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grahamcs library [372 articles]

Senaste artiklarna i grahamcs bibliotek.
  • Discovery of a Cytokine and Its Receptor by Functional Screening of the Extracellular Proteome
    Science, Vol. 320, No. 5877. (9 May 2008), pp. 807-811.
    by Haishan Lin, Ernestine Lee, Kevin Hestir, Cindy Leo, Minmei Huang, Elizabeth Bosch, Robert Halenbeck, Ge Wu, Aileen Zhou, Dirk Behrens, Diane Hollenbaugh, Thomas Linnemann, Minmin Qin, Justin Wong, Keting Chu, Stephen K Doberstein, Lewis T Williams
    posted to methods ecm by grahamc on 2008-05-28 03:22:17 as ** along with 1 person jyuh
  • An in Vivo Map of the Yeast Protein Interactome
    Science (8 May 2008), 1153878.
    by Kirill Tarassov, Vincent Messier, Christian R Landry, Stevo Radinovic, Mercedes M Molina, Igor Shames, Yelena Malitskaya, Jackie Vogel, Howard Bussey, Stephen W Michnick
    posted to yeast protein-protein interactions by grahamc on 2008-05-28 03:17:01 as ** along with 7 people tmmurali aubinhon jyuh brianb neils cabbagesofdoom phoenixzxl
  • Wound repair and regeneration
    Nature, Vol. 453, No. 7193. (14 May 2008), pp. 314-321.
    by Geoffrey C Gurtner, Sabine Werner, Yann Barrandon, Michael T Longaker
    posted to wound_repair by grahamc on 2008-05-28 02:55:58 as ** along with 2 people nickpitman lisa1
  • A map of human protein interactions derived from co-expression of human mRNAs and their orthologs
    Mol Syst Biol, Vol. 4 (15 April 2008)
    by Arun K Ramani, Zhihua Li, Traver G Hart, Mark W Carlson, Daniel R Boutz, Edward M Marcotte
    posted to protein-protein prediction interactions human co-expression by grahamc on 2008-05-28 02:49:05 as *** along with 7 people and 1 group ptrobajo zwang ardalby giovanni tmmurali biomcgary phoenixzxl OPIG
  • Gene expression profiling of human prostate cancer stem cells reveals a pro-inflammatory phenotype and the importance of extracellular matrix interactions
    Genome Biology, Vol. 9 (20 May 2008), R83.
    by Richard Birnie, Steven D Bryce, Claire Roome, Vincent Dussupt, Alastair Droop, Shona H Lang, Paul A Berry, Catherine F Hyde, John L Lewis, Michael J Stower, Norman J Maitland, Anne T Collins
    posted to ecm disease cancer by grahamc on 2008-05-28 02:26:19 as **
  • Mapping proteins to disease terminologies: from UniProt to MeSH.
    BMC bioinformatics, Vol. 9 Suppl 5 (2008)
    by A Mottaz, YL Yip, P Ruch, AL Veuthey
    posted to tools mesh_terms disease annotation by grahamc on 2008-05-28 02:14:25 as ** along with 2 people maralena jyuh
  • Gene Ontology annotations: what they mean and where they come from.
    BMC bioinformatics, Vol. 9 Suppl 5 (2008)
    by DP Hill, B Smith, MS McAndrews-Hill, JA Blake
    posted to gene_ontology by grahamc on 2008-05-28 02:12:43 as ** along with 5 people and 1 group carlk lmichan dchughes jyuh mariakmejia e-research en ciencias médicas y biológicas
  • Cytoscape ESP: simple search of complex biological networks.
    Bioinformatics (Oxford, England) (28 April 2008)
    by Maital Ashkenazi, Gary D D Bader, Allan Kuchinsky, Menachem Moshelion, David J J States
    posted to tools cytoscape by grahamc on 2008-05-28 01:58:26 as ** along with 4 people renatomilani jyuh kengg maralena
  • UniProtJAPI: A remote API for accessing UniProt data.
    Bioinformatics (Oxford, England) (4 April 2008)
    by Samuel Patient, Daniela Wieser, Michael Kleen, Ernst Kretschmann, Maria Jesus J Martin, Rolf Apweiler
    posted to uniprot tools java api by grahamc on 2008-05-28 01:54:53 as ** along with 3 people wisdom_love jyuh dullhunk
  • Analyzing Protein Interaction Networks Using Structural Information
    Annual Review of Biochemistry, Vol. 77, No. 1. (2008)
    by Christina Kiel, Pedro Beltrao, Luis Serrano
    posted to tools review network_biology bioinformatics by grahamc on 2008-05-01 07:24:30 as ** along with 3 people paolomarcatili neils Evangelia
  • Protein complexes and functional modules in molecular networks.
