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emptyhbs library [156 articles]

Senaste artiklarna i emptyhbs bibliotek.
  • Functional Architecture and Evolution of Transcriptional Elements That Drive Gene Coexpression
    Science, Vol. 317, No. 5844. (14 September 2007), pp. 1557-1560.
    by Christopher D Brown, David S Johnson, Arend Sidow
    posted to transcriptional_regulation cis_regulatory_evolution by emptyhb on 2008-07-04 17:41:06 as ** along with 9 people and 2 groups dpollard djkt joepickrell zwang Garamonfok Stew mimulus_99 maximilianh cisevol EisenLab cis-regulatory-evolution
  • Coordination of a Transcriptional Switch by HMGI(Y) Acetylation
    Science, Vol. 293, No. 5532. (10 August 2001), pp. 1133-1136.
    by Nikhil Munshi, Theodora Agalioti, Stavros Lomvardas, Menie Merika, Guoying Chen, Dimitris Thanos
    posted to transcriptional_regulation dna-protein_interaction cis_regulatory_evolution by emptyhb on 2008-07-03 23:30:10 as **
  • An Atomic Model of the Interferon-[beta] Enhanceosome
    Cell, Vol. 129, No. 6. (15 June 2007), pp. 1111-1123.
    by Daniel Panne, Tom Maniatis, Stephen C Harrison
    posted to transcriptional_regulation dna-protein_interaction cis_regulatory_evolution by emptyhb on 2008-07-03 23:26:56 as **
  • Information display by transcriptional enhancers
    Development, Vol. 130, No. 26. (29 December 2003), pp. 6569-6575.
    by Meghana M Kulkarni, David N Arnosti
    posted to transcriptional_regulation even-skipped_enhancer drosophila by emptyhb on 2008-07-02 22:44:25 as **
  • Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106.
    by Emily E Hare, Brant K Peterson, Venky N Iyer, Rudolf Meier, Michael B Eisen
    posted to function_study even-skipped_enhancer cis_regulatory_evolution binding_sites_turnover by emptyhb on 2008-07-02 21:31:18 as ** along with 5 people and 2 groups pradiptaray cisevol caseybrown stajich djkt cis-regulatory-evolution Berkeley Mycology
  • A matter of timing: microRNA-controlled temporal identities in worms and flies
    Genes Dev., Vol. 22, No. 12. (15 June 2008), pp. 1572-1576.
    by Manfred Frasch
    posted to transcriptional_regulation mirna by emptyhb on 2008-06-29 20:01:30 as ** along with 1 person balicea
  • Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1643-1647.
    by Rickard Sandberg, Joel R Neilson, Arup Sarma, Phillip A Sharp, Christopher B Burge
    posted to transcriptional_regulation mirna by emptyhb on 2008-06-29 19:31:58 as ** along with 4 people dchughes bootsy lisa1 djkt
  • Explicit equilibrium modeling of transcription-factor binding and gene regulation.
    Genome biology, Vol. 6, No. 10. (2005)
    by JA Granek, ND Clarke
    posted to transcriptional_regulation by emptyhb on 2008-06-29 03:17:40 as **
  • A mutation accumulation assay reveals a broad capacity for rapid evolution of gene expression
    Nature, Vol. 438, No. 7065., pp. 220-223.
    by Scott A Rifkin, David Houle, Junhyong Kim, Kevin P White
    posted to noiserobustness expression by emptyhb on 2008-06-28 19:50:04 as ** along with 8 people and 1 group dayjm indigoviolet dpollard adepace johncumbers djkt mimulus_99 caseybrown EisenLab
  • The genomic and epidemiological dynamics of human influenza A virus
    Nature (16 April 2008)
    by Andrew Rambaut, Oliver G Pybus, Martha I Nelson, Cecile Viboud, Jeffery K Taubenberger, Edward C Holmes
    posted to natural_selection by emptyhb on 2008-06-23 19:06:55 as ** along with 2 people smbe2008 friendpine
  • A Test of the Null Model for 5' UTR Evolution Based on GC Content
    Mol Biol Evol, Vol. 25, No. 5. (1 May 2008), pp. 801-804.
    by Max Reuter, Jan Engelstadter, Pierre Fontanillas, Laurence D Hurst
    posted to cis_regulatory_evolution by emptyhb on 2008-06-04 00:33:22 as ** along with 1 person djkt
  • The evolution of transcription-initiation sites.
