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higueruelos 2007 [132 articles]

Senaste hänvisningarna i higueruelos bibliotek insorterade under taggen 2007. You can also see everyone's 2007.
  • A5, a New Small-Molecule Inhibitor of CD4 D1 Obtained from a Computer-Aided Screening Method, Contributes to the Inhibition of CD4+ T-cell Function
    J Biomol Screen, Vol. 12, No. 6. (1 September 2007), pp. 800-808.
    by He Xiao, Jian-Nan Feng, Zu-Yin Yu, Lei Zhang, Ming Yu, Xin-Hua He, Song Li, Bei-Fen Shen, Yan Li
    posted to 2007 cd4 ppi sm xf by higueruelo on 2008-07-18 11:26:30 as ***
  • Protein-protein recognition and interaction hot spots in an antigen-antibody complex: free energy decomposition identifies "efficient amino acids".
    Proteins, Vol. 67, No. 2. (1 May 2007), pp. 418-434.
    posted to 2007 ab hotspots ppi thermo by higueruelo on 2008-07-18 11:22:41 as ** along with 1 person jteyra
  • Kinase packing defects as drug targets.
    Drug discovery today, Vol. 12, No. 21-22. (November 2007), pp. 917-923.
    posted to 2007 dehydrons kinases sm by higueruelo on 2008-07-17 11:52:03 as **
  • Protein flexibility and species specificity in structure-based drug discovery: dihydrofolate reductase as a test system.
    Journal of the American Chemical Society, Vol. 129, No. 12. (28 March 2007), pp. 3634-3640.
    by AL Bowman, MG Lerner, HA Carlson
    posted to 2007 dhfr flexibility by higueruelo on 2008-07-07 11:54:33 as **
  • Exploring experimental sources of multiple protein conformations in structure-based drug design.
    Journal of the American Chemical Society, Vol. 129, No. 26. (4 July 2007), pp. 8225-8235.
    by KL Damm, HA Carlson
    posted to 2007 flexibility hiv1 nmr by higueruelo on 2008-07-07 11:44:18 as **
  • Pepitope: epitope mapping from affinity-selected peptides
    Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3244-3246.
    by Itay Mayrose, Osnat Penn, Elana Erez, Nimrod D Rubinstein, Tomer Shlomi, Natalia T Freund, Erez M Bublil, Eytan Ruppin, Roded Sharan, Jonathan M Gershoni, Eric Martz, Tal Pupko
    posted to 2007 ab pepitope peptides ppi by higueruelo on 2008-07-01 10:47:21 as **
  • How Different are Structurally Flexible and Rigid Binding Sites? Sequence and Structural Features Discriminating Proteins that Do and Do not Undergo Conformational Change upon Ligand Binding.
    J Mol Biol (29 September 2006)
    by Kannan Gunasekaran, Ruth Nussinov
  • Design and Development of Small Molecules for Specific Targeted Therapy of Diffuse Large B-Cell Lymphoma.
    ASH Annual Meeting Abstracts, Vol. 110, No. 11. (16 November 2007), 799.
    by Gustavo F Da Silva, Alex Ghetu, Leandro Cerchietti, Jose M Polo, Andrew Coop, Alexander Mackerell, Gilbert G Prive, Ari Melnick
    posted to 2007 bcl6 ppi sm xf by higueruelo on 2008-04-01 15:39:05 as ***
  • Development of Allosteric Inhibitors of the Interaction of AML1 and CBF for the Treatment of Leukemia.
    ASH Annual Meeting Abstracts, Vol. 110, No. 11. (16 November 2007), 653.
    by Michael G Douvas, L Roudaiya, J Grembecka, N Speck, JH Bushweller
    posted to 2007 allosteric cbf ppi sm xf by higueruelo on 2008-04-01 15:36:05 as ***
  • Development of Small Molecule Inhibitors of the AML1-ETO and CBF -SMMHC Oncoproteins.
