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dragonrezs library [311 articles]

Senaste artiklarna i dragonrezs bibliotek ordnat efter prioritet.
  • A systems biology approach for pathway level analysis
    Genome Res. (4 September 2007), gr.6202607.
    by Sorin Draghici, Purvesh Khatri, Adi L Tarca, Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero
    posted to pathway_expansion pathway_perturbation by dragonrez on 2007-12-10 23:26:41 as ***** along with 16 people and 3 groups pengchy tmmurali jfr gurkanbebek grahamc shigepong zwang cabbagezs cerami xingxu shikin idonaldson Pao-Yang thomaskelder heliopais AlexanderPico Bioinformatics ParkinsonLab_at_MaRS OPIG
  • A data integration methodology for systems biology.
    Proc Natl Acad Sci U S A (21 November 2005)
    by Daehee Hwang, Alistair G G Rust, Stephen Ramsey, Jennifer J J Smith, Deena M M Leslie, Andrea D D Weston, Pedro de Atauri, John D D Aitchison, Leroy Hood, Andrew F F Siegel, Hamid Bolouri
    posted to no-tag by dragonrez on 2007-01-30 22:51:41 as ***** along with 17 people and 3 groups brian tmmurali okarsligil jfr lfriedl Schmidtc eweaver wnpx biosv Sharpshoot noano mbeautru reidy grahamc GeeSharpMinor nedwards athleem kdl Bioinformatics JJJ
  • From the Cover: Conserved patterns of protein interaction in multiple species.
    Proc Natl Acad Sci U S A, Vol. 102, No. 6. (8 February 2005), pp. 1974-1979.
    by R Sharan, S Suthram, RM Kelley, T Kuhn, S Mccuine, P Uetz, T Sittler, RM Karp, T Ideker
    posted to no-tag by dragonrez on 2005-06-13 00:13:34 as ***** along with 13 people and 2 groups tharris jiny sza okarsligil balajis nuke2005 maryee gurkanbebek koller cjeans iris_2001 maralena mdstobbe C. elegans / WormBase Bioinformatics
  • The maximum edge biclique problem is NP-complete
    Discrete Appl. Math., Vol. 131, No. 3. (September 2003), pp. 651-654.
    by Ren&\#233; Peeters
    posted to no-tag by dragonrez on 2005-06-12 20:25:30 as *****
  • Introduction to Algorithms, Second Edition
    (01 September 2001)
    by Thomas H Cormen, Charles E Leiserson, Ronald L Rivest, Clifford Stein
    posted to no-tag by dragonrez on 2005-06-12 18:45:08 as ***** along with 11 people jcheng marciolima gurkanbebek tmarscha dodger042 napvasconcelos chandlerc csacca pawelt eporreca sven_luzar
  • Sparse Non-negative Matrix Factorizations via Alternating Non-negativity-constrained Least Squares for Microarray Data Analysis.
    Bioinformatics (5 May 2007)
    by Hyunsoo Kim, Haesun Park
    posted to cancer nmf by dragonrez on 2007-10-17 04:05:18 as **** along with 3 people tmmurali aviad_work shigepong
  • Learning the parts of objects by non-negative matrix factorization.
    Nature, Vol. 401, No. 6755. (21 October 1999), pp. 788-791.
    by DD Lee, HS Seung
    posted to nmf nonnegative_matrix_factorization by dragonrez on 2007-10-17 04:13:23 as *** along with 14 people and 4 groups JacquesC davidr anar jfr yas yama_tah pliz scis0000001 oannes cerkut atbrew zeppe kintoki cager NU-PRL T_lab Regulomics_UCHSC contact-id
  • CD40-ligand (CD154) gene therapy for chronic lymphocytic leukemia.