    Mol Biol Evol, Vol. 22, No. 4. (April 2005), pp. 1137-1146.
    by M Lynch, DG Scofield, X Hong
    posted to transcriptional_regulation cis_regulatory_evolution by emptyhb on 2008-06-04 00:30:07 as ** along with 1 person madhadron
  • The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans
    Nature Genetics, Vol. 37, No. 5. (24 April 2005), pp. 544-548.
    by Dee R Denver, Krystalynne Morris, Todd T Streelman, Stuart K Kim, Michael Lynch, Kelley K Thomas
    posted to transcriptional_regulation natural_selection cis_regulatory_evolution by emptyhb on 2008-06-04 00:29:45 as ** along with 2 people rklancer mimulus_99
  • The effect of recombination on the neutral evolution of genetic robustness
    Mathematical Biosciences, Vol. In Press, Corrected Proof
    by Gergely J Szöllosi, Imre Derényi
    posted to population_genetics_modeling noiserobustness by emptyhb on 2008-05-27 01:42:55 as **
  • Interference among deleterious mutations favours sex and recombination in finite populations
    Nature, Vol. 443, No. 7107., pp. 89-92.
    by Peter D Keightley, Sarah P Otto
    posted to sex_recombination by emptyhb on 2008-05-25 20:00:01 as ** along with 1 person treangen
  • Two strategies for gene regulation by promoter nucleosomes
    Genome Res. (30 April 2008), gr.076059.108.
    by Itay Tirosh, Naama Barkai
    posted to transcriptional_regulation epigenetics by emptyhb on 2008-05-22 06:43:50 as ** along with 7 people dchughes aalibes djkt fpattyn vega roys nklee
  • Genes that control dorsoventral polarity affect gene expression along the anteroposterior axis of the Drosophila embryo.
    Development (Cambridge, England), Vol. 99, No. 3. (March 1987), pp. 327-332.
    by SB Carroll, GM Winslow, VJ Twombly, MP Scott
    posted to pattern_formation drosophila cis_regulatory_elements by emptyhb on 2008-05-20 15:48:30 as **
  • Evolutionary developmental biology and the problem of variation.
    Evolution Int J Org Evolution, Vol. 54, No. 4. (August 2000), pp. 1079-1091.
    by DL Stern
    posted to review phenotype natural_selection cis_regulatory_evolution by emptyhb on 2008-05-19 15:57:15 as ** along with 1 person and 1 group stevanspringer FAB-lab
  • Regulation of even-skipped stripe 2 in the Drosophila embryo.
    The EMBO journal, Vol. 11, No. 11. (November 1992), pp. 4047-4057.
    by S Small, A Blair, M Levine
    posted to transcriptional_regulation even-skipped_enhancer drosophila by emptyhb on 2008-05-16 01:07:25 as ** along with 1 person brant
  • Levers and fulcrums: progress in cis-regulatory motif models
    Nature Methods, Vol. 5, No. 4., pp. 297-298.
    by Ewan Birney
    posted to modeling_gene_network cis_regulatory_elements by emptyhb on 2008-05-16 00:34:33 as ** along with 3 people and 2 groups isimpson pradiptaray stajich EisenLab Berkeley Mycology
  • Evolution of alternative transcriptional circuits with identical logic
    Nature, Vol. 443, No. 7110. (2006), pp. 415-420.
    by Annie E Tsong, Brian B Tuch, Hao Li, Alexander D Johnson
    posted to transcriptional_regulation cis_regulatory_evolution by emptyhb on 2008-05-14 20:24:06 as ** along with 6 people and 4 groups marcius brant adepace aswin srfairclough cisevol EisenLab BioinfoCIPF SGU-CIPF cis-regulatory-evolution
  • Cannot Earthquakes Be Predicted?
