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dragonrezs library [260 articles]

Senaste artiklarna i dragonrezs bibliotek.
  • On the equivalence between Non-negative Matrix Factorization and Probabilistic Latent Semantic Indexing
    Comput. Stat. Data Anal., Vol. 52, No. 8. (April 2008), pp. 3913-3927.
    by Chris Ding, Tao Li, Wei Peng
    posted to nmf by dragonrez on 2008-07-16 21:28:55 as **
  • Spectral Graph Theory (CBMS Regional Conference Series in Mathematics, No. 92) (Cbms Regional Conference Series in Mathematics)
    (06 February 1997)
    by Fan RK Chung
    posted to spectral clustering by dragonrez on 2008-07-16 21:14:06 as ** along with 6 people and 4 groups jekky BarrosH filippone sdvillal bigbossman jung_dalglish CMU-HCII Blog_and_Wiki_Research automatic_summarization ASR
  • Data clustering: a review
    ACM Comput. Surv., Vol. 31, No. 3. (September 1999), pp. 264-323.
    by AK Jain, MN Murty, PJ Flynn
    posted to clustering by dragonrez on 2008-07-16 03:26:47 as ** along with 41 people and 14 groups AbnerCYH mercutio egh ericyu karbak dgruiz pdlug thsant mapio mhay davidbrooks imouthesmp dfrankow rahul marcius stagediver sterovetta sangeetha chadhogg sdvillal dgront styliani alexhofmann gane5h ianturton bigbossman perceptron allmensch aviad_work julianpan atbrew sugarexpletive KillianKay mkolar sajan dvisoin theodora jcsilva furykerry koles paulovn video_retrieval kdl GroupLens Bioinformatics SRL insilicodrug BioinfoCIPF SGU-CIPF MScResearchRessources NDSiTransitRessources NDS106ProjectRessources NDSIntraVehicularResearch ahat Community_SSTZ
  • BioGRID: a general repository for interaction datasets.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by C Stark, BJ Breitkreutz, T Reguly, L Boucher, A Breitkreutz, M Tyers
    posted to no-tag by dragonrez on 2008-07-08 05:16:50 as ** along with 9 people tmmurali chasmand carlk jyuh balajis koller nm lpfernandes Evangelia
  • Integrative microarray analysis of pathways dysregulated in metastatic prostate cancer.
    Cancer Res, Vol. 67, No. 21. (1 November 2007), pp. 10296-10303.
    by SR Setlur, TE Royce, A Sboner, JM Mosquera, F Demichelis, MD Hofer, KD Mertz, M Gerstein, MA Rubin
    posted to no-tag by dragonrez on 2008-05-09 19:38:10 as ** along with 2 people jfr oelemento
  • BicAT: a biclustering analysis toolbox.
    Bioinformatics (Oxford, England), Vol. 22, No. 10. (15 May 2006), pp. 1282-1283.
    by S Barkow, S Bleuler, A Prelic, P Zimmermann, E Zitzler
    posted to biclustering by dragonrez on 2008-05-06 21:18:56 as **
  • Greedy Approximation Algorithms for Finding Dense Components in a Graph
    Lecture Notes in Computer Science, Vol. 1913 (January 2000), pp. 84-95.
    by Moses Charikar
    posted to graph_density by dragonrez on 2008-05-06 20:26:11 as ** along with 2 people and 1 group tmmurali okarsligil Bioinformatics
  • Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data.
    Nat Genet, Vol. 34, No. 2. (June 2003), pp. 166-176.
    by E Segal, M Shapira, A Regev, D Pe'er, D Botstein, D Koller, N Friedman
    posted to no-tag by dragonrez on 2008-05-03 23:07:24 as ** along with 13 people chrisamiller pkm tvdbulck tuck bayesian wnpx tabu koller olympos fishtank dimatura karfunkel roys
  • Laminin-binding integrins in tumor progression and metastasis
    Seminars in Cancer Biology, Vol. 7, No. 3. (June 1996), pp. 119-128.
    by Barry L Ziober, Ching-Shwun Lin, Randall H Kramer
    posted to no-tag by dragonrez on 2008-05-03 18:30:52 as **
  • Pro-inflammatory cytokines affect pancreatic carcinoma cell. Endothelial cell interactions.
    JOP : Journal of the pancreas, Vol. 7, No. 5. (2006), pp. 454-464.
    by M ten Kate, LJ Hofland, PM van Koetsveld, J Jeekel, CH van Eijck
    posted to no-tag by dragonrez on 2008-05-03 00:50:25 as **
  • The expression of adhesion molecules and the influence of inflammatory cytokines on the adhesion of human pancreatic carcinoma cells to mesothelial monolayers.