    ASH Annual Meeting Abstracts, Vol. 110, No. 11. (16 November 2007), 1591.
    by Jolanta E Grembecka, Kristin Graf, Yali Kong, Michael Douvas, Tomasz Cierpicki, Anuradha Illendula, Gwen Baber, Izabela Bielnicka, Liya Roudaia, Nancy A Speck, Milton L Brown, John H Bushweller
    posted to 2007 allosteric cbf ppi sm xf by higueruelo on 2008-04-01 15:33:14 as ***
  • Surface Plasmon Resonance Study of Apoptotic Regulators Bcl-2, Bcl-w, Bcl-XL, and Mcl-1 Indicate That the Preclinical Small Molecule Inhibitor (SMI) TW-37 Binds to the Hydrophobic Groove Competitively with tBid To Form a Heterodimer Which Cannot Be Disrupted by 200-Fold Molar Excess of TW-37.
    ASH Annual Meeting Abstracts, Vol. 110, No. 11. (16 November 2007), 1606.
    by Anton-Scott Goustin, Anshu Giri, Shaomeng Wang, Ayad Al-Katib, Mohammad M Ramzi
    posted to 2007 bcl2 bclxl ppi sm by higueruelo on 2008-04-01 15:30:37 as **
  • Spatial chemical conservation of hot spot interactions in protein-protein complexes
    BMC Biology, Vol. 5 (09 October 2007), 43.
    by Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J Wolfson
  • Overcoming the Inadequacies or Limitations of Experimental Structures as Drug Targets by Using Computational Modeling Tools and Molecular Dynamics Simulations
    ChemMedChem, Vol. 2, No. 10. (2007), pp. 1388-1401.
    by Esther Marco, Federico Gago
    posted to 2007 dynamics flexibility nma review xf by higueruelo on 2008-03-25 15:02:25 as *** along with 1 person dimka
  • Coupling of antibodies with biotin.
    Methods Mol Biol, Vol. 418 (2007), pp. 13-24.
    by RP Haugland, WW You
    posted to 2007 ab biotin by higueruelo on 2008-02-26 09:52:07 as **
  • Similar binding sites and different partners: implications to shared proteins in cellular pathways.
    Structure, Vol. 15, No. 3. (March 2007), pp. 341-354.
    posted to 2007 interface ppi xf by higueruelo on 2008-02-25 12:59:14 as *** along with 3 people bicko choonpeng marti
  • A new paradigm for protein kinase inhibition: blocking phosphorylation without directly targeting ATP binding.
    Drug Discov Today, Vol. 12, No. 15-16. (August 2007), pp. 622-633.
    by Marie A A Bogoyevitch, David P P Fairlie
    posted to 2007 allosteric kinases by higueruelo on 2008-02-22 17:32:53 as ** along with 3 people xtizon bicko zimbo1
  • Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation
    Current Opinion in Structural Biology, Vol. 17, No. 6. (December 2007), pp. 633-640.
    by Ivet Bahar, Chakra Chennubhotla, Dror Tobi
  • RapperTK : a versatile engine for discrete restraint-based conformational sampling of macromolecules
    BMC Structural Biology, Vol. 7 (21 March 2007), 13.
    by Swanand P Gore, Anjum M Karmali, Tom L Blundell
    posted to 2007 flexibility rapper by higueruelo on 2008-02-20 19:53:18 as **
  • Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions.
    J Proteome Res, Vol. 6, No. 5. (May 2007), pp. 1882-1898.
    posted to 2007 disorder by higueruelo on 2008-02-20 18:34:20 as **
  • Functional anthology of intrinsic disorder. 2. Cellular components, domains, technical terms, developmental processes, and coding sequence diversities correlated with long disordered regions.
    J Proteome Res, Vol. 6, No. 5. (May 2007), pp. 1899-1916.
    posted to 2007 disorder by higueruelo on 2008-02-20 18:33:49 as **
  • Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins.
    J Proteome Res, Vol. 6, No. 5. (May 2007), pp. 1917-1932.
    posted to 2007 disorder by higueruelo on 2008-02-20 18:33:18 as **
  • Characterization of molecular recognition features, MoRFs, and their binding partners.
