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hryks library [77 articles]

Senaste artiklarna i hryks bibliotek.
  • Quantifying robustness of biochemical network models
    BMC Bioinformatics, Vol. 3, No. 1. (2002)
    by Lan Ma, Pablo Iglesias
    posted to robustness network by hryk on 2008-06-30 21:38:33 as **
  • Protein complex prediction via cost-based clustering
    Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 3013-3020.
    by AD King, N Przulj, I Jurisica
    posted to prediction ppi cluster by hryk on 2008-06-30 21:36:17 as ** along with 2 people and 1 group lfriedl maralena kdl
  • Investigating metabolite essentiality through genome-scale analysis of Escherichia coli production capabilities.
    Bioinformatics (Oxford, England), Vol. 21, No. 9. (1 May 2005), pp. 2008-2016.
    by M Imieliński, C Belta, A Halász, H Rubin
    posted to essential ecoli by hryk on 2008-06-30 21:33:47 as **
  • metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella
    Nucleic Acids Research, Vol. 33, No. 4., pp. 1399-1409.
    by W Pinney, W Shirley, A Mcconkey, R Westhead
    posted to tool software prediction network by hryk on 2008-06-30 21:33:22 as ** along with 4 people and 2 groups jmeppley eweaver bsmagic shung Bioinformatics bioinplant
  • Squid - a simple bioinformatics grid.
    BMC Bioinformatics, Vol. 6 (2005)
    by PC Carvalho, RV Glória, AB de Miranda, WM Degrave
    posted to grid bioinformatics by hryk on 2008-06-30 21:32:21 as ** along with 4 people tharris eweaver moborg fisherp
  • A methodology for the structural and functional analysis of signaling and regulatory networks.
    BMC Bioinformatics, Vol. 7, No. 1. (7 February 2006)
    by Steffen Klamt, Julio Saez-Rodriguez, Jonathan A Lindquist, Luca Simeoni, Ernst D Gilles
    posted to signaling network method analysis by hryk on 2008-06-30 21:29:51 as *** along with 3 people and 1 group maralena gokhan cdppublications CDP
  • A node pruning algorithm based on a Fourier amplitude sensitivity test method.
    IEEE transactions on neural networks / a publication of the IEEE Neural Networks Council, Vol. 17, No. 2. (March 2006), pp. 273-293.
    by P Lauret, E Fock, TA Mara
    posted to network graph algorithm by hryk on 2008-06-30 21:27:12 as **
  • An algorithm for modularity analysis of directed and weighted biological networks based on edge-betweenness centrality.
    Bioinformatics (Oxford, England), Vol. 22, No. 24. (15 December 2006), pp. 3106-3108.
    by J Yoon, A Blumer, K Lee
    posted to network graph cluster algorithm by hryk on 2008-06-30 21:25:55 as ** along with 1 person AbnerCYH
  • Cluster conservation as a novel tool for studying protein-protein interactions evolution
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Ofer Rahat, Assif Yitzhaky, Gideon Schreiber
    posted to ppi network evolution cluster by hryk on 2008-06-30 21:22:40 as ** along with 2 people marti cjeans
  • Interactive three-dimensional visualization and contextual analysis of protein interaction networks.
    Journal of proteome research, Vol. 7, No. 1. (January 2008), pp. 104-112.
    by E Ho, R Webber, MR Wilkins
    posted to tool software network 3d by hryk on 2008-06-30 21:22:08 as **
  • METANNOGEN: compiling features of biochemical reactions needed for the reconstruction of metabolic networks.
    BMC systems biology, Vol. 1 (2007)
    by C Gille, S Hoffmann, HG Holzhütter
    posted to pathway metabolic by hryk on 2008-06-30 20:54:14 as **
  • Metabolic network visualization eliminating node redundance and preserving metabolic pathways.
    BMC systems biology, Vol. 1 (2007)
    by R Bourqui, L Cottret, V Lacroix, D Auber, P Mary, MF Sagot, F Jourdan
    posted to visualize pathway network metabolic by hryk on 2008-06-30 20:51:59 as ****
  • The topology of metabolic isotope labeling networks
    BMC Bioinformatics, Vol. 8 (29 August 2007), 315.
    by Michael Weitzel, Wolfgang Wiechert, Katharina Noh
    posted to topology pathway network metabolic by hryk on 2008-06-30 20:48:02 as ***
  • Carbon-fate maps for metabolic reactions.
    Bioinformatics (Oxford, England), Vol. 23, No. 23. (1 December 2007), pp. 3193-3199.
    by F Mu, RF Williams, CJ Unkefer, PJ Unkefer, JR Faeder, WS Hlavacek
    posted to pathway network metabolic by hryk on 2008-06-30 20:46:29 as ****
  • Exploring genetic interactions and networks with yeast
    Nature Reviews Genetics, Vol. 8, No. 6., pp. 437-449.
    by Charles Boone, Howard Bussey, Brenda J Andrews
    posted to network genetic_interaction essential by hryk on 2008-06-30 20:29:28 as ***** along with 4 people marck jyuh balajis zwang
  • Tools for Visually Exploring Biological Networks.