    Blood, Vol. 96, No. 9. (1 November 2000), pp. 2917-2924.
    by WG Wierda, MJ Cantwell, SJ Woods, LZ Rassenti, CE Prussak, TJ Kipps
    posted to leukemia cancer by dragonrez on 2008-10-07 02:17:00 as **
  • Acquired CD40-ligand deficiency in chronic lymphocytic leukemia
    Nat Med, Vol. 3, No. 9. (1997), pp. 984-989.
    by Mark Cantwell, Tinh Hua, Jim Pappas, Thomas J Kipps
    posted to leukemia cancer by dragonrez on 2008-10-07 00:16:21 as **
  • FIP1L1-PDGFRA in chronic eosinophilic leukemia and BCR-ABL1 in chronic myeloid leukemia affect different leukemic cells
    Leukemia, Vol. aop, No. current.
    by B Crescenzi, A Chase, R La Starza, D Beacci, V Rosti, A Gallì, G Specchia, MF Martelli, P Vandenberghe, J Cools, AV Jones, NCP Cross, P Marynen, C Mecucci,
    posted to leukemia by dragonrez on 2008-10-06 22:10:22 as **
  • E-cadherin expression in melanoma cells restores keratinocyte-mediated growth control and down-regulates expression of invasion-related adhesion receptors.
    The American journal of pathology, Vol. 156, No. 5. (May 2000), pp. 1515-1525.
    by MY Hsu, FE Meier, M Nesbit, JY Hsu, P Van Belle, DE Elder, M Herlyn
    posted to cancer by dragonrez on 2008-10-06 21:28:28 as **
  • Inhibiting angiogenesis and tumorigenesis by a synthetic molecule that blocks binding of both VEGF and PDGF to their receptors
    Oncogene, Vol. aop, No. current.
    by Jiazhi Sun, De-An Wang, Rishi K Jain, Adam Carie, Steve Paquette, Eileen Ennis, Michelle A Blaskovich, Laura Baldini, Domenico Coppola, Andrew D Hamilton, Saïd M Sebti, Saïd M Sebti, Saïd M Sebti
    posted to cancer angiogenesis by dragonrez on 2008-10-06 21:06:11 as **
  • Elevated levels of the angiogenic cytokines basic fibroblast growth factor and vascular endothelial growth factor in sera of cancer patients.
    British journal of cancer, Vol. 76, No. 2. (1997), pp. 238-243.
    by LY Dirix, PB Vermeulen, A Pawinski, A Prové, I Benoy, C De Pooter, M Martin, AT Van Oosterom
    posted to cancer angiogenesis by dragonrez on 2008-10-06 21:02:24 as **
  • EGFR antagonists in cancer treatment.
    N Engl J Med, Vol. 358, No. 11. (13 March 2008), pp. 1160-1174.
    by F Ciardiello, G Tortora
    posted to cancer by dragonrez on 2008-10-06 20:50:21 as ** along with 2 people jyuh dfp7582
  • Cancer: Short-circuit to tumour cell apoptosis
    Nature Reviews Drug Discovery, Vol. 7, No. 1., pp. 18-19.
    by Alexandra Flemming
    posted to apoptosis by dragonrez on 2008-10-06 20:23:14 as **
  • Network-Based Analysis of Affected Biological Processes in Type 2 Diabetes Models
    PLoS Genetics, Vol. 3, No. 6. (1 June 2007), e96.
    by Manway Liu, Arthur Liberzon, Sek W Kong, Weil R Lai, Peter J Park, Isaac S Kohane, Simon Kasif
    posted to active_network by dragonrez on 2008-08-28 01:46:44 as ** along with 3 people tmmurali jfr ajgentles
  • Identifying functional modules in protein-protein interaction networks: an integrated exact approach
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i223-231.
    by Marcus T Dittrich, Gunnar W Klau, Andreas Rosenwald, Thomas Dandekar, Tobias Muller
    posted to active_network by dragonrez on 2008-08-28 01:41:42 as ** along with 6 people jfr jyuh chad_davis marck renatomilani tmmurali
  • Gradient directed regularization for linear regression and classification
    (2004)
    by Jerome H Friedman, Bogdan E Popescu
    posted to no-tag by dragonrez on 2008-08-21 01:13:10 as **
  • Systematic survey reveals general applicability of guilt-by-association within gene coexpression networks.
    BMC Bioinformatics, Vol. 6 (2005)
    by CJ Wolfe, IS Kohane, AJ Butte
    posted to no-tag by dragonrez on 2008-08-20 21:33:33 as ** along with 3 people balajis maryee srp33
  • BIND: the Biomolecular Interaction Network Database.
    Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 248-250.
    by GD Bader, D Betel, CW Hogue
    posted to no-tag by dragonrez on 2008-08-03 23:11:42 as ** along with 6 people and 2 groups okarsligil lfriedl chad_davis dullhunk gurkanbebek bicko kdl Bioinformatics
  • Expression profiling of medulloblastoma: PDGFRA and the RAS/MAPK pathway as therapeutic targets for metastatic disease
    Nat Genet, Vol. 29, No. 2. (October 2001), pp. 143-152.
    by Tobey J Macdonald, Kevin M Brown, Bonnie Lafleur, Katia Peterson, Christopher Lawlor, Yidong Chen, Roger J Packer, Philip Cogen, Dietrich A Stephan
    posted to no-tag by dragonrez on 2008-08-02 19:23:03 as **
  • Matrix metalloproteinases and tumor metastasis
    Cancer and Metastasis Reviews, Vol. 25, No. 1. (March 2006), pp. 9-34.
    by Elena Deryugina, James Quigley
    posted to no-tag by dragonrez on 2008-08-02 05:19:42 as **
  • Metalloproteinases: role in breast carcinogenesis, invasion and metastasis.
    Breast cancer research, Vol. 2, No. 4. (2000), pp. 252-257.
    by MJ Duffy, TM Maguire, A Hill, E Mcdermott, N O'Higgins
    posted to no-tag by dragonrez on 2008-08-02 05:12:44 as **
  • Matrix metalloproteinases: a review.
    Critical reviews in oral biology and medicine : an official publication of the American Association of Oral Biologists, Vol. 4, No. 2. (1993), pp. 197-250.
    by H Birkedal-Hansen, WG Moore, MK Bodden, LJ Windsor, B Birkedal-Hansen, A DeCarlo, JA Engler
    posted to no-tag by dragonrez on 2008-08-02 05:05:07 as **
  • Homozygous deletion of the retinoblastoma gene in an acute lymphoblastic leukemia (T) cell line
    Blood, Vol. 75, No. 3. (1 February 1990), pp. 730-735.
    by J Cheng, P Scully, JY Shew, WH Lee, V Vila, M Haas
    posted to no-tag by dragonrez on 2008-08-02 04:41:56 as **
  • Levels of retinoblastoma protein expression in newly diagnosed acute myelogenous leukemia
    Blood, Vol. 84, No. 1. (1 July 1994), pp. 256-261.
    by SM Kornblau, HJ Xu, W Zhang, SX Hu, M Beran, TL Smith, J Hester, E Estey, WF Benedict, AB Deisseroth
    posted to no-tag by dragonrez on 2008-08-02 04:37:32 as **
  • Disruption of INK4//CDK//Rb cell cycle pathway by gene hypermethylation in multiple myeloma and MGUS
    Leukemia, Vol. 17, No. 12. (2003), pp. 2533-2535.
    by CS Chim, TK Fung, R Liang
    posted to no-tag by dragonrez on 2008-08-02 04:17:53 as **
  • Whole genome expression profiling of advance stage papillary serous ovarian cancer reveals activated pathways
    Oncogene, Vol. 23, No. 49. (2004), pp. 8065-8077.
    by Howard Donninger, Tomas Bonome, Mike Radonovich, Cynthia A Pise-Masison, John Brady, Joanna H Shih, Carl J Barrett, Michael J Birrer
    posted to no-tag by dragonrez on 2008-08-02 03:55:12 as **
  • RECK is a target of Epstein-Barr virus latent membrane protein 1
    Oncogene, Vol. 22, No. 51. (2003), pp. 8263-8270.
    by Li-Teh Liu, Jyh-Ping Peng, Hui-Chiu Chang, Wen-Chun Hung
    posted to no-tag by dragonrez on 2008-08-02 03:27:33 as **
  • Less is More: Sparse Graph Mining with Compact Matrix Decomposition
    Stat. Anal. Data Min., Vol. 1, No. 1. (February 2008), pp. 6-22.