    J Proteome Res, Vol. 6, No. 6. (June 2007), pp. 2351-2366.
    by V Vacic, CJ Oldfield, A Mohan, P Radivojac, MS Cortese, VN Uversky, AK Dunker
    posted to 2007 disorder flexibility morfs xf by higueruelo on 2008-02-11 16:34:42 as ***
  • DisProt: the Database of Disordered Proteins.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by M Sickmeier, JA Hamilton, T LeGall, V Vacic, MS Cortese, A Tantos, B Szabo, P Tompa, J Chen, VN Uversky, Z Obradovic, AK Dunker
  • Phage display for engineering and analyzing protein interaction interfaces
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Sachdev S Sidhu, Shohei Koide
    posted to 2007 method phage ppi by higueruelo on 2008-02-11 16:26:14 as ** along with 1 person carlescorbi
  • Interaction geometry involving planar groups in protein-protein interfaces
    Proteins: Structure, Function, and Bioinformatics, Vol. 67, No. 1. (2007), pp. 84-97.
    by Rudra P Saha, Rajasri Bhattacharyya, Pinak Chakrabarti
    posted to 2007 interface ppi by higueruelo on 2008-02-11 13:35:24 as *** along with 2 people bicko choonpeng
  • Interaction-Site Prediction for Protein Complexes: a Critical Assessment
    Bioinformatics (22 June 2007), btm323.
    by Huan-Xiang Zhou, Sanbo Qin
  • Computational approach to site-directed ligand discovery.
    Proteins, Vol. 68, No. 2. (19 April 2007), pp. 551-560.
    by Gergely Tóth, Kiran Mukhyala, James A A Wells
  • Protein-protein docking: overview and performance analysis.
    Methods Mol Biol, Vol. 413 (2007), pp. 283-314.
    by K Wiehe, MW Peterson, B Pierce, J Mintseris, Z Weng
    posted to 2007 ppdocking review by higueruelo on 2008-02-03 11:46:17 as **
  • Computational analyses of the surface properties of proteinâprotein interfaces
    Acta Crystallographica Section D Biological Crystallography
    posted to 2007 interface ppi by higueruelo on 2008-02-03 11:43:13 as read along with 1 person bicko
  • A robustness-based approach to systems-oriented drug design
    Nature Reviews Drug Discovery, Vol. 6, No. 3. (23 February 2007), pp. 202-210.
    by Hiroaki Kitano
    posted to 2007 systemsbio by higueruelo on 2008-02-03 11:41:58 as ** along with 2 people bicko massivemayhem
  • Small-angle X-ray scattering from RNA, proteins, and protein complexes.
    Annu Rev Biophys Biomol Struct, Vol. 36 (2007), pp. 307-327.
    posted to 2007 ppi review saxs struct-determination by higueruelo on 2008-02-03 11:31:21 as **
  • Structural characterization of flexible proteins using small-angle X-ray scattering.
    J Am Chem Soc, Vol. 129, No. 17. (2 May 2007), pp. 5656-5664.
  • Structural analysis of flexible proteins in solution by small angle X-ray scattering combined with crystallography.
    J Struct Biol, Vol. 158, No. 2. (May 2007), pp. 214-223.
    by SE Tsutakawa, GL Hura, KA Frankel, PK Cooper, JA Tainer
    posted to 2007 flexibility saxs struct-determination by higueruelo on 2008-02-03 11:28:38 as **
  • Determining the architectures of macromolecular assemblies
    Nature, Vol. 450, No. 7170., pp. 683-694.
    by Frank Alber, Svetlana Dokudovskaya, Liesbeth M Veenhoff, Wenzhu Zhang, Julia Kipper, Damien Devos, Adisetyantari Suprapto, Orit Karni-Schmidt, Rosemary Williams, Brian T Chait, Michael P Rout, Andrej Sali
  • Protein-Protein Interaction Hotspots Carved into Sequences.
    PLoS Comput Biol, Vol. 3, No. 7. (13 July 2007)
    by Yanay Ofran, Burkhard Rost
  • Towards drugs targeting multiple proteins in a systems biology approach.