    Proc Natl Acad Sci U S A, Vol. 100, No. 21. (14 October 2003), pp. 12123-12128.
    by V Spirin, LA Mirny
    posted to protein-protein interactions function_prediction biological_networks by grahamc on 2008-04-23 17:38:21 as ** along with 11 people and 4 groups ellakat carlk biehl camster kentsis ujh tmmurali dragonrez karfunkel joseph_x_zhou Evangelia dbk-lab biophysics HIV_DR bioNetwork_sysBio
  • A new way to explore the world of extracellular protein interactions
    Genome Res., Vol. 18, No. 4. (1 April 2008), pp. 517-520.
    by Christopher M Sanderson
    posted to protein-protein methods interactions by grahamc on 2008-04-23 17:34:40 as ** along with 1 person carlk
  • Flexible web-based integration of distributed large-scale human protein interaction maps
    Journal of Integrative Bioinformatics, Vol. 4, No. 1. (2007), pp. 51-61.
    by Gautam Chaurasia, Yasir Iqbal, Christian Hänig, Hanspeter Herzel, Erich E Wanker, Matthias E Futschik
    posted to tools protein-protein interactions human data_integration database bioinformatics by grahamc on 2008-04-23 17:13:15 as read
  • UniHI: an entry gate to the human protein interactome.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by G Chaurasia, Y Iqbal, C Hänig, H Herzel, EE Wanker, ME Futschik
    posted to tools protein-protein interactions human data_integration biological_networks bioinformatics by grahamc on 2008-04-23 17:04:53 as read along with 3 people jyuh jfr massivemayhem
  • A tree kernel to analyse phylogenetic profiles.
    Bioinformatics, Vol. 18 Suppl 1 (2002)
    by JP Vert
    posted to phylogenetic_analysis by grahamc on 2008-04-18 19:02:10 as ** along with 2 people bioinfo girschick
  • Topology-Bayes versus Clade-Bayes in Phylogenetic Analysis
    Mol Biol Evol (12 December 2007), msm274.
    by Ward C Wheeler, Kurt M Pickett
    posted to phylogenetic_analysis by grahamc on 2008-04-18 18:57:10 as ** along with 1 person cjeans
  • Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome.
    Genome Biol, Vol. 6, No. 5. (2005)
    by AK Ramani, RC Bunescu, RJ Mooney, EM Marcotte
    posted to data_integration human interactions protein-protein by grahamc on 2008-04-16 18:59:40 as ** along with 16 people and 3 groups setar tmmurali dragonrez okarsligil lfriedl ccots balajis maryee brant opheliav davidandrzej wnpx rlhsiao bundschu mikaelhuss raiyar kdl Bioinformatics generif_paper
  • Towards a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae.
    Mol Cell Proteomics (2 January 2007)
    by Sean R R Collins, Patrick Kemmeren, Xue-Chu C Zhao, Jack F F Greenblatt, Forrest Spencer, Frank C C Holstege, Jonathan S S Weissman, Nevan J J Krogan
    posted to interactions model_organisms network_biology protein-protein yeast by grahamc on 2008-03-28 21:34:06 as ** along with 4 people and 1 group paolomarcatili csanford nickluscombe roys EBI-regulation
  • A probabilistic view of gene function.
    Nat Genet, Vol. 36, No. 6. (June 2004), pp. 559-564.
    by AG Fraser, EM Marcotte
    posted to function_prediction genomics by grahamc on 2008-03-28 20:50:08 as ** along with 9 people and 1 group snuppepuppan ziquje lfriedl opheliav wnpx samal massivemayhem bootsy vietanh0 kdl
  • Comparative assessment of large-scale data sets of protein-protein interactions.
    Nature, Vol. 417, No. 6887. (23 May 2002), pp. 399-403.
    by C von Mering, R Krause, B Snel, M Cornell, SG Oliver, S Fields, P Bork
    posted to interactions network_confidence protein-protein statistics by grahamc on 2008-03-28 20:49:11 as ** along with 19 people and 6 groups carlk camster barry dragonrez bicko lfriedl chad_davis alexg j3xucite bundschu yeastyboy ruvido raiyar iris_2001 cmor shu Evangelia shikin Pao-Yang dbk-lab structural_bioinformatics kdl Bioinformatics generif_paper GeneGo
  • Insights into Protein-Protein Interfaces using a Bayesian Network Prediction Method
    Journal of Molecular Biology, Vol. In Press, Corrected Proof
    by James R Bradford, Chris J Needham, Andrew J Bulpitt, David R Westhead
    posted to methods network_biology prediction by grahamc on 2008-03-28 20:46:28 as ** along with 7 people and 2 groups paolomarcatili marti barry conkymacro ameetsoni massivemayhem phoenixzxl structural_bioinformatics Bioinformatics
  • Computational analysis of human protein interaction networks.
