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eweavers library [308 articles]

Senaste artiklarna i eweavers bibliotek.
  • Use of simulated data sets to evaluate the fidelity of metagenomic processing methods - Nature Methods
    posted to no-tag by eweaver on 2007-11-13 06:25:52 as **
  • What is a gene, post-ENCODE? History and updated definition.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 669-681.
    by MB Gerstein, C Bruce, JS Rozowsky, D Zheng, J Du, JO Korbel, O Emanuelsson, ZD Zhang, S Weissman, M Snyder
    posted to no-tag by eweaver on 2007-09-16 08:22:38 as ** along with 26 people and 4 groups jyuh carolh12 dpollard balicea dchughes dullhunk madhadron cottrell grahamc egonw ghattem sujaikumar Garamonfok PunkRock jasonbobe PredictER cabbagezs Jporci kmdaily krokicki antonkratz Minty hpaces tharris altotor mjoach Bioinformatics EisenLab G4ID Genetics-of-Gambling
  • Indexing dataspaces
    (2007), pp. 43-54.
    by Xin Dong, Alon Halevy
    posted to no-tag by eweaver on 2007-09-04 06:50:33 as *** along with 6 people and 1 group bozhaouiuc jsenn egh lillejul tulaydemir vannevarvision L3S
  • The minimum information about a proteomics experiment (MIAPE)
    Nature Biotechnology, Vol. 25, No. 8. (08 August 2007), pp. 887-893.
    by Chris F Taylor, Norman W Paton, Kathryn S Lilley, Pierre-Alain Binz, Randall K Julian, Andrew R Jones, Weimin Zhu, Rolf Apweiler, Ruedi Aebersold, Eric W Deutsch, Michael J Dunn, Albert JR Heck, Alexander Leitner, Marcus Macht, Matthias Mann, Lennart Martens, Thomas A Neubert, Scott D Patterson, Peipei Ping, Sean L Seymour, Puneet Souda, Akira Tsugita, Joel Vandekerckhove, Thomas M Vondriska, Julian P Whitelegge, Marc R Wilkins, Ioannnis Xenarios, John R Yates, Henning Hermjakob
    posted to no-tag by eweaver on 2007-08-31 01:31:17 as ** along with 5 people and 1 group jyuh hpiwowar nedwards alanrw fgibson GelML
  • DarkHorse: a method for genome-wide prediction of horizontal gene transfer
    Genome Biology, Vol. 8 (02 February 2007), R16.
    by Sheila Podell, Terry Gaasterland
    posted to bacteria prediction transfer by eweaver on 2007-07-27 03:40:09 as *** along with 2 people operon karfunkel
  • A reductionist's systems biology: opinion.
    Curr Opin Cell Biol, Vol. 17, No. 1. (February 2005), pp. 9-11.
    by PK Sorger
    posted to no-tag by eweaver on 2007-03-31 14:11:30 as **** along with 4 people and 2 groups alexg jaycopeland cdppublications jyuh SorgerLab CDP
  • A Bioinformatics Perspective on Proteomics: Data Storage, Analysis, and Integration
    Bioscience Reports, Vol. 25, No. 1-2. (February 2005), pp. 95-106.
    by Andreas Kremer, Reinhard Schneider, Georg Terstappen
    posted to no-tag by eweaver on 2007-03-29 00:45:29 as ** along with 3 people and 1 group agileproteomics pgan fgibson GelML
  • Understanding the computational methodologies of systems biology
    Brief Bioinform, Vol. 7, No. 4. (1 December 2006), pp. 315-317.
    by Werner Dubitzky
    posted to no-tag by eweaver on 2007-03-26 22:11:55 as *****
  • CAMERA: A Community Resource for Metagenomics
    PLoS Biology, Vol. 5, No. 3. (1 March 2007), e75.
    by Rekha Seshadri, Saul A Kravitz, Larry Smarr, Paul Gilna, Marvin Frazier
    posted to no-tag by eweaver on 2007-03-16 21:22:08 as ** along with 3 people and 1 group jdelcampo beatrizfernandez AlexanderPico Microbial-Ecology
  • Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences.
    Bioinformatics, Vol. 22, No. 13. (1 July 2006), pp. 1658-1659.
    by W Li, A Godzik
    posted to no-tag by eweaver on 2007-03-16 21:10:26 as **** along with 4 people and 2 groups jyuh indigoviolet caporaso gisle EisenLab biomedical-nlp
  • BIRCH: A user-oriented, locally-customizable, bioinformatics system
    BMC Bioinformatics, Vol. 8 (09 February 2007), 54.
    by Brian Fristensky
    posted to no-tag by eweaver on 2007-03-15 16:16:39 as ***** along with 2 people druvus jyuh
  • Open source tools and toolkits for bioinformatics: significance, and where are we?
