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higueruelos library [405 articles]

Senaste artiklarna i higueruelos bibliotek.
  • Cooperativity and biological complexity
    Nat Chem Biol, Vol. 4, No. 8. (2008), pp. 435-439.
    by Adrian Whitty
    posted to review flexibility allosteric 2008 by higueruelo on 2008-09-05 16:27:00 as ** along with 2 people paulschlesinger phoenixzxl
  • Small molecules targeting p53 to improve antitumor therapy.
    Mini reviews in medicinal chemistry, Vol. 8, No. 9. (August 2008), pp. 856-868.
    by GL Beretta, L Gatti, V Benedetti, P Perego, F Zunino
    posted to xf sm review ppi p53 2008 by higueruelo on 2008-09-05 12:20:01 as ***
  • Expanding circle of inhibition: small-molecule inhibitors of bcl-2 as anticancer cell and antiangiogenic agents.
    Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 26, No. 25. (1 September 2008), pp. 4180-4188.
    by BD Zeitlin, IJ Zeitlin, JE Nör
    posted to xf sm ppi bcl2 2008 by higueruelo on 2008-09-04 16:19:59 as ***
  • Targeting the MDM2-p53 Interaction for Cancer Therapy.
    Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 17. (1 September 2008), pp. 5318-5324.
    by S Shangary, S Wang
    posted to xf sm review ppi p53 mdm2 2008 by higueruelo on 2008-09-04 16:18:00 as ***
  • Non-peptidic small molecule inhibitors against Bcl-2 for cancer therapy.
    Journal of cellular physiology (2 September 2008)
    by Asfar S S Azmi, Ramzi M M Mohammad
    posted to xf sm review ppi bcl2 2008 by higueruelo on 2008-09-04 16:16:42 as ***
  • Modulation of biomolecular interactions with complex-binding small molecules.
    Methods (San Diego, Calif.) (18 June 2008)
    by Zheng Cai, Mark I I Greene, Alan Berezov
    posted to xf sm ppi method denovo 2008 by higueruelo on 2008-09-03 17:19:28 as ***
  • High-throughput screening assays to discover small-molecule inhibitors of protein interactions.
    Current drug discovery technologies, Vol. 5, No. 3. (August 2008), pp. 190-199.
    by P Colas
    posted to xf sm review ppi method assays 2008 by higueruelo on 2008-09-03 17:17:27 as ***
  • Small-molecule inhibitors of protein-protein interactions.
    Current opinion in drug discovery & development, Vol. 11, No. 5. (September 2008), pp. 666-674.
    by T Berg
    posted to xf sm review ppi 2008 by higueruelo on 2008-09-03 17:10:46 as ***
  • Inhibition of transcription factors with small organic molecules.
    Current opinion in chemical biology (13 August 2008)
    by Thorsten Berg
    posted to 2008 ppi review sm tf xf by higueruelo on 2008-08-29 13:35:11 as ***
  • Modulating G-Protein Coupled Receptor/G-Protein Signal Transduction by Small Molecules Suggested by Virtual Screening
    J. Med. Chem. (16 August 2008)
    by Christina M Taylor, Yaniv Barda, Oleg G Kisselev, Garland R Marshall
    posted to 2008 gpcr ppi sm xf by higueruelo on 2008-08-29 13:33:13 as *** along with 1 person zimbo1
  • Automated clustering of probe molecules from solvent mapping of protein surfaces: new algorithms applied to hot-spot mapping and structure-based drug design.
    Journal of computer-aided molecular design (5 August 2008)
    by Michael G Lerner, Kristin L Meagher, Heather A Carlson
    posted to 2008 hotspots pocket ppi probes xf by higueruelo on 2008-08-29 13:31:17 as ***
  • A5, a New Small-Molecule Inhibitor of CD4 D1 Obtained from a Computer-Aided Screening Method, Contributes to the Inhibition of CD4+ T-cell Function
    J Biomol Screen, Vol. 12, No. 6. (1 September 2007), pp. 800-808.
    by He Xiao, Jian-Nan Feng, Zu-Yin Yu, Lei Zhang, Ming Yu, Xin-Hua He, Song Li, Bei-Fen Shen, Yan Li
    posted to 2007 cd4 ppi sm xf by higueruelo on 2008-07-18 11:26:30 as ***
  • Protein-protein recognition and interaction hot spots in an antigen-antibody complex: free energy decomposition identifies "efficient amino acids".
    Proteins, Vol. 67, No. 2. (1 May 2007), pp. 418-434.
    by V Lafont, M Schaefer, RH Stote, D Altschuh, A Dejaegere
    posted to 2007 ab hotspots ppi thermo by higueruelo on 2008-07-18 11:22:41 as ** along with 1 person jteyra
  • Kinase packing defects as drug targets.