    Proteomics, Vol. 7, No. 15. (August 2007), pp. 2541-2552.
    by F Ramírez, A Schlicker, Y Assenov, T Lengauer, M Albrecht
    posted to data_integration human interactions network_biology protein-protein by grahamc on 2008-03-28 20:45:02 as ** along with 4 people carlk paolomarcatili jyuh balicea
  • Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae
    Journal of Biology, Vol. 5, No. 4. (08 June 2006), 11.
    by Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, Bobby-Joe Breitkreutz, Gary C Hon, Chad L Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga G Troyanskya, Trey Ideker, Kara Dolinski, Nizar N Batada, Mike Tyers
    posted to interactions model_organisms network_biology protein-protein yeast by grahamc on 2008-03-28 20:43:03 as ** along with 17 people and 3 groups chasmand snuppepuppan tmmurali lfriedl balajis wnpx nickluscombe egralla citecat noano koller iris_2001 sgoetz shikin s041629 pmendes mtruksa kdl EBI-regulation GeneGo
  • Discovery of biological networks from diverse functional genomic data.
    Genome Biol, Vol. 6, No. 13. (2005)
    by CL Myers, D Robson, A Wible, MA Hibbs, C Chiriac, CL Theesfeld, K Dolinski, OG Troyanskaya
    posted to function_prediction genomics network_biology by grahamc on 2008-03-28 20:41:42 as ** along with 1 person carlk
  • Hierarchical multi-label prediction of gene function.
    Bioinformatics (12 January 2006)
    by Zafer Barutcuoglu, Robert E E Schapire, Olga G G Troyanskaya
    posted to function_prediction statistics by grahamc on 2008-03-28 20:39:59 as ** along with 2 people carlk uknandal
  • Finding function: evaluation methods for functional genomic data
    BMC Genomics, Vol. 7 (25 July 2006), 187.
    by Chad L Myers, Daniel R Barrett, Matthew A Hibbs, Curtis Huttenhower, Olga G Troyanskaya
    posted to function_prediction genomics network_biology network_confidence statistics by grahamc on 2008-03-28 20:39:02 as ** along with 7 people and 2 groups cerca marck carlk tjimenez jfr smbaxtersf dejori ic4 generif_paper
  • Context-sensitive data integration and prediction of biological networks
    Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2322-2330.
    by Chad L Myers, Olga G Troyanskaya
    posted to data_integration network_biology by grahamc on 2008-03-28 20:37:21 as ** along with 7 people carlk jyuh tmmurali rdiaz iris_2001 nedwards shung
  • Effect of sampling on topology predictions of protein-protein interaction networks
    Nature Biotechnology, Vol. 23, No. 7. (07 July 2005), pp. 839-844.
    by Jing-Dong J Han, Denis Dupuy, Nicolas Bertin, Michael E Cusick, Marc Vidal
    posted to interactions network_biology network_topology protein-protein by grahamc on 2008-03-28 20:30:40 as ** along with 11 people carlk paolomarcatili snuppepuppan kuhn rabbat gurkanbebek koller eukfn mikaelhuss cjeans iris_2001
  • Computational systems biology.
    Nature, Vol. 420, No. 6912. (14 November 2002), pp. 206-210.
    by H Kitano
    posted to review systems_biology by grahamc on 2008-03-28 20:29:21 as ** along with 14 people and 5 groups shikin irenas rhem1224 lyongu eweaver wnpx ddahlem shivakumar3_14 os252 dgront mmt livingthingdan agileproteomics maburkitt GeneGo dbk-lab TCR_Signaling SysbioMPI-TCells livingthing
  • Genomic analysis of essentiality within protein networks.
    Trends Genet, Vol. 20, No. 6. (June 2004), pp. 227-231.
    by H Yu, D Greenbaum, H Xin Lu, X Zhu, M Gerstein
    posted to genomics interactions network_biology protein-protein by grahamc on 2008-03-28 20:28:34 as ** along with 3 people and 1 group shikin niolis nickluscombe EBI-regulation
  • Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction.
