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idonaldsons cis-regulation [22 articles]

Senaste hänvisningarna i idonaldsons bibliotek insorterade under taggen cis-regulation. You can also see everyone's cis-regulation.
  • Cross-species de novo identification of cis-regulatory modules with GibbsModule: application to gene regulation in embryonic stem cells
    Genome Res. (15 May 2008), gr.072769.107.
    by Dan Xie, Jun Cai, Na-Yu Chia, Huck Ng, Sheng Zhong
    posted to cis-regulation crm motif-discovery tool by idonaldson on 2008-05-27 09:53:11 as *** along with 5 people ihpark isimpson GustavoLacerda phoenixzxl yoonk
  • Detecting cis-regulatory binding sites for cooperatively binding proteins
    Nucl. Acids Res., Vol. 36, No. 8. (1 May 2008), e46.
    by Liesbeth van Oeffelen, Pierre Cornelis, Wouter Van Delm, Fedor De Ridder, Bart De Moor, Yves Moreau
    posted to cis-regulation co combinatorial motif by idonaldson on 2008-05-07 09:59:14 as ** along with 3 people tmmurali maximilianh isimpson
  • Ancora: a web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes
    Genome Biology, Vol. 9 (15 February 2008), R34.
    by Par G Engstrom, David Fredman, Boris Lenhard
    posted to cis-regulation conserved tool by idonaldson on 2008-02-25 10:25:05 as *** along with 5 people brant natstreet heliopais boudinot isimpson
  • Systematic functional characterization of cis-regulatory motifs in human core promoters
    Genome Res. (6 February 2008), gr.6828808.
    by Saurabh Sinha, Adam S Adler, Yair Field, Howard Y Chang, Eran Segal
    posted to cis-regulation motif promoter by idonaldson on 2008-02-20 08:58:19 as *** along with 7 people and 1 group ealloza lp2 cabbagezs emptyhb ihpark gracio isimpson Jarman Lab
  • A Profile-Based Deterministic Sequential Monte Carlo Algorithm for Motif Discovery.
    Bioinformatics (17 November 2007)
    by Kuo-Ching C Liang, Xiaodong Wang, Dimitris Anastassiou
    posted to cis-regulation tfbs tool by idonaldson on 2007-11-27 14:46:52 as ** along with 5 people and 1 group grahamc cjeans nklee maximilianh isimpson Motif Discovery
  • OSCAR: One-class SVM for Accurate Recognition of Cis-elements
    Bioinformatics (5 October 2007), btm473.
    by Bo Jiang, Michael Q Zhang, Xuegong Zhang
    posted to cis-regulation tfbs tool by idonaldson on 2007-11-27 14:42:52 as *** along with 6 people and 1 group cassj tmmurali chad_davis cabbagezs maximilianh isimpson csb_journal_club_public
  • MotifCombinator: a web-based tool to search for combinations of cis-regulatory motifs
    BMC Bioinformatics, Vol. 8 (22 March 2007), 100.
    by Mamoru Kato, Tatsuhiko Tsunoda
    posted to cis-regulation crm tool by idonaldson on 2007-11-06 09:15:33 as **** along with 3 people and 1 group cwbrown nklee isimpson EisenLab
  • Gata2, Fli1, and Scl form a recursively wired gene-regulatory circuit during early hematopoietic development.
    Proc Natl Acad Sci U S A (25 October 2007)
    by John E E Pimanda, Katrin Ottersbach, Kathy Knezevic, Sarah Kinston, Wan Y I Y Chan, Nicola K K Wilson, Josette-Renée R Landry, Andrew D D Wood, Anja Kolb-Kokocinski, Anthony R R Green, David Tannahill, Georges Lacaud, Valerie Kouskoff, Berthold Göttgens
    posted to cis-regulation crm gottgens haematopoiesis networks tfbs by idonaldson on 2007-10-29 10:30:29 as *** along with 2 people jjray maximilianh
  • IEM: An Algorithm for Iterative Enhancement of Motifs Using Comparative Genomics Data.
    Comput Syst Bioinformatics Conf, Vol. 6 (2007), pp. 227-235.
    by E Zeng, K Mathee, G Narasimhan
    posted to cis-regulation conserved tfbs tool by idonaldson on 2007-10-29 10:04:48 as *** along with 3 people maximilianh annacarina07 isimpson
  • How does DNA sequence motif discovery work?
    Nature Biotechnology, Vol. 24, No. 8., pp. 959-961.
    by Patrik D'Haeseleer
    posted to cis-regulation motif-discovery primer tfbs by idonaldson on 2007-10-26 14:26:18 as *** along with 7 people and 1 group bryankr okarsligil Evangelia antonkratz xi03 isimpson chad_davis Bioinformatics
  • The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells
    Nature Genetics, Vol. 38, No. 4. (05 March 2006), pp. 431-440.
    by Yuin-Han Loh, Qiang Wu, Joon-Lin Chew, Vinsensius B Vega, Weiwei Zhang, Xi Chen, Guillaume Bourque, Joshy George, Bernard Leong, Jun Liu, Kee-Yew Wong, Ken W Sung, Charlie WH Lee, Xiao-Dong Zhao, Kuo-Ping Chiu, Leonard Lipovich, Vladimir A Kuznetsov, Paul Robson, Lawrence W Stanton, Chia-Lin Wei, Yijun Ruan, Bing Lim, Huck-Hui Ng
    posted to tfbs cis-regulation mouse networks stem-cells by idonaldson on 2007-10-24 10:11:38 as *** along with 9 people jyuh cmmorel gpalidwor brixtonmc vega eukfn mikaelhuss tdmckee MllePapillon
  • Identifying tissue-selective transcription factor binding sites in vertebrate promoters.
