vmsr
  • Human Proteinpedia enables sharing of human protein data
    Nature Biotechnology, Vol. 26, No. 2., pp. 164-167.
    by Suresh Mathivanan, Mukhtar Ahmed, Natalie G Ahn, Hainard Alexandre, Ramars Amanchy, Philip C Andrews, Joel S Bader, Brian M Balgley, Marcus Bantscheff, Keiryn L Bennett, Erik Björling, Blagoy Blagoev, Ron Bose, Samir K Brahmachari, Alma S Burlingame, Xosé R Bustelo, Gerard Cagney, Greg T Cantin, Helene L Cardasis, Julio E Celis, Raghothama Chaerkady, Feixia Chu, Philip A Cole, Catherine E Costello, Robert J Cotter, David Crockett, James P Delany, Angelo M De Marzo, Leroi V Desouza, Eric W Deutsch, Eric Dransfield, Gerard Drewes, Arnaud Droit, Michael J Dunn, Kojo Elenitoba-Johnson, Rob M Ewing, Jennifer Van Eyk, Vitor Faca, Jayson Falkner, Xiangming Fang, Catherine Fenselau, Daniel Figeys, Pierre Gagné, Cecilia Gelfi, Kris Gevaert, Jeffrey M Gimble, Florian Gnad, Renu Goel, Pavel Gromov, Samir M Hanash, William S Hancock, HC Harsha, Gerald Hart, Faith Hays, Fuchu He, Prashantha Hebbar, Kenny Helsens, Heiko Hermeking, Winston Hide, Karin Hjernø, Denis F Hochstrasser, Oliver Hofmann, David M Horn, Ralph H Hruban, Nieves Ibarrola, Peter James, Ole N Jensen, Pia H Jensen, Peter Jung, Kumaran Kandasamy, Indu Kheterpal, Reiko F Kikuno, Ulrike Korf, Roman Körner, Bernhard Kuster, Min-Seok Kwon, Hyoung-Joo Lee, Young-Jin Lee, Michael Lefevre, Minna Lehvaslaiho, Pierre Lescuyer, Fredrik Levander, Megan S Lim, Christian Löbke, Joseph A Loo, Matthias Mann, Lennart Martens, Juan Martinez-Heredia, Mark Mccomb, James Mcredmond, Alexander Mehrle, Rajasree Menon, Christine A Miller, Harald Mischak, Sujatha S Mohan, Riaz Mohmood, Henrik Molina, Michael F Moran, James D Morgan, Robert Moritz, Martine Morzel, David C Muddiman, Anuradha Nalli, Daniel J Navarro, Thomas A Neubert, Osamu Ohara, Rafael Oliva, Gilbert S Omenn, Masaaki Oyama, Young-Ki Paik, Kyla Pennington, Rainer Pepperkok, Balamurugan Periaswamy, Emanuel F Petricoin, Guy G Poirier, Keshava TS Prasad, Samuel O Purvine, Abdul B Rahiman, Prasanna Ramachandran, YL Ramachandra, Robert H Rice, Jens Rick, Ragna H Ronnholm, Johanna Salonen, Jean-Charles Sanchez, Thierry Sayd, Beerelli Seshi, Kripa Shankari, Shi J Sheng, Vivekananda Shetty, K Shivakumar, Richard J Simpson, Ravi Sirdeshmukh, Michael KW Siu, Jeffrey C Smith, Richard D Smith, David J States, Sumio Sugano, Matthew Sullivan, Giulio Superti-Furga, Maarit Takatalo, Visith Thongboonkerd, Jonathan C Trinidad, Mathias Uhlen, Joël Vandekerckhove, Julian Vasilescu, Timothy D Veenstra, José-Manuel Vidal-Taboada, Mauno Vihinen, Robin Wait, Xiaoyue Wang, Stefan Wiemann, Billy Wu, Tao Xu, John R Yates, Jun Zhong, Ming Zhou, Yunping Zhu, Petra Zurbig, Akhilesh Pandey
    posted to annotation database protein_interaction proteomics resource by jfr on 2008-04-30 16:55:49 as read along with 5 people jyuh tmmurali dullhunk jdiezperezj drbal
  • EzArray: a web-based highly automated Affymetrix expression array data management and analysis system
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Yuerong Zhu, Yuelin Zhu, Wei Xu
    posted to affy database software by jfr on 2008-04-28 15:32:03 as ** along with 4 people jyuh cannin heliopais zhouyu
  • Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
    Genome Res. (7 February 2008), gr.7080508.
    by David S Johnson, Wei Li, Benjamin D Gordon, Arindam Bhattacharjee, Bo Curry, Jayati Ghosh, Leonardo Brizuela, Jason S Carroll, Myles Brown, Paul Flicek, Christopher M Koch, Ian Dunham, Mark Bieda, Xiaoqin Xu, Peggy J Farnham, Philipp Kapranov, David A Nix, Thomas R Gingeras, Xinmin Zhang, Heather Holster, Nan Jiang, Roland Green, Jun S Song, Scott A Mccuine, Elizabeth Anton, Loan Nguyen, Nathan D Trinklein, Zhen Ye, Keith Ching, David Hawkins, Bing Ren, Peter C Scacheri, Joel Rozowsky, Alexander Karpikov, Ghia Euskirchen, Sherman Weissman, Mark Gerstein, Michael Snyder, Annie Yang, Zarmik Moqtaderi, Heather Hirsch, Hennady P Shulha, Yutao Fu, Zhiping Weng, Kevin Struhl, Richard M Myers, Jason D Lieb, Shirley X Liu
    posted to chip-chip evaluation review microarray_technology by jfr on 2008-04-21 09:21:22 as * along with 11 people and 2 groups kengg djkt xiaobeizhao cabbagezs idonaldson caseybrown magusina lp2 stajich gracio gdb BergmanLab Berkeley Mycology
  • Application of cDNA microarrays to generate a molecular taxonomy capable of distinguishing between colon cancer and normal colon.