    by Jimeng Sun, Yinglian Xie, Hui Zhang, Christos Faloutsos
    posted to least-squares nmf by dragonrez on 2008-08-01 21:11:34 as ** along with 1 person hazen
  • Projected Gradient Methods for Nonnegative Matrix Factorization
    Neural Comput., Vol. 19, No. 10. (October 2007), pp. 2756-2779.
    by Chih-Jen Lin
    posted to nmf by dragonrez on 2008-08-01 21:09:33 as ** along with 2 people cager aviad_work
  • A stability based method for discovering structure in clustered data.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2002), pp. 6-17.
    by A Ben-Hur, A Elisseeff, I Guyon
    posted to clustering model_select by dragonrez on 2008-07-30 19:50:24 as **
  • From molecular to modular cell biology.
    Nature, Vol. 402, No. 6761 Suppl. (2 December 1999)
    by LH Hartwell, JJ Hopfield, S Leibler, AW Murray
    posted to modules by dragonrez on 2008-07-29 02:06:28 as ** along with 17 people and 8 groups AurelienMazurie rhem1224 balajis nuke2005 rubendrr wnpx i41m adepace javierFellow mmt mirzazadeh carmaus dejori carlk awooga tvdbulck vsausg EisenLab TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells dIEMoSIRIS ic4 generif_paper MoSi-Rostock
  • On the equivalence of nonnegative matrix factorization and spectral clustering
    (2005)
    by C Ding, X He, HD Simon
    posted to nmf by dragonrez on 2008-07-28 02:44:24 as **
  • Coexpression analysis of human genes across many microarray data sets.
    Genome Res, Vol. 14, No. 6. (June 2004), pp. 1085-1094.
    by HK Lee, AK Hsu, J Sajdak, J Qin, P Pavlidis
    posted to relational_graph_mining by dragonrez on 2008-07-27 21:01:58 as ** along with 13 people and 2 groups jiny maryee gpalidwor giovanni jeremymiller hawkeyehammer grahamc macavity1g raylim sgoetz wilbur jo_davies nedwards GeschwindLab Indigene
  • A graph-based approach to systematically reconstruct human transcriptional regulatory modules.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by X Yan, MR Mehan, Y Huang, MS Waterman, PS Yu, XJ Zhou
    posted to relational_graph_mining by dragonrez on 2008-07-27 20:37:30 as ** along with 5 people cswinburne jiny jfr shigepong tmmurali
  • Computing Frequent Graph Patterns from Semistructured Data
    (2002)
    by N Vanetik, E Gudes, SE Shimony
    posted to graph_mining by dragonrez on 2008-07-27 19:51:58 as **
  • Generalized Version Space Trees
    (2003), pp. 119-129.
    by Ulrich Rückert, Stefan Kramer
    edited by Jean F Boulicaut, Saso Dzeroski
    posted to graph_mining by dragonrez on 2008-07-27 19:05:53 as **
  • Mining Molecular Fragments: Finding Relevant Substructures of Molecules
    (2002)
    by Christian Borgelt, Michael R Berthold
    posted to graph_mining by dragonrez on 2008-07-27 01:51:36 as **
  • Comparing graph representations of protein structure for mining family-specific residue-based packing motifs.
    J Comput Biol, Vol. 12, No. 6. (g 2005), pp. 657-671.
    by J Huan, D Bandyopadhyay, W Wang, J Snoeyink, J Prins, A Tropsha
    posted to graph_mining by dragonrez on 2008-07-27 01:20:07 as ** along with 4 people and 2 groups pansapiens aalibes shuns marcius BioinfoCIPF SGU-CIPF
  • Mining closed relational graphs with connectivity constraints
    (2005), pp. 324-333.
    by Xifeng Yan, Jasmine X Zhou, Jiawei Han
    posted to graph_mining by dragonrez on 2008-07-27 00:25:06 as ** along with 2 people bigbossman graphminer
  • Finding Frequent Patterns in a Large Sparse Graph
    Data Mining and Knowledge Discovery, Vol. 11, No. 3. (November 2005), pp. 243-271.
    by Michihiro Kuramochi, George Karypis
    posted to graph_mining by dragonrez on 2008-07-27 00:23:38 as **
  • Mining coherent dense subgraphs across massive biological networks for functional discovery.