    Curr Top Med Chem, Vol. 7, No. 10. (2007), pp. 943-951.
    by O Keskin, A Gursoy, B Ma, R Nussinov
    posted to 2007 druggable systemsbio by higueruelo on 2008-02-03 11:06:12 as ** along with 1 person bicko
  • Protein-Protein Interfaces: Properties, Preferences, and Projections
    J. Proteome Res., Vol. 6, No. 7. (6 July 2007), pp. 2576-2586.
    by JJ Headd, YEA Ban, P Brown, H Edelsbrunner, M Vaidya, J Rudolph
    posted to 2007 interface ppi by higueruelo on 2008-02-03 11:02:40 as read along with 1 person mmuecke
  • Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners
    PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e43.
    by Benjamin A Shoemaker, Anna R Panchenko
  • Deciphering Protein–Protein Interactions. Part I. Experimental Techniques and Databases
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e42.
    by Benjamin A Shoemaker, Anna R Panchenko
  • Isotopically discriminated NMR spectroscopy: a tool for investigating complex protein interactions in vitro.
    J Am Chem Soc, Vol. 129, No. 20. (23 May 2007), pp. 6528-6535.
    by AP Golovanov, RT Blankley, JM Avis, W Bermel
    posted to 2007 nmr ppi struct-determination by higueruelo on 2008-02-03 10:50:58 as read along with 1 person rph
  • Exploitation of structural and regulatory diversity in glutamate racemases
    Nature, Vol. 447, No. 7146., pp. 817-822.
    by Tomas Lundqvist, Stewart L Fisher, Gunther Kern, Rutger HA Folmer, Yafeng Xue, Trevor D Newton, Thomas A Keating, Richard A Alm, Boudewijn LM de Jonge
    posted to 2007 allosteric astrazeneca xf by higueruelo on 2008-02-03 10:46:27 as ***
  • Protein complexes in the gas phase: technology for structural genomics and proteomics.
    Chem Rev, Vol. 107, No. 8. (August 2007), pp. 3544-3567.
    by JL Benesch, BT Ruotolo, DA Simmons, CV Robinson
    posted to 2007 ms ppi review struct-determination by higueruelo on 2008-02-03 10:42:51 as **
  • Bridging from molecular simulation to biochemical networks.
    Curr Opin Struct Biol, Vol. 17, No. 2. (April 2007), pp. 166-172.
    by M Stein, RR Gabdoulline, RC Wade
  • The molecular architecture of protein-protein binding sites
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Dana Reichmann, Ofer Rahat, Mati Cohen, Hani Neuvirth, Gideon Schreiber
  • A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand binding sites.
    BMC Bioinformatics, Vol. 8 Suppl 4 (2007)
    by L Xie, PE Bourne
    posted to 2007 pocket shape xf by higueruelo on 2008-02-02 19:34:56 as *** along with 1 person tjimenez
  • The emergence of peptides as therapeutic drugs for the inhibition of HIV-1.
    AIDS Rev, Vol. 9, No. 4. (c 2007), pp. 208-217.
    posted to 2007 hiv1 peptides ppi xf by higueruelo on 2008-02-02 19:25:43 as ***
  • The Challenge of Drugging Undruggable Targets in Cancer: Lessons Learned from Targeting BCL-2 Family Members
    Clin Cancer Res, Vol. 13, No. 24. (15 December 2007), pp. 7264-7270.
    by Gregory L Verdine, Loren D Walensky
    posted to 2007 bcl2 ppi review sm xf by higueruelo on 2008-02-02 11:37:16 as *** along with 1 person paulschlesinger
  • Macromolecular recognition in the Protein Data Bank
    Acta Crystallographica Section D Biological Crystallography
    posted to 2007 interface ppi review by higueruelo on 2008-01-27 18:28:36 as ** along with 1 person bicko
  • Peptide segments in protein-protein interfaces.
    J Biosci, Vol. 32, No. 1. (January 2007), pp. 101-111.
    posted to 2007 interface peptides ppi xf by higueruelo on 2008-01-27 18:27:37 as **
  • So how do you know you have a macromolecular complex?
    Acta Crystallographica Section D Biological Crystallography
    posted to 2007 complex ppi struct-determination by higueruelo on 2008-01-27 18:22:17 as **
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