    Proc Natl Acad Sci U S A, Vol. 102, No. 5. (1 February 2005), pp. 1560-1565.
    by AD Smith, P Sumazin, MQ Zhang
    posted to cis-regulation promoter tfbs tool by idonaldson on 2007-10-24 09:14:11 as read along with 1 person heliopais
  • MyoD uses overlapping but distinct elements to bind E-box and tetraplex structures of regulatory sequences of muscle-specific genes.
    Nucleic Acids Res (16 October 2007)
    by Jeny Shklover, Shulamit Etzioni, Pnina Weisman-Shomer, Anat Yafe, Eyal Bengal, Michael Fry
    posted to cis-regulation ebox muscle myod tfbs by idonaldson on 2007-10-22 09:23:27 as *** along with 1 person and 1 group jmrivort G-quadruplex
  • Statistical power of phylo-HMM for evolutionarily conserved element detection
    BMC Bioinformatics, Vol. 8 (05 October 2007), 374.
    by Xiaodan Fan, Jun Zhu, Eric E Schadt, Jun S Liu
    posted to cis-regulation conserved hmm by idonaldson on 2007-10-19 13:13:19 as *** along with 2 people and 1 group pradiptaray isimpson BergmanLab
  • Analysis of multiple genomic sequence alignments: a web resource, online tools, and lessons learned from analysis of mammalian SCL loci.
    Genome Res, Vol. 14, No. 2. (February 2004), pp. 313-318.
    by MA Chapman, IJ Donaldson, J Gilbert, D Grafham, J Rogers, AR Green, B Göttgens
    posted to alignment cis-regulation me tfbs tool by idonaldson on 2007-10-19 12:58:15 as read
  • Genome-wide analysis of repressor element 1 silencing transcription factor/neuron-restrictive silencing factor (REST/NRSF) target genes.
    Proc Natl Acad Sci U S A, Vol. 101, No. 28. (13 July 2004), pp. 10458-10463.
    by AW Bruce, IJ Donaldson, IC Wood, SA Yerbury, MI Sadowski, M Chapman, B Göttgens, NJ Buckley
    posted to cis-regulation me tfbs tool by idonaldson on 2007-10-19 12:54:15 as read
  • TFBScluster web server for the identification of mammalian composite regulatory elements.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by IJ Donaldson, B Göttgens
    posted to cis-regulation crm me tfbs tool by idonaldson on 2007-10-19 12:51:59 as read
  • TFBScluster: a resource for the characterization of transcriptional regulatory networks.
    Bioinformatics, Vol. 21, No. 13. (1 July 2005), pp. 3058-3059.
    by IJ Donaldson, M Chapman, B Göttgens
    posted to cis-regulation crm me tfbs tool by idonaldson on 2007-10-19 12:48:27 as read along with 1 person dquest
  • Genome-wide identification of cis-regulatory sequences controlling blood and endothelial development.
    Hum Mol Genet, Vol. 14, No. 5. (1 March 2005), pp. 595-601.
    by IJ Donaldson, M Chapman, S Kinston, JR Landry, K Knezevic, S Piltz, N Buckley, AR Green, B Göttgens
    posted to cis-regulation me tfbs transgenic by idonaldson on 2007-10-19 12:45:13 as read
  • Identification of the REST regulon reveals extensive transposable element-mediated binding site duplication.
    Nucleic Acids Res, Vol. 34, No. 14. (2006), pp. 3862-3877.
    by R Johnson, RJ Gamblin, L Ooi, AW Bruce, IJ Donaldson, DR Westhead, IC Wood, RM Jackson, NJ Buckley
    posted to cis-regulation matrix re1 te by idonaldson on 2007-10-18 17:08:41 as read along with 2 people and 2 groups cisevol RaquelSL cis-regulatory-evolution BergmanLab
  • CoMoDis: composite motif discovery in mammalian genomes.
    Nucleic Acids Res, Vol. 35, No. 1. (2007)
    by IJ Donaldson, B Göttgens
    posted to cis-regulation me motif-discovery tfbs tool by idonaldson on 2007-10-18 16:41:50 as read along with 1 person and 1 group csdhwang Bioinformatics
  • Evolution of candidate transcriptional regulatory motifs since the human-chimpanzee divergence
    Genome Biology, Vol. 7 (29 June 2006), R52.
    by Ian J Donaldson, Berthold Göttgens
    posted to chimp cis-regulation evolution human me tfbs by idonaldson on 2007-10-18 15:58:36 as read along with 4 people and 2 groups indigoviolet ranb djkt cisevol EisenLab cis-regulatory-evolution
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