    Bioinformatics, Vol. 21 Suppl 1 (1 June 2005)
    by H Hu, X Yan, Y Huang, J Han, XJ Zhou
    posted to graph_mining by dragonrez on 2008-07-26 23:36:57 as ** along with 1 person and 1 group lfriedl kdl
  • gSpan: Graph-based substructure pattern mining
    (2002)
    by X Yan, J Han
    posted to graph_mining by dragonrez on 2008-07-26 22:42:01 as ** along with 3 people llamerada InternetAlgorithms cakmak
  • An Efficient Algorithm for Discovering Frequent Subgraphs
    IEEE Trans. on Knowl. and Data Eng., Vol. 16, No. 9. (September 2004), pp. 1038-1051.
    by Michihiro Kuramochi, George Karypis
    posted to graph_mining by dragonrez on 2008-07-26 22:34:57 as **
  • An Apriori-Based Algorithm for Mining Frequent Substructures from Graph Data
    Principles of Data Mining and Knowledge Discovery (2000), pp. 13-23.
    by Akihiro Inokuchi, Takashi Washio, Hiroshi Motoda
    posted to graph_mining by dragonrez on 2008-07-26 22:19:47 as **
  • Estimating the size of the human interactome
    Proceedings of the National Academy of Sciences, Vol. 105, No. 19. (12 May 2008), pp. 6959-6964.
    by Michael P Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong J An, Michael Lappe, Carsten Wiuf
    posted to no-tag by dragonrez on 2008-07-25 22:19:32 as ** along with 21 people and 1 group tharris zwang chrissp100 sanchezbuelna jyuh phoenixzxl tmmurali neils paolomarcatili mjoach xingxu Ema cabbagesofdoom balicea marck friendpine brianb roys Evangelia chad_davis bpcusack C. elegans / WormBase
  • The Biomolecular Interaction Network Database and related tools 2005 update.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by C Alfarano, CE Andrade, K Anthony, N Bahroos, M Bajec, K Bantoft, D Betel, B Bobechko, K Boutilier, E Burgess, K Buzadzija, R Cavero, C D'Abreo, I Donaldson, D Dorairajoo, MJ Dumontier, MR Dumontier, V Earles, R Farrall, H Feldman, E Garderman, Y Gong, R Gonzaga, V Grytsan, E Gryz, V Gu, E Haldorsen, A Halupa, R Haw, A Hrvojic, L Hurrell, R Isserlin, F Jack, F Juma, A Khan, T Kon, S Konopinsky, V Le, E Lee, S Ling, M Magidin, J Moniakis, J Montojo, S Moore, B Muskat, I Ng, JP Paraiso, B Parker, G Pintilie, R Pirone, JJ Salama, S Sgro, T Shan, Y Shu, J Siew, D Skinner, K Snyder, R Stasiuk, D Strumpf, B Tuekam, S Tao, Z Wang, M White, R Willis, C Wolting, S Wong, A Wrong, C Xin, R Yao, B Yates, S Zhang, K Zheng, T Pawson, BF Ouellette, CW Hogue
    posted to database pathway by dragonrez on 2008-07-25 19:48:51 as ** along with 5 people and 3 groups yas balajis zlu frohike dagmar T_lab dIEMoSIRIS compneur
  • The KEGG databases at GenomeNet
    Nucl. Acids Res., Vol. 30, No. 1. (1 January 2002), pp. 42-46.
    by Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Akihiro Nakaya
    posted to database pathway by dragonrez on 2008-07-25 19:45:23 as ** along with 3 people verdicchio opheliav michC
  • Metric for Measuring the Effectiveness of Clustering of DNA Microarray Expression.
    BMC Bioinformatics, Vol. 7 Suppl 2 (26 September 2006)
    by Raja Loganantharaj, Satish Cheepala, John Clifford
    posted to clustering by dragonrez on 2008-07-23 00:19:24 as ** along with 1 person jfr
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