    Drug discovery today, Vol. 12, No. 21-22. (November 2007), pp. 917-923.
    by A Crespo, A Fernández
    posted to 2007 dehydrons kinases sm by higueruelo on 2008-07-17 11:52:03 as **
  • Induced Disorder in Protein-Ligand Complexes as a Drug-Design Strategy.
    Molecular pharmaceutics (10 July 2008)
    by Alejandro Crespo, Ariel Fernández
    posted to 2008 disorder sm-prot by higueruelo on 2008-07-17 11:36:11 as **
  • Small molecular weight protein-protein interaction antagonists--an insurmountable challenge?
    Current Opinion in Chemical Biology, Vol. 12, No. 3. (June 2008), pp. 281-291.
    by Alexander Dömling
    posted to 2008 mdm2 p53 ppi sm xf by higueruelo on 2008-07-17 10:06:39 as ***
  • Protein flexibility and intrinsic disorder.
    Protein Sci, Vol. 13, No. 1. (January 2004), pp. 71-80.
    by P Radivojac, Z Obradovic, DK Smith, G Zhu, S Vucetic, CJ Brown, JD Lawson, AK Dunker
    posted to 2004 disorder flexibility by higueruelo on 2008-07-17 10:01:06 as ** along with 1 person chad_davis
  • Hot-Spots-Guided Receptor-Based Pharmacophores (HS-Pharm): A Knowledge-Based Approach to Identify Ligand-Anchoring Atoms in Protein Cavities and Prioritize Structure-Based Pharmacophores.
    Journal of chemical information and modeling (21 June 2008)
    by Caterina Barillari, Gilles Marcou, Didier Rognan
    posted to 2008 hotspots sm-prot by higueruelo on 2008-07-15 17:44:56 as **
  • The discovery of small molecule chemical probes of Bcl-X(L) and Mcl-1.
    Bioorganic & medicinal chemistry (18 June 2008)
    by Michael Prakesch, Alexey Yu Y Denisov, Marwen Naim, Kalle Gehring, Prabhat Arya
    posted to 2008 bclxl mcl1 ppi sm xf by higueruelo on 2008-07-14 14:46:54 as ***
  • A novel druglike spleen tyrosine kinase binder prevents anaphylactic shock when administered orally.
    The Journal of allergy and clinical immunology, Vol. 122, No. 1. (July 2008)
    by E Mazuc, BO Villoutreix, O Malbec, T Roumier, S Fleury, JP Leonetti, D Dombrowicz, M Daëron, P Martineau, P Dariavach
    posted to 2008 ppi sm syk xf by higueruelo on 2008-07-11 10:53:15 as ***
  • Applications of isothermal titration calorimetry in protein science.
    Acta biochimica et biophysica Sinica, Vol. 40, No. 7. (July 2008), pp. 565-576.
    by Y Liang
    posted to 2008 itc review thermo by higueruelo on 2008-07-09 13:31:21 as ** along with 1 person jyuh
  • Recent Developments in Fragment-Based Drug Discovery
    Journal of Medicinal Chemistry, Vol. 51, No. 13. (2008), pp. 3661-3680.
    by Miles Congreve, Gianni Chessari, Dominic Tisi, Andrew J Woodhead
    posted to 2008 fragments ppi review sm xf by higueruelo on 2008-07-08 17:43:55 as ***
  • Normal modes and essential dynamics.
    Methods in molecular biology (Clifton, N.J.), Vol. 443 (2008), pp. 89-106.
    by S Hayward, BL de Groot
    posted to 2008 dynamics flexibility nma by higueruelo on 2008-07-07 16:36:48 as ** along with 1 person LamBras
  • Biogeometry: applications of computational geometry to molecular structure.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2005), pp. 1-3.
    by A Tropsha, H Edelsbrunner
    posted to 2005 shape by higueruelo on 2008-07-07 13:41:46 as **
  • Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design.
    Protein Sci, Vol. 7, No. 9. (September 1998), pp. 1884-1897.
    by J Liang, H Edelsbrunner, C Woodward
    posted to 1998 pocket shape by higueruelo on 2008-07-07 13:39:33 as ** along with 2 people tjimenez nickolay
  • Analytical shape computation of macromolecules: II. Inaccessible cavities in proteins.
    Proteins, Vol. 33, No. 1. (1 October 1998), pp. 18-29.
    by J Liang, H Edelsbrunner, P Fu, PV Sudhakar, S Subramaniam
    posted to 1998 pocket shape by higueruelo on 2008-07-07 13:38:05 as ** along with 1 person tjimenez
  • Analytical shape computation of macromolecules: I. Molecular area and volume through alpha shape.