    Science, Vol. 278, No. 5337. (17 October 1997), pp. 487-490.
    by Max Wyss;, Richard L Aceves, Stephen K Park;, Robert J Geller, David D Jackson, Yan Y Kagan, Francesco Mulargia;
    posted to earth_quake by emptyhb on 2008-05-14 06:19:00 as **
  • Earthquakes Cannot Be Predicted
    Science, Vol. 275, No. 5306. (14 March 1997), pp. 1616-0.
    by Robert J Geller, David D Jackson, Yan Y Kagan, Francesco Mulargia
    posted to earth_quake by emptyhb on 2008-05-14 06:17:42 as **
  • From the Cover: Emergence of tempered preferential attachment from optimization
    Proceedings of the National Academy of Sciences, Vol. 104, No. 15. (10 April 2007), pp. 6112-6117.
    by Raissa M D'Souza, Christian Borgs, Jennifer T Chayes, Noam Berger, Robert D Kleinberg
    posted to earth_quake by emptyhb on 2008-05-14 06:17:01 as ** along with 1 person dpf
  • Under cover: causes, effects and implications of Hsp90-mediated genetic capacitance.
    Bioessays, Vol. 26, No. 4. (April 2004), pp. 348-362.
    by TA Sangster, S Lindquist, C Queitsch
    posted to genetic_buffering by emptyhb on 2008-05-11 16:16:01 as ** along with 2 people rklancer pat
  • Hsp90 as a capacitor for morphological evolution
    Nature, Vol. 396, No. 6709. (26 November 1998), pp. 336-342.
    by Suzanne L Rutherford, Susan Lindquist
    posted to genetic_buffering by emptyhb on 2008-05-11 15:58:43 as ** along with 2 people Ema natstreet
  • Evidence for an epigenetic mechanism by which Hsp90 acts as a capacitor for morphological evolution
    Nat Genet, Vol. 33, No. 1. (January 2003), pp. 70-74.
    by Vincent Sollars, Xiangyi Lu, Li Xiao, Xiaoyan Wang, Mark D Garfinkel, Douglas M Ruden
    posted to genetic_buffering by emptyhb on 2008-05-11 15:47:47 as ** along with 2 people Ema epigenetics
  • Hsp90 as a capacitor of phenotypic variation.
    Nature, Vol. 417, No. 6889. (6 June 2002), pp. 618-624.
    by C Queitsch, TA Sangster, S Lindquist
    posted to genetic_buffering by emptyhb on 2008-05-11 15:44:55 as **
  • Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments
    BMC Bioinformatics, Vol. 7 (14 August 2006), 376.
    by Daniel A Pollard, Alan M Moses, Venky N Iyer, Michael B Eisen
    posted to cis_regulatory_evolution by emptyhb on 2008-05-10 22:02:25 as ** along with 6 people and 2 groups aprasad dpollard lusk Garamonfok lilou cisevol EisenLab cis-regulatory-evolution
  • Expression evolution in yeast genes of single-input modules is mainly due to changes in trans-acting factors.
    Genome Res (5 July 2007)
    by Daryi Wang, Huang-Mo M Sung, Tzi-Yuan Y Wang, Chih-Jen J Huang, Peggy Yang, Tiffany Chang, Yang-Chao C Wang, Da-Lun L Tseng, Jen-Pey P Wu, Tso-Ching C Lee, Ming-Che C Shih, Wen-Hsiung H Li
    posted to transcriptional_regulation expression by emptyhb on 2008-05-10 21:56:58 as ** along with 4 people and 3 groups dpollard jwestbrook emarker cisevol EisenLab King_Lab cis-regulatory-evolution
  • Large-scale turnover of functional transcription factor binding sites in Drosophila.