    Brief Bioinform, Vol. 7, No. 3. (September 2006), pp. 287-296.
    by JE Stajich, H Lapp
    posted to no-tag by eweaver on 2007-03-11 19:20:34 as ***** along with 7 people and 2 groups Ayest yas indigoviolet moborg dgront stajich george_g EisenLab T_lab
  • KDE Bioscience: Platform for bioinformatics analysis workflows
    Journal of Biomedical Informatics, Vol. 39, No. 4. (August 2006), pp. 440-450.
    by Qiang Lu, Pei Hao, Vasa Curcin, Weizhong He, Yuan-Yuan Li, Qing-Ming Luo, Yi-Ke Guo, Yi-Xue Li
    posted to no-tag by eweaver on 2007-03-06 17:00:51 as * along with 1 person and 3 groups dalloliogm Web2 splicing yeast
  • Multiple structural alignment and clustering of RNA sequences.
    Bioinformatics (25 February 2007)
    by Elfar Torarinsson, Jakob H H Havgaard, Jan Gorodkin
    posted to no-tag by eweaver on 2007-03-01 16:56:53 as ** along with 7 people and 2 groups marcius eckart_bindewald ppgardne ilh zwang dunnp zhouyu BioinfoCIPF SGU-CIPF
  • notes The outcomes of pathway database computations depend on pathway ontology
    Nucl. Acids Res., Vol. 34, No. 13. (7 August 2006), pp. 3687-3697.
    by ML Green, PD Karp
    posted to no-tag by eweaver on 2007-02-27 10:44:28 as ***** along with 1 person and 1 group kuhn Bioinformatics
  • notes Systematic assignment of thermodynamic constraints in metabolic networks models
    BMC Bioinformatics, Vol. 7 (23 November 2006), 512.
    by Anne Kummel, Sven Panke, Matthias Heinemann
    posted to no-tag by eweaver on 2007-02-27 10:36:58 as * along with 3 people tny aswin JeremyZucker
  • notes Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms.
    Bioinformatics, Vol. 19, No. 2. (22 January 2003), pp. 270-277.
    by H Ma, AP Zeng
    posted to no-tag by eweaver on 2007-02-27 10:27:12 as ***** along with 3 people kuhn tny yoh
  • notes Enzyme-specific profiles for genome annotation: PRIAM.
    Nucleic Acids Res, Vol. 31, No. 22. (15 November 2003), pp. 6633-6639.
    by C Claudel-Renard, C Chevalet, T Faraut, D Kahn
    posted to no-tag by eweaver on 2007-02-26 10:43:23 as **** along with 5 people and 1 group labedan Ayest JeremyZucker gelack shung MetabolicModeling
  • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
    Nucleic Acids Res, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402.
    by SF Altschul, TL Madden, AA Schäffer, J Zhang, Z Zhang, W Miller, DJ Lipman
    posted to no-tag by eweaver on 2007-02-26 10:41:12 as * along with 46 people and 4 groups pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita leelarcombe CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 mijam grottenolm bandrewfox edvin newton1234 mariakmejia granujilla marti CharlesM EisenLab biomedical-nlp Microbial-Ecology Plantandetc
  • Profile hidden Markov models.
    Bioinformatics, Vol. 14, No. 9. (1998), pp. 755-763.
    by SR Eddy
    posted to no-tag by eweaver on 2007-02-26 10:40:40 as * along with 9 people miguel chad_davis dgront rabio cjeans suizan nklee yoanjacquemin ca3295
  • BioWarehouse: a bioinformatics database warehouse toolkit
    BMC Bioinformatics, Vol. 7, No. 1. (2006)
    by Thomas Lee, Yannick Pouliot, Valerie Wagner, Priyanka Gupta, David S Calvert, Jessica Tenenbaum, Peter Karp
    posted to no-tag by eweaver on 2007-02-26 10:21:38 as ***** along with 2 people mircea Simplicity
  • Bioclipse: An open source workbench for chemo- and bioinformatics
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Ola Spjuth, Tobias Helmus, Egon Willighagen, Stefan Kuhn, Martin Eklund, Johannes Wagener, Peter M Rust, Christoph Steinbeck, Jarl Wikberg
    posted to no-tag by eweaver on 2007-02-22 16:45:53 as ** along with 9 people and 3 groups nicklynch moborg dullhunk kehan fisherp egonw sci91078 jyuh alanrw biodiversity_conservation Bioinformatics GrassBase
  • Combining One-Class Classifiers for Robust Novelty Detection in Gene Expression Data
    : Advances in Bioinformatics and Computational Biology (2005), pp. 54-64.
    by Eduardo J Spinosa, Andrã© CPLF de Carvalho
    posted to no-tag by eweaver on 2007-02-16 18:53:57 as * along with 1 person sdvillal
  • notes The Pathway Tools software.