    Proteins, Vol. 33, No. 1. (1 October 1998), pp. 1-17.
    by J Liang, H Edelsbrunner, P Fu, PV Sudhakar, S Subramaniam
    posted to 1998 pocket shape by higueruelo on 2008-07-07 13:37:24 as ** along with 1 person tjimenez
  • On the definition and the construction of pockets in macromolecules.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (1996), pp. 272-287.
    by H Edelsbrunner, M Facello, J Liang
    posted to 1996 pocket by higueruelo on 2008-07-07 13:35:55 as **
  • (Thermo)dynamic role of receptor flexibility, entropy, and motional correlation in protein-ligand binding.
    Chemphyschem : a European journal of chemical physics and physical chemistry, Vol. 9, No. 7. (16 May 2008), pp. 983-988.
    by R Baron, JA McCammon
    posted to 2008 flexibility sm-prot thermo by higueruelo on 2008-07-07 13:22:34 as ** along with 1 person rbaron
  • Entropic contributions and the influence of the hydrophobic environment in promiscuous protein-protein association
    Proceedings of the National Academy of Sciences, Vol. 105, No. 21. (27 May 2008), pp. 7456-7461.
    by Chia-En A Chang, William A Mclaughlin, Riccardo Baron, Wei Wang, Andrew J Mccammon
    posted to 2008 flexibility ppi thermo by higueruelo on 2008-07-07 13:21:09 as ** along with 1 person cactus
  • Protein flexibility and species specificity in structure-based drug discovery: dihydrofolate reductase as a test system.
    Journal of the American Chemical Society, Vol. 129, No. 12. (28 March 2007), pp. 3634-3640.
    by AL Bowman, MG Lerner, HA Carlson
    posted to 2007 dhfr flexibility by higueruelo on 2008-07-07 11:54:33 as **
  • Incorporating protein flexibility in structure-based drug discovery: using HIV-1 protease as a test case.
    J Am Chem Soc, Vol. 126, No. 41. (20 October 2004), pp. 13276-13281.
    by KL Meagher, HA Carlson
    posted to 2004 flexibility hiv1 by higueruelo on 2008-07-07 11:53:20 as ** along with 1 person blackbart
  • Computational studies and peptidomimetic design for the human p53-MDM2 complex.
    Proteins, Vol. 58, No. 1. (1 January 2005), pp. 222-234.
    by H Zhong, HA Carlson
    posted to 2005 mdm2 p53 peptidomimetics ppi by higueruelo on 2008-07-07 11:52:28 as ** along with 1 person blackbart
  • Binding MOAD, a high-quality protein-ligand database.
    Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008)
    by ML Benson, RD Smith, NA Khazanov, B Dimcheff, J Beaver, P Dresslar, J Nerothin, HA Carlson
    posted to 2008 db moad by higueruelo on 2008-07-07 11:49:23 as ** along with 2 people massivemayhem jyuh
  • Binding MOAD (Mother Of All Databases).
    Proteins (21 June 2005)
    by Liegi Hu, Mark L L Benson, Richard D D Smith, Michael G G Lerner, Heather A A Carlson
    posted to 2005 db moad by higueruelo on 2008-07-07 11:48:32 as ** along with 6 people and 10 groups BragilMassoud sangeetha shantanu caporaso blackbart papatonyhill structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology biomedical-nlp insilicodrug
  • Gaussian-weighted RMSD superposition of proteins: a structural comparison for flexible proteins and predicted protein structures.
    Biophys J, Vol. 90, No. 12. (15 June 2006), pp. 4558-4573.
    by KL Damm, HA Carlson
    posted to 2006 flexibility superpose by higueruelo on 2008-07-07 11:46:11 as ** along with 3 people blackbart choonpeng rabio
  • Exploring experimental sources of multiple protein conformations in structure-based drug design.
    Journal of the American Chemical Society, Vol. 129, No. 26. (4 July 2007), pp. 8225-8235.
    by KL Damm, HA Carlson
    posted to 2007 flexibility hiv1 nmr by higueruelo on 2008-07-07 11:44:18 as **
  • Peptide Inhibition of HIV-1 : Current Status and Future Potential.
    BioDrugs : clinical immunotherapeutics, biopharmaceuticals and gene therapy, Vol. 22, No. 3. (2008), pp. 161-175.
    by N Kaushik-Basu, A Basu, D Harris
    posted to 2008 hiv1 peptides review by higueruelo on 2008-07-01 16:54:17 as **
  • Using a beta-hairpin to mimic an alpha-helix: cyclic peptidomimetic inhibitors of the p53-HDM2 protein-protein interaction.
    Angewandte Chemie (International ed. in English), Vol. 43, No. 16. (13 April 2004), pp. 2109-2112.
    by R Fasan, RL Dias, K Moehle, O Zerbe, JW Vrijbloed, D Obrecht, JA Robinson
    posted to 2004 betaturn mdm2 p53 peptidomimetics sm xf by higueruelo on 2008-07-01 16:50:05 as ***
  • Protein ligand design: from phage display to synthetic protein epitope mimetics in human antibody Fc-binding peptidomimetics.