    Curr Opin Microbiol, Vol. 7, No. 5. (October 2004), pp. 535-545.
    by R Jansen, M Gerstein
    posted to function_prediction genomics network_biology network_confidence standards by grahamc on 2008-03-28 20:26:40 as ** along with 5 people and 2 groups carlk okarsligil lfriedl wnpx neils kdl Bioinformatics
  • PROTEOMICS: Enhanced: Integrating Interactomes
    Science, Vol. 295, No. 5553. (11 January 2002), pp. 284-287.
    by Mark Gerstein, Ning Lan, Ronald Jansen
    posted to data_integration interactions by grahamc on 2008-03-28 20:25:16 as ** along with 2 people and 1 group lfriedl balajis kdl
  • Integrating 'omic' information: a bridge between genomics and systems biology.
    Trends Genet, Vol. 19, No. 10. (October 2003), pp. 551-560.
    by H Ge, AJ Walhout, M Vidal
    posted to data_integration genomics network_biology by grahamc on 2008-03-28 20:23:38 as ** along with 5 people and 1 group sanchezbuelna lfriedl wnpx biosv reidy kdl
  • Integrating interactome, phenome, and transcriptome mapping data for the C. elegans germline.
    Curr Biol, Vol. 12, No. 22. (19 November 2002), pp. 1952-1958.
    by AJ Walhout, J Reboul, O Shtanko, N Bertin, P Vaglio, H Ge, H Lee, L Doucette-Stamm, KC Gunsalus, AJ Schetter, DG Morton, KJ Kemphues, V Reinke, SK Kim, F Piano, M Vidal
    posted to data_integration interactions network_biology by grahamc on 2008-03-28 20:21:59 as **
  • Interrelating different types of genomic data, from proteome to secretome: 'oming in on function.
    Genome Res., Vol. 11, No. 9. (September 2001), pp. 1463-1468.
    by D Greenbaum, NM Luscombe, R Jansen, J Qian, M Gerstein
    posted to data_integration interactions network_biology protein-protein by grahamc on 2008-03-28 20:18:17 as **
  • NETWORK BIOLOGY: UNDERSTANDING THE CELL'S FUNCTIONAL ORGANIZATION
    Nat Rev Genet, Vol. 5, No. 2. (February 2004), pp. 101-113.
    by Albert-Laszlo Barabasi, Zoltan N Oltvai
    posted to evolution function_prediction network_biology protein_evolution by grahamc on 2008-03-28 20:08:04 as ** along with 9 people and 1 group okarsligil bayesian tny mmt mirzazadeh lpfernandes karfunkel vietanh0 nolodie Bioinformatics
  • The Importance of Bottlenecks in Protein Networks: Correlation with Gene Essentiality and Expression Dynamics
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 February 2007), e59.eor.
    by Haiyuan Yu, Philip M Kim, Emmett Sprecher, Valery Trifinov, Mark Gerstein
    posted to evolution interactions network_biology network_topology protein-protein by grahamc on 2008-03-28 20:06:47 as ** along with 3 people zwang Pao-Yang taiei688
  • Positive selection at the protein network periphery: Evaluation in terms of structural constraints and cellular context
    Proceedings of the National Academy of Sciences (12 December 2007), 0710183104.
    by Philip M Kim, Jan O Korbel, Mark B Gerstein
    posted to evolution network_biology selection by grahamc on 2008-03-28 20:05:37 as ** along with 6 people wilbur jyuh tmmurali cjeans mingzhi minostro
  • Relating three-dimensional structures to protein networks provides evolutionary insights.
    Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941.
    by PM Kim, LJ Lu, Y Xia, MB Gerstein
    posted to data_integration evolution interactions protein-protein by grahamc on 2008-03-28 20:04:42 as ** along with 17 people and 2 groups carlk saket paolomarcatili bicko lfriedl chad_davis Einat tny choonpeng timflutre ramensky massivemayhem efge lpfernandes cdeane Pao-Yang phoenixzxl structural_bioinformatics kdl
  • Relating whole-genome expression data with protein-protein interactions.
    Genome Res, Vol. 12, No. 1. (January 2002), pp. 37-46.
    by R Jansen, D Greenbaum, M Gerstein
    posted to data_integration expression interactions protein-protein by grahamc on 2008-03-28 20:03:18 as ** along with 8 people carlk paolomarcatili nedwards gurkanbebek gespim cjeans iris_2001 kintoki
  • Systems biology: a brief overview.
    Science, Vol. 295, No. 5560. (1 March 2002), pp. 1662-1664.
    by H Kitano
    posted to review systems_biology by grahamc on 2008-03-28 20:00:44 as ** along with 20 people and 6 groups nsamways edvin soramame_0518 lenov irenas Yanno Borelli wnpx biosv shivakumar3_14 dgront kehan cconboy mmt margaritis roland_ewald carmaus jdiezperezj maburkitt mertnuhoglu dbk-lab biodiversity_conservation Bioinformatics GrassBase dIEMoSIRIS MoSi-Rostock
  • Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae.