    PLoS Comput Biol, Vol. 2, No. 10. (October 2006)
    by AM Moses, DA Pollard, DA Nix, VN Iyer, XY Li, MD Biggin, MB Eisen
    posted to in-vivo_binding_sites drosophila cis_regulatory_evolution binding_sites_turnover by emptyhb on 2008-05-07 16:22:30 as ** along with 5 people and 2 groups adepace eukfn lusk maximilianh cisevol EisenLab cis-regulatory-evolution
  • Position specific variation in the rate of evolution in transcription factor binding sites.
    BMC Evol Biol, Vol. 3, No. 1. (28 August 2003)
    by AM Moses, DY Chiang, M Kellis, ES Lander, MB Eisen
    posted to detecting_selection cis_regulatory_evolution by emptyhb on 2008-05-06 23:31:33 as ** along with 6 people and 2 groups briann dpollard adepace lusk nklee cisevol EisenLab cis-regulatory-evolution
  • Sequence turnover and tandem repeats in cis-regulatory modules in drosophila.
    Mol Biol Evol, Vol. 22, No. 4. (April 2005), pp. 874-885.
    by S Sinha, ED Siggia
    posted to drosophila cis_regulatory_evolution by emptyhb on 2008-05-06 21:33:36 as ** along with 2 people and 1 group operon cisevol cis-regulatory-evolution
  • Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA.
    Genetics, Vol. 139, No. 2. (February 1995), pp. 1067-1076.
    by H Akashi
    posted to drosophila detecting_selection by emptyhb on 2008-05-05 14:50:59 as **
  • Gene Regulation in the Third Dimension
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1793-1794.
    by Job Dekker
    posted to transcriptional_regulation by emptyhb on 2008-05-04 21:35:40 as ** along with 8 people and 1 group operon AbnerCYH ealloza biomcgary sunhwan dlobo lambda Haze GEB
  • Evolution of cis-regulatory sequence and function in Diptera
    Heredity, Vol. aop, No. current.
    by PJ Wittkopp,
    posted to review cis_regulatory_evolution by emptyhb on 2008-05-04 03:12:00 as ** along with 5 people and 2 groups indigoviolet dpollard adepace emmahe cisevol EisenLab cis-regulatory-evolution
  • The Evolution of Transcriptional Regulation in Eukaryotes
    Mol Biol Evol, Vol. 20, No. 9. (1 September 2003), pp. 1377-1419.
    by Gregory A Wray, Matthew W Hahn, Ehab Abouheif, James P Balhoff, Margaret Pizer, Matthew V Rockman, Laura A Romano
    posted to transcriptional_regulation review cis_regulatory_evolution by emptyhb on 2008-05-04 02:31:57 as ** along with 7 people and 5 groups ana dpollard adepace nickluscombe anatiferous mimulus_99 cisevol structural_bioinformatics Bioinformatics EisenLab EBI-regulation cis-regulatory-evolution
  • The evolutionary significance of cis-regulatory mutations
    Nature Reviews Genetics, Vol. 8, No. 3., pp. 206-216.
    by Gregory A Wray
    posted to review cis_regulatory_evolution by emptyhb on 2008-05-04 02:30:59 as ** along with 6 people and 4 groups brant dpollard dchughes lusk mimulus_99 cisevol EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Chromatin decouples promoter threshold from dynamic range
    Nature (16 April 2008)
    by Felix H Lam, David J Steger, Erin K O’shea
    posted to transcriptional_regulation experimental_method epigenetics basic_cell_machinary by emptyhb on 2008-05-03 15:36:45 as ** along with 1 person jjray
  • Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale
    Nature Genetics, Vol. 38, No. 12. (05 November 2006), pp. 1406-1412.
    by Christopher D Herring, Anu Raghunathan, Christiane Honisch, Trina Patel, Kenyon M Applebee, Andrew R Joyce, Thomas J Albert, Frederick R Blattner, Dirk van den Boom, Charles R Cantor, Bernhard
    posted to natural_selection by emptyhb on 2008-05-02 21:47:45 as ** along with 2 people alexl dylan77
  • Molecular drive: a cohesive mode of species evolution
    Nature, Vol. 299, No. 5879. (1982), pp. 111-117.
    by Gabriel Dover
    posted to natural_selection molecular_evolution by emptyhb on 2008-05-02 15:40:55 as **
  • Functional characterization of variations on regulatory motifs.