    Bioinformatics (25 August 2007)
    by Matthew Suderman, Michael Hallett
    posted to tool software network by hryk on 2008-06-30 20:18:15 as ** along with 12 people and 3 groups AlexanderPico schuylrp jyuh icases dullhunk sebastien_vigneau grahamc sgoetz cabbagezs cerami loopback007 Pao-Yang ParkinsonLab_at_MaRS TNT Cancer_Stem_Cells
  • Reconstructing networks of pathways via significance analysis of their intersections.
    BMC bioinformatics, Vol. 9 Suppl 4 (2008)
    by M Francesconi, D Remondini, N Neretti, JM Sedivy, LN Cooper, E Verondini, L Milanesi, G Castellani
    posted to pathway network by hryk on 2008-06-30 20:13:58 as ** along with 2 people jyuh maralena
  • Mapping the Gnutella network
    Internet Computing, IEEE, Vol. 6, No. 1. (2002), pp. 50-57.
    by R Matei, A Iamnitchi, P Foster
    posted to network gnutella by hryk on 2008-06-17 10:29:36 as ** along with 2 people matteodellamico muraken
  • An Empirical Analysis of Network Externalities in Peer-To-Peer Music Sharing Networks
    Social Science Research Network Working Paper Series (September 2003)
    by ATIP Asvanund, CLAY Karen, Ramayya Krishnan, Michael D Smith
    posted to no-tag by hryk on 2008-06-17 10:23:55 as ****
  • Bio2RDF: Towards a mashup to build bioinformatics knowledge systems.
    Journal of biomedical informatics (21 March 2008)
    by François Belleau, Marc-Alexandre A Nolin, Nicole Tourigny, Philippe Rigault, Jean Morissette
    posted to tool mashup by hryk on 2008-06-06 12:24:55 as ** along with 3 people tharris jyuh dullhunk
  • Imaging the biogenesis of individual HIV-1 virions in live cells
    Nature (25 May 2008)
    by Nolwenn Jouvenet, Paul D Bieniasz, Sanford M Simon
    posted to virus imaging hiv by hryk on 2008-05-28 14:54:41 as ** along with 3 people xingxu kieran101 lechristophe
  • Reconstruction and Structural Analysis of Metabolic and Regulatory Networks
    Introduction to Systems Biology (2007), pp. 124-146.
    by Hong-Wu Ma, Marcio R Silva, Ji-Bin Sun, Bharani Kumar, An-Ping Zeng
    posted to regulatory network metabolic by hryk on 2008-05-26 01:29:13 as ****
  • The Importance of Bottlenecks in Protein Networks: Correlation with Gene Essentiality and Expression Dynamics
    PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e59.
    by Haiyuan Yu, Philip M Kim, Emmett Sprecher, Valery Trifonov, Mark Gerstein
    posted to topology ppi network betweeness by hryk on 2008-05-13 08:55:50 as **** along with 4 people Takayuki carlk jfr zwang
  • Functional essentiality from topology features in metabolic networks: a case study in yeast.
    FEBS letters, Vol. 579, No. 21. (29 August 2005), pp. 4642-4646.
    by MC Palumbo, A Colosimo, A Giuliani, L Farina
    posted to yeast topology network metabolic essential by hryk on 2008-05-13 07:30:08 as ****
  • Multiple knockout analysis of genetic robustness in the yeast metabolic network
    Nature Genetics, Vol. 38, No. 9. (29 August 2006), pp. 993-998.
    by David Deutscher, Isaac Meilijson, Martin Kupiec, Eytan Ruppin
    posted to yeast multiple-knockout essential by hryk on 2008-05-13 07:25:43 as ** along with 6 people and 1 group tmmurali koller raiyar cjeans patrycja_missiuro edwardmorrissey steinmetzlab
  • Essentiality is an emergent property of metabolic network wiring.
    FEBS letters, Vol. 581, No. 13. (29 May 2007), pp. 2485-2489.
    by MC Palumbo, A Colosimo, A Giuliani, L Farina
    posted to network metabolic essential by hryk on 2008-05-13 07:21:06 as **
  • Essential Bacillus subtilis genes.
    Proc Natl Acad Sci U S A, Vol. 100, No. 8. (15 April 2003), pp. 4678-4683.