    Nat Genet, Vol. 29, No. 4. (December 2001), pp. 482-486.
    by H Ge, Z Liu, GM Church, M Vidal
    posted to data_integration interactions model_organisms network_biology translation yeast by grahamc on 2008-03-28 19:59:46 as ** along with 10 people and 1 group paolomarcatili roys BioGeek lfriedl wnpx mmt gespim bluto ruvido kintoki kdl
  • Getting connected: analysis and principles of biological networks.
    Genes Dev, Vol. 21, No. 9. (1 May 2007), pp. 1010-1024.
    by X Zhu, M Gerstein, M Snyder
    posted to interactions net network_biology network_statistics protein-protein by grahamc on 2008-03-28 19:57:55 as ** along with 9 people renatomilani carlk jfr balajis fishtank nedwards naegele Evangelia kristen
  • Understanding Network Concepts in Modules
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Jun Dong, Steve Horvath
    posted to network_biology network_properties network_statistics network_topology by grahamc on 2008-03-28 17:42:09 as ** along with 3 people and 1 group jfr kengg natstreet Bioinformatics
  • What is a gene, post-ENCODE? History and updated definition.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 669-681.
    by MB Gerstein, C Bruce, JS Rozowsky, D Zheng, J Du, JO Korbel, O Emanuelsson, ZD Zhang, S Weissman, M Snyder
    posted to encode_project evolution genomics by grahamc on 2008-03-28 17:38:16 as ** along with 25 people and 4 groups altotor tharris hpaces jyuh carolh12 eweaver dpollard balicea dchughes dullhunk madhadron cottrell egonw ghattem sujaikumar Garamonfok PunkRock jasonbobe PredictER cabbagezs Jporci kmdaily krokicki antonkratz Minty Bioinformatics EisenLab G4ID Genetics-of-Gambling
  • An encyclopaedia of interactions
    Nat Rev Mol Cell Biol, Vol. 8, No. 7. (July 2007), pp. 512-512.
    by Ekat Kritikou
    posted to interactions review by grahamc on 2008-03-28 17:37:26 as ** along with 1 person and 1 group paolomarcatili Bioinformatics
  • Genome Transplantation in Bacteria: Changing One Species to Another
    Science (28 June 2007), 1144622.
    by Carole Lartigue, John I Glass, Nina Alperovich, Rembert Pieper, Prashanth P Parmar, Hutchison, Hamilton O Smith, Craig J Venter
    posted to synthetic_biology by grahamc on 2008-03-28 17:32:16 as ** along with 8 people and 1 group jyuh operon madhadron yeastyboy zwang cabbagezs gulsacan westoll Bioinformatics
  • Key biology databases go wiki
    Nature, Vol. 445, No. 7129. (14 February 2007), pp. 691-691.
    by Jim Giles
    posted to no-tag by grahamc on 2008-03-28 17:31:16 as ** along with 9 people and 6 groups jyuh marcius eweaver kehan raiyar leechuck PunkRock barriot mircea biodiversity_conservation Bioinformatics BioinfoCIPF SGU-CIPF steinmetzlab GrassBase
  • The human disease network
    PNAS, Vol. 104, No. 21. (22 May 2007), pp. 8685-8690.
    by Kwang-Il Goh, Michael E Cusick, David Valle, Barton Childs, Marc Vidal, Albert-Laszlo Barabasi
    posted to disease human network_biology by grahamc on 2008-03-28 17:21:27 as ** along with 23 people and 8 groups shoshin carlk mingzhi Yanno jyuh aalibes cannin kuhn jfr yas balicea neveaire bundschu raiyar joepickrell leSyl henning dejori xingxu winterschlaefer naegele shikin nolodie GomezLab Biostatistics Computational-Genomics Bioinformatics Neuroscience steinmetzlab ic4 generif_paper
  • Genetics of global gene expression
    Nature Reviews Genetics, Vol. 7, No. 11., pp. 862-872.
    by Matthew V Rockman, Leonid Kruglyak
    posted to genomics review by grahamc on 2008-03-28 17:18:28 as ** along with 16 people and 10 groups jyuh dpollard tardigrade balicea dchughes nickluscombe neveaire aswin qfwills ealloza giovanni mlovell lp2 emarker natstreet mimulus_99 Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience G4ID EBI-regulation BioinfoCIPF GeschwindLab Genetics-of-Gambling
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