    Journal of the American Chemical Society, Vol. 128, No. 8. (1 March 2006), pp. 2726-2732.
    by RL Dias, R Fasan, K Moehle, A Renard, D Obrecht, JA Robinson
    posted to 2006 ab peptidomimetics phage by higueruelo on 2008-07-01 16:48:52 as **
  • G Protein betagamma Subunits as Targets for Small Molecule Therapeutic Development.
    Combinatorial chemistry & high throughput screening, Vol. 11, No. 5. (June 2008), pp. 382-395.
    by AV Smrcka, DM Lehmann, AL Dessal
    posted to 2008 gbetagamma gpcr method ppi sm vs by higueruelo on 2008-07-01 16:20:22 as **
  • Interfering with protein-protein interactions: potential for cancer therapy.
    Cell cycle (Georgetown, Tex.), Vol. 7, No. 11. (June 2008), pp. 1569-1574.
    by T Tanaka, TH Rabbitts
    posted to 2008 ab cancer ppi ras by higueruelo on 2008-07-01 14:46:24 as **
  • Fluorescence and bioluminescence procedures for functional proteomics.
    Proteomics (18 February 2008)
    by Anke Prinz, Gregor Reither, Mandy Diskar, Carsten Schultz
    posted to 2008 fret method review by higueruelo on 2008-07-01 14:43:52 as ** along with 1 person jyuh
  • Exploring the Energy Landscape of Antibody-Antigen Complexes: Protein Dynamics, Flexibility, and Molecular Recognition
    Biochemistry, Vol. 47, No. 27. (8 July 2008), pp. 7237-7247.
    by Megan C Thielges, Jörg Zimmermann, Wayne Yu, Masayuki Oda, Floyd E Romesberg
    posted to 2008 ab dynamics flexibility by higueruelo on 2008-07-01 14:10:41 as **
  • Screening for Antiviral Inhibitors of the HIV Integrase--LEDGF/p75 Interaction Using the AlphaScreenTM Luminescent Proximity Assay
    J Biomol Screen, Vol. 13, No. 5. (1 June 2008), pp. 406-414.
    by Yan Hou, Debra E Mcguinness, Andrew J Prongay, Boris Feld, Paul Ingravallo, Robert A Ogert, Charles A Lunn, John A Howe
    posted to 2008 hiv1 method ppi sm xf by higueruelo on 2008-07-01 11:26:23 as ***
  • Pepitope: epitope mapping from affinity-selected peptides
    Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3244-3246.
    by Itay Mayrose, Osnat Penn, Elana Erez, Nimrod D Rubinstein, Tomer Shlomi, Natalia T Freund, Erez M Bublil, Eytan Ruppin, Roded Sharan, Jonathan M Gershoni, Eric Martz, Tal Pupko
    posted to 2007 ab pepitope peptides ppi by higueruelo on 2008-07-01 10:47:21 as **
  • Computational prediction of the cross-reactive neutralizing epitope corresponding to the monoclonal antibody b12 specific for HIV-1 gp120
    FASEB J., Vol. 20, No. 11. (1 September 2006), pp. 1762-1774.
    by Erez M Bublil, Sharon Yeger-Azuz, Jonathan M Gershoni
    posted to 2006 ab mapitope peptides phage by higueruelo on 2008-07-01 10:46:03 as **
  • Web Server To Identify Similarity of Amino Acid Motifs to Compounds (SAAMCO)
    J. Chem. Inf. Model. (21 June 2008)
    by Fergal P Casey, Norman E Davey, Ivan Baran, Radka S Varekova, Denis C Shields
    posted to 2008 peptidomimetics ppi sm by higueruelo on 2008-06-27 17:08:21 as **
  • KFC Server: interactive forecasting of protein interaction hot spots.
    Nucleic acids research (6 June 2008)
    by Steven J J Darnell, Laura Legault, Julie C C Mitchell
    posted to 2008 hotspots ppi by higueruelo on 2008-06-24 20:37:59 as ** along with 1 person marti
  • Recognition Dynamics Up to Microseconds Revealed from an RDC-Derived Ubiquitin Ensemble in Solution
    Science, Vol. 320, No. 5882. (13 June 2008), pp. 1471-1475.
    by Oliver F Lange, Nils-Alexander Lakomek, Christophe Fares, Gunnar F Schroder, Korvin F Walter, Stefan Becker, Jens Meiler, Helmut Grubmuller, Christian Griesinger, Bert L de Groot
    posted to 2008 dynamics flexibility by higueruelo on 2008-06-24 20:09:59 as ** along with 4 people and 3 groups paulschlesinger barry jmccammon cchang structural_bioinformatics McCammon group
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