    Oncogene, Vol. 21, No. 31. (18 July 2002), pp. 4855-4862.
    by TT Zou, FM Selaru, Y Xu, V Shustova, J Yin, Y Mori, D Shibata, F Sato, S Wang, A Olaru, E Deacu, TC Liu, JM Abraham, SJ Meltzer
    posted to colon_cancer gene_expression by jfr on 2008-02-12 16:02:46 as **
  • Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D
    Nucl. Acids Res., Vol. 35, No. 19. (8 October 2007), e128.
    by Fabiana Perocchi, Zhenyu Xu, Sandra Clauder-Munster, Lars M Steinmetz
    posted to antisense genomics by jfr on 2007-12-07 13:38:15 as * along with 4 people raiyar jyuh balicea Eonwe
  • Large-scale integration of cancer microarray data identifies a robust common cancer signature
    BMC Bioinformatics, Vol. 8 (30 July 2007), 275.
    by Lei Xu, Donald Geman, Raimond L Winslow
    posted to classification integration meta-analysis by jfr on 2007-12-04 15:24:37 as **** along with 2 people shigepong srp33
  • Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential
    BMC Bioinformatics, Vol. 6, No. Suppl 2. (2005)
    by Leming Shi, Weida Tong, Hong Fang, Uwe Scherf, Jing Han, Raj Puri, Felix Frueh, Federico Goodsaid, Lei Guo, Zhenqiang Su, Tao Han, James Fuscoe, Alex Z Xu, Tucker Patterson, Huixiao Hong, Qian Xie, Roger Perkins, James Chen, Daniel Casciano
    posted to maqc quality_control by jfr on 2007-11-23 15:36:43 as ** along with 1 person cberry
  • Towards precise classification of cancers based on robust gene functional expression profiles
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Zheng Guo, Tianwen Zhang, Xia Li, Qi Wang, Jianzhen Xu, Hui Yu, Jing Zhu, Haiyun Wang, Chenguang Wang, Eric Topol, Qing Wang, Shaoqi Rao
    posted to gene_set_analysis by jfr on 2007-09-13 11:15:58 as ** along with 3 people maryee eckart_bindewald macavity1g
  • An unsupervised approach to identify molecular phenotypic components influencing breast cancer features.
    Cancer Res, Vol. 64, No. 5. (1 March 2004), pp. 1584-1588.
    by FM Selaru, J Yin, A Olaru, Y Mori, Y Xu, SH Epstein, F Sato, E Deacu, S Wang, A Sterian, A Fulton, JM Abraham, D Shibata, C Baquet, SA Stass, SJ Meltzer
    posted to subtypes class_discovery breast_cancer by jfr on 2007-01-30 10:12:05 as *
  • Generalization of DNA microarray dispersion properties: microarray equivalent of t-distribution
    Biology Direct, Vol. 1 (07 September 2006), 27.
    by Jaroslav P Novak, Seon-Young Kim, Jun Xu, Olga Modlich, David J Volsky, David Honys, Joan L Slonczewski, Douglas A Bell, Fred R Blattner, Eduardo Blumwald, Marjan Boerma, Manuel Cosio, Zoran Gatalica, Marian Hajduch, Juan Hidalgo, Roderick R Mcinnes, Merrill C Miller, Milena Penkowa, Michael S Rolph, Jordan Sottosanto, Rene St-Arnaud, Michael J Szego, David Twell, Charles Wang
    posted to microarray_technology evaluation by jfr on 2007-01-10 14:34:33 as **
  • Effects of replacing the unreliable cDNA microarray measurements on the disease classification based on gene expression profiles and functional modules.
    Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2883-2889.
    by D Wang, Y Lv, Z Guo, X Li, Y Li, J Zhu, D Yang, J Xu, C Wang, S Rao, B Yang
    posted to missing_values bioinformatics by jfr on 2007-01-09 18:08:07 as ** along with 1 person shigepong
  • Robust prostate cancer marker genes emerge from direct integration of inter-study microarray data.
    Bioinformatics, Vol. 21, No. 20. (15 October 2005), pp. 3905-3911.
    by L Xu, AC Tan, DQ Naiman, D Geman, RL Winslow
    posted to classification markers meta-analysis by jfr on 2006-12-15 16:45:05 as ** along with 1 person holmesjo
  • Rat toxicogenomic study reveals analytical consistency across microarray platforms
    Nature Biotechnology, Vol. 24, No. 9. (08 September 2006), pp. 1162-1169.
    by Lei Guo, Edward K Lobenhofer, Charles Wang, Richard Shippy, Stephen C Harris, Lu Zhang, Nan Mei, Tao Chen, Damir Herman, Federico M Goodsaid, Patrick Hurban, Kenneth L Phillips, Jun Xu, Xutao Deng, Yongming A Sun, Weida Tong, Yvonne P Dragan, Leming Shi
    posted to microarray_technology by jfr on 2006-11-07 14:01:23 as ** along with 3 people jdiggans cberry giovenko
  • In silico discovery of human natural antisense transcripts.
    BMC Bioinformatics, Vol. 7 (2006)
    by YY Li, L Qin, ZM Guo, L Liu, H Xu, P Hao, J Su, Y Shi, WZ He, YX Li
    posted to antisense by jfr on 2006-11-06 14:59:55 as **
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