    by K Kobayashi, SD Ehrlich, A Albertini, G Amati, KK Andersen, M Arnaud, K Asai, S Ashikaga, S Aymerich, P Bessieres, F Boland, SC Brignell, S Bron, K Bunai, J Chapuis, LC Christiansen, A Danchin, M Débarbouille, E Dervyn, E Deuerling, K Devine, SK Devine, O Dreesen, J Errington, S Fillinger, SJ Foster, Y Fujita, A Galizzi, R Gardan, C Eschevins, T Fukushima, K Haga, CR Harwood, M Hecker, D Hosoya, MF Hullo, H Kakeshita, D Karamata, Y Kasahara, F Kawamura, K Koga, P Koski, R Kuwana, D Imamura, M Ishimaru, S Ishikawa, I Ishio, D Le Coq, A Masson, C Mauël, R Meima, RP Mellado, A Moir, S Moriya, E Nagakawa, H Nanamiya, S Nakai, P Nygaard, M Ogura, T Ohanan, M O'Reilly, M O'Rourke, Z Pragai, HM Pooley, G Rapoport, JP Rawlins, LA Rivas, C Rivolta, A Sadaie, Y Sadaie, M Sarvas, T Sato, HH Saxild, E Scanlan, W Schumann, JF Seegers, J Sekiguchi, A Sekowska, SJ Séror, M Simon, P Stragier, R Studer, H Takamatsu, T Tanaka, M Takeuchi, HB Thomaides, V Vagner, JM van Dijl, K Watabe, A Wipat, H Yamamoto, M Yamamoto, Y Yamamoto, K Yamane, K Yata, K Yoshida, H Yoshikawa, U Zuber, N Ogasawara
    posted to gene essential bacillus by hryk on 2008-05-13 07:16:00 as ** along with 3 people and 2 groups alanrw ana Serkalem structural_bioinformatics Bioinformatics
  • Genome-scale Reconstruction of Metabolic Network in Bacillus subtilis Based on High-throughput Phenotyping and Gene Essentiality Data.
    J Biol Chem, Vol. 282, No. 39. (28 September 2007), pp. 28791-28799.
    by YK Oh, BO Palsson, SM Park, CH Schilling, R Mahadevan
    posted to network metabolic bacillus by hryk on 2008-05-12 17:43:33 as ** along with 1 person alexg
  • A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
    Mol Syst Biol, Vol. 3 (26 June 2007)
    by Adam M Feist, Christopher S Henry, Jennifer L Reed, Markus Krummenacker, Andrew R Joyce, Peter D Karp, Linda J Broadbelt, Vassily Hatzimanikatis, Bernhard O Palsson
    posted to network metabolic ecoli by hryk on 2008-05-12 17:41:21 as ** along with 2 people alexg cjeans
  • notes Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae.
    Nat Biotechnol, Vol. 22, No. 1. (January 2004), pp. 86-92.
    by J Ihmels, R Levy, N Barkai
    posted to transcript saccharomyces network metabolic by hryk on 2008-05-12 15:06:28 as *** along with 6 people and 4 groups icases adepace nickluscombe koller arne shung EisenLab EBI-regulation TNT dIEMoSIRIS
  • Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
    Mol Syst Biol, Vol. 2, No. 1. (21 February 2006), pp. msb4100050-E1-msb4100050-E11.
    by Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori
    posted to gene essential ecoli by hryk on 2008-05-11 07:18:59 as **** along with 2 people balajis wilsoros
  • Super and inner: together at last!
    (2004), pp. 116-129.
    by David S Goldberg, Robert B Findler, Matthew Flatt
    posted to programming language inheritance informatics by hryk on 2008-05-11 07:09:24 as ** along with 4 people and 1 group assnoodles samth dsilva water451 NU-PRL
  • The evolution of modularity in bacterial metabolic networks
    Proceedings of the National Academy of Sciences (6 May 2008), 0712149105.
    by Anat Kreimer, Elhanan Borenstein, Uri Gophna, Eytan Ruppin
    posted to network metabolic evolution by hryk on 2008-05-11 06:49:47 as ** along with 11 people carlk mjoach saket qwermish deanmalmgren tmmurali skato_toyaku jjray pinney roys phoenixzxl
  • Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast.
    Nature, Vol. 429, No. 6992. (10 June 2004), pp. 661-664.
    by B Papp, C Pál, LD Hurst
    posted to yeast network evolution essential by hryk on 2008-05-11 06:46:45 as *** along with 5 people Takayuki tmmurali bjorns edwardmorrissey stefanoallesina
  • Comparative analysis of essential genes and nonessential genes in Escherichia coli K12.
    Mol Genet Genomics, Vol. 279, No. 1. (January 2008), pp. 87-94.
    by X Gong, S Fan, A Bilderbeck, M Li, H Pang, S Tao
    posted to gene essential ecoli by hryk on 2008-05-02 12:43:15 as **
  • notes Hierarchical structure and the prediction of missing links in networks
    Nature, Vol. 453, No. 7191., pp. 98-101.
    by Aaron Clauset, Cristopher Moore, MEJ Newman
    posted to prediction network by hryk on 2008-05-02 03:14:08 as read along with 35 people sen_cheng jjray rds Borelli ptrobajo apwesolowski dpf cmmorel fbaroni balicea cmor kengg pbull jago Ema gtgt15 nedwards i-stevenson pinney elsantosneto markusd eyliu craigwilson06 jyuh margaritis gagliol bryanhughes akshat tmmurali cactus AbnerCYH tny briordan deanmalmgren soramame_0518
  • notes Evolvability and hierarchy in rewired bacterial gene networks
    Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845.
    by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia Garriga-Canut, Luis Serrano
    posted to network evolution ecoli by hryk on 2008-04-28 11:49:40 as read along with 15 people and 4 groups michaelbarton austin AbnerCYH margaritis cactus dbikard Garamonfok caseybrown biehl aalibes tmmurali dullhunk neils cmzmasek josedavid BergmanLab SynBioSys Centre de Recherches Interdisciplinaires GEB
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