    Bioinformatics, Vol. 18 Suppl 1 (2002)
    by PD Karp, S Paley, P Romero
    posted to no-tag by eweaver on 2007-02-16 01:11:13 as ***** along with 2 people shung JeremyZucker
  • IdentiCS--identification of coding sequence and in silico reconstruction of the metabolic network directly from unannotated low-coverage bacterial genome sequence.
    BMC Bioinformatics, Vol. 5 (16 August 2004)
    by J Sun, AP Zeng
    posted to no-tag by eweaver on 2007-02-15 18:51:13 as ***** along with 1 person operon
  • metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella
    Nucleic Acids Research, Vol. 33, No. 4., pp. 1399-1409.
    by W Pinney, W Shirley, A Mcconkey, R Westhead
    posted to no-tag by eweaver on 2007-02-15 18:51:01 as ***** along with 4 people and 2 groups jmeppley bsmagic shung hryk Bioinformatics bioinplant
  • Mining literature for systems biology
    Briefings in Bioinformatics
    by Roberts
    posted to no-tag by eweaver on 2007-02-15 17:56:25 as **
  • Protein classification using ontology classification
    by K Wolstencroft
    posted to no-tag by eweaver on 2007-02-15 17:55:35 as ****
  • Towards multidimensional genome annotation
    Nature Reviews Genetics, Vol. 7, No. 2., pp. 130-141.
    by Jennifer L Reed, Iman Famili, Ines Thiele, Bernhard O Palsson
    posted to no-tag by eweaver on 2007-02-15 17:51:31 as **** along with 11 people and 4 groups druvus jyuh jfr balajis dchughes cmm raiyar massivemayhem wenhan zwang lylu FAB-lab G4ID steinmetzlab Genetics-of-Gambling
  • Accelerating the reconstruction of genome-scale metabolic networks
    BMC Bioinformatics, Vol. 7 (13 June 2006), 296.
    by Richard A Notebaart, Frank HJ van Enckevort, Christof Francke, Roland J Siezen, Bas Teusink
    posted to no-tag by eweaver on 2007-02-15 17:49:47 as ***** along with 2 people and 1 group JeremyZucker shung MetabolicModeling
  • An Open Forum for Computational Biology
    PLoS Computational Biology, Vol. 1, No. 1. (1 June 2005), e5.
    by Michael Gribskov
    posted to no-tag by eweaver on 2007-02-15 17:48:47 as ** along with 1 person and 1 group dolhuis SNE
  • Key biology databases go wiki
    Nature, Vol. 445, No. 7129. (14 February 2007), pp. 691-691.
    by Jim Giles
    posted to no-tag by eweaver on 2007-02-15 17:48:32 as ** along with 10 people and 6 groups druvus jyuh marcius kehan raiyar grahamc leechuck PunkRock barriot mircea biodiversity_conservation Bioinformatics BioinfoCIPF SGU-CIPF steinmetzlab GrassBase
  • Web Service Mining for Biological Pathway Discovery
    : Data Integration in the Life Sciences (2005), pp. 292-295.
    by George Zheng, Athman Bouguettaya
    posted to no-tag by eweaver on 2007-02-15 17:45:23 as **
  • Data merging for integrated microarray and proteomic analysis
    Briefings in Functional Genomics and Proteomics
    by Waters
    posted to no-tag by eweaver on 2007-02-15 17:42:23 as **
  • From genomics to chemical genomics: new developments in KEGG.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by M Kanehisa, S Goto, M Hattori, KF Aoki-Kinoshita, M Itoh, S Kawashima, T Katayama, M Araki, M Hirakawa
    posted to db kegg pathway_general by eweaver on 2007-02-15 17:34:01 as **** along with 14 people namunet jyuh aalibes kuhn balajis alexg tny dullhunk michC frohike incovoma sgoetz yggdrasil natstreet
  • Development And Assessment Of Machine Learning Attributes For Ortholog Detection
    (June 2006)
    by Ying Lin
    posted to applied_analysis by eweaver on 2007-02-09 05:12:32 as ****
  • Hierarchical Wrapper Induction for Semistructured Information Sources
    Autonomous Agents and Multi-Agent Systems, Vol. 4, No. 1/2. (2001), pp. 93-114.
    by Ion Muslea, Steven Minton, Craig A Knoblock
    posted to data_extraction by eweaver on 2006-09-18 01:06:44 as ** along with 4 people and 1 group camster arsyed scis0000001 gridinoc dbk-lab
  • Integrating biological databases
    Nat Rev Genet, Vol. 4, No. 5. (May 2003), pp. 337-345.