    PLoS genetics, Vol. 4, No. 3. (March 2008)
    by L Michal, O Mizrahi-Man, Y Pilpel
    posted to transcriptional_regulation modeling_gene_network by emptyhb on 2008-05-02 04:10:47 as ** along with 1 person ihpark
  • Population Genetics of Polymorphism and Divergence
    Genetics, Vol. 132, No. 4. (1 December 1992), pp. 1161-1176.
    by SA Sawyer, DL Hartl
    posted to population_genetics_modeling by emptyhb on 2008-05-01 00:41:23 as ** along with 3 people pradiptaray bpb djkt
  • Possibility of extensive neutral evolution under stabilizing selection with special reference to nonrandom usage of synonymous codons.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 78, No. 9. (September 1981), pp. 5773-5777.
    by M Kimura
    posted to population_genetics_modeling cis_regulatory_evolution by emptyhb on 2008-05-01 00:22:32 as **
  • Evolutionary population genetics of promoters: Predicting binding sites and functional phylogenies.
    Proc Natl Acad Sci U S A, Vol. 102, No. 44. (1 November 2005), pp. 15936-15941.
    by V Mustonen, M Lässig
    posted to statistical_method population_genetics_modeling cis_regulatory_evolution by emptyhb on 2008-05-01 00:12:23 as ** along with 4 people and 2 groups kaarsinogen dpollard lusk cisevol EisenLab cis-regulatory-evolution
  • Evolutionary analysis of the well characterized endo16 promoter reveals substantial variation within functional sites.
    Proc Natl Acad Sci U S A, Vol. 102, No. 24. (14 June 2005), pp. 8591-8596.
    by JP Balhoff, GA Wray
    posted to cis_regulatory_evolution by emptyhb on 2008-04-30 21:38:36 as ** along with 2 people and 2 groups adepace cisevol EisenLab cis-regulatory-evolution
  • Shape and function of the Bicoid morphogen gradient in dipteran species with different sized embryos.
    Dev Biol (13 February 2008)
    by Thomas Gregor, Alistair P P McGregor, Eric F F Wieschaus
    posted to trans_elements drosophila cis_regulatory_evolution by emptyhb on 2008-04-30 02:30:46 as ** along with 1 person lusk
  • Functional Evolution of a cis-Regulatory Module
    PLoS Biology, Vol. 3, No. 4. (1 April 2005), e93.
    by Michael Z Ludwig, Arnar Palsson, Elena Alekseeva, Casey M Bergman, Janaki Nathan, Martin Kreitman
    posted to function_study even-skipped_enhancer drosophila cis_regulatory_evolution by emptyhb on 2008-04-28 03:07:14 as ** along with 4 people and 3 groups brant mimulus_99 blobbybirdman cisevol UH - Computational Biology cis-regulatory-evolution Myxo group
  • Evolutionary plasticity of genetic interaction networks
    Nat Genet, Vol. 40, No. 4. (April 2008), pp. 390-391.
    by Julia Tischler, Ben Lehner, Andrew G Fraser
    posted to news by emptyhb on 2008-04-24 05:53:33 as ** along with 4 people and 1 group zwang caseybrown smgomez ptrobajo GomezLab
  • Delivery codes for fly transgenics
    Nature Genetics, Vol. 40, No. 4., pp. 383-384.
    by Thomas C Tubon, Jerry CP Yin
    posted to experimental_method drosophila by emptyhb on 2008-04-24 05:50:56 as **
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