    by Lincoln D Stein
    posted to db by eweaver on 2006-05-12 02:19:01 as *** along with 9 people neilernst vaija laszlo8 hpiwowar fisherp lei cjeans angelika12 rvosa
  • Integration of biological sources: current systems and challenges ahead
    SIGMOD Rec., Vol. 33, No. 3. (September 2004), pp. 51-60.
    by Thomas Hernandez, Subbarao Kambhampati
    posted to db by eweaver on 2006-05-12 02:18:51 as *** along with 3 people neilernst lei angelika12
  • Database management for life sciences research
    SIGMOD Rec., Vol. 33, No. 2. (June 2004), pp. 15-20.
    by HV Jagadish, Frank Olken
    posted to db by eweaver on 2006-05-12 02:18:19 as *** along with 5 people and 1 group neilernst nearora wnpx lei jmuhlich SorgerLab
  • Modeling biological systems: a unified approach
    SIGSOFT Softw. Eng. Notes, Vol. 30, No. 5. (September 2005), pp. 1-4.
    by Manuj Darbari, Vipin Saxena
    posted to software by eweaver on 2006-05-12 02:18:00 as ***** along with 3 people neilernst wnpx mmt
  • Automated discovery of 3D motifs for protein function annotation
    Bioinformatics, Vol. 22, No. 6. (15 March 2006), pp. 723-730.
    by Benjamin J Polacco, Patricia C Babbitt
    posted to protein_structure by eweaver on 2006-04-27 15:31:58 as * along with 2 people and 2 groups marcius rabio BioinfoCIPF SGU-CIPF
  • Functional cartography of complex metabolic networks
    Nature, Vol. 433, No. 7028. (24 February 2005), pp. 895-900.
    by Roger Guimera, LAN Luis
    posted to pathway_general by eweaver on 2006-04-27 15:31:46 as **** along with 17 people and 4 groups pdelosri cswinburne camster dbk BioGeek Borelli lfriedl balajis alexg tny wnpx cjeans kdang carlk RobMills Diego_Prada marcio streptomyces dbk-lab kdl Bioinformatics
  • Metabolic pathways in the post-genome era
    Trends in Biochemical Sciences, Vol. 28, No. 5. (May 2003), pp. 250-258.
    by Jason A Papin, Nathan D Price, Sharon J Wiback, David A Fell, Bernhard O Palsson
    posted to pathway_general by eweaver on 2006-04-27 15:31:33 as **** along with 1 person tny
  • Proteomics to study genes and genomes
    Nature, Vol. 405, No. 6788. (15 June 2000), pp. 837-846.
    by Akhilesh Pandey, Matthias Mann
    posted to proteomics by eweaver on 2006-04-27 15:30:30 as * along with 4 people and 1 group jmeppley fisherp Jporci fgibson GelML
  • A comparative study of machine-learning methods to predict the effects of single nucleotide polymorphisms on protein function.
    Bioinformatics, Vol. 19, No. 17. (22 November 2003), pp. 2199-2209.
    by VG Krishnan, DR Westhead
    posted to machine_learning by eweaver on 2006-04-27 15:30:17 as * along with 5 people and 3 groups chrn marcius caporaso rlhsiao rsantana biomedical-nlp BioinfoCIPF SGU-CIPF
  • Membrane proteins: the 'Wild West' of structural biology.
    Trends Biochem Sci, Vol. 28, No. 3. (March 2003), pp. 137-144.
    by J Torres, TJ Stevens, M Samsó
    posted to proteomics by eweaver on 2006-04-03 15:08:46 as ** along with 2 people and 2 groups marcius rsantana BioinfoCIPF SGU-CIPF
  • It's a Small RNA World, After All
    Science, Vol. 309, No. 5740. (02 September 2005), pp. 1525-1526.
    by Matthew W Vaughn, Rob Martienssen
    posted to rna by eweaver on 2006-04-03 15:08:32 as ** along with 2 people and 2 groups dayjm marcius BioinfoCIPF SGU-CIPF
  • Beyond the proteome: non-coding regulatory RNAs.
    Genome Biol, Vol. 3, No. 5. (2002)
    by M Szymański, J Barciszewski
    posted to rna by eweaver on 2006-04-03 15:08:29 as ** along with 2 people and 3 groups marcius cdawson BioinfoCIPF SGU-CIPF GIG
  • Experimental approaches to identify non-coding RNAs.
    Nucleic Acids Res, Vol. 34, No. 2. (2006), pp. 635-646.
    by A Hüttenhofer, J Vogel
    posted to rna by eweaver on 2006-04-03 15:08:24 as ** along with 7 people and 7 groups marcius perrywoo dchughes tabu mtagaya cdawson bsmagic Bioinformatics G4ID BioinfoCIPF bioinplant SGU-CIPF GIG Genetics-of-Gambling
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