    Pancreas, Vol. 32, No. 4. (May 2006), pp. 396-402.
    by WM van Grevenstein, LJ Hofland, J Jeekel, CH van Eijck
    posted to no-tag by dragonrez on 2008-05-02 23:51:51 as **
  • Systemic immune dysfunction in pancreatic cancer patients
    Langenbeck's Archives of Surgery, Vol. 392, No. 3. (May 2007), pp. 353-358.
    by Poch, Bertram, Lotspeich, Errki, Ramadani, Marco, Gansauge, Susanne, Beger, Hans, Gansauge, Frank
    posted to no-tag by dragonrez on 2008-05-02 23:14:24 as **
  • Tumor necrosis factor alpha enhances secretion of transforming growth factor beta2 in MCF-7 breast cancer cells.
    Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 2, No. 5. (May 1996), pp. 827-835.
    by DN Danforth, MK Sgagias
    posted to cancer by dragonrez on 2008-05-02 20:26:14 as **
  • Increased levels of alpha-6 integrins are associated with the metastatic phenotype of human breast cancer cells
    Clinical and Experimental Metastasis, Vol. 17, No. 4. (1 June 1999), pp. 323-330.
    by Ratna Mukhopadhyay, Richard L Theriault, Janet E Price
    posted to no-tag by dragonrez on 2008-05-02 16:37:13 as **
  • Discovering statistically significant biclusters in gene expression data.
    Bioinformatics, Vol. 18 Suppl 1 (2002)
    by A Tanay, R Sharan, R Shamir
    posted to no-tag by dragonrez on 2008-04-30 19:05:27 as ** along with 8 people and 2 groups librain carlk tvdbulck ggrot okarsligil lfriedl incovoma dps kdl Bioinformatics
  • Evaluation of gene-expression clustering via mutual information distance measure
    BMC Bioinformatics, Vol. 8 (30 March 2007), 111.
    by Ido Priness, Oded Maimon, Irad Ben-Gal
    posted to microarray by dragonrez on 2008-04-30 02:42:18 as **
  • Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
    by Yoav Benjamini, Yosef Hochberg
    posted to no-tag by dragonrez on 2008-04-30 02:32:53 as ** along with 13 people and 2 groups isimpson jyuh RMGraze oannes vplagnol frohike grahamc shigepong ccr axelon ugengma amsantos rschulz Bioinformatics Regulomics_UCHSC
  • Gradient Directed Regularization
    by Jerome H Friedman, Bogdan E Popescu
    posted to no-tag by dragonrez on 2008-04-30 02:29:31 as **
  • ConnectComplete Regularization and variable selection via the elastic net
    Journal of the Royal Statistical Society: Series B (Statistical Methodology), Vol. 67, No. 2. (April 2005), pp. 301-320.
    by Zou Hui1, Hastie Trevor
    posted to no-tag by dragonrez on 2008-04-30 02:25:59 as **
  • The Stanford Microarray Database: implementation of new analysis tools and open source release of software.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by J Demeter, C Beauheim, J Gollub, T Hernandez-Boussard, H Jin, D Maier, JC Matese, M Nitzberg, F Wymore, ZK Zachariah, PO Brown, G Sherlock, CA Ball
    posted to no-tag by dragonrez on 2008-04-30 01:39:34 as ** along with 5 people and 1 group jfr balajis hpiwowar ghattem azazello MBLAB
  • VIRGO: computational prediction of gene functions.
    Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006)
    by N Massjouni, CG Rivera, TM Murali
    posted to functional_annotation by dragonrez on 2008-04-28 02:37:54 as **
  • A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas
    Mol Syst Biol, Vol. 4 (12 February 2008)
    by Kartik M Mani, Celine Lefebvre, Kai Wang, Wei K Lim, Katia Basso, Riccardo Dalla-Favera, Andrea Califano
    posted to pathway_perturbation by dragonrez on 2008-04-23 22:54:37 as ** along with 4 people tmmurali ealloza shikin dap5087
  • A fast non-negativity-constrained least squares algorithm
    Journal of Chemometrics, Vol. 11, No. 5. (1997), pp. 393-401.
    by Rasmus Bro, Sijmen De Jong
    posted to nmf by dragonrez on 2008-04-23 04:10:26 as **
  • Metagene projection for cross-platform, cross-species characterization of global transcriptional states.
    Proc Natl Acad Sci U S A, Vol. 104, No. 14. (3 April 2007), pp. 5959-5964.
    by P Tamayo, D Scanfeld, BL Ebert, MA Gillette, CW Roberts, JP Mesirov
    posted to nmf by dragonrez on 2008-04-23 02:05:45 as ** along with 6 people nuin oelemento jyuh jfr aviad_work ghattem
  • Least squares formulation of robust non-negative factor analysis
    Chemometrics and Intelligent Laboratory Systems, Vol. 37 (May 1997)
    by P Paatero
    posted to nmf by dragonrez on 2008-04-23 01:56:42 as **
  • Algorithms for Non-negative Matrix Factorization
    (2000), pp. 556-562.
    by Daniel D Lee, Sebastian H Seung
    posted to nmf by dragonrez on 2008-04-23 01:46:12 as ** along with 11 people and 3 groups vlachmore anar yas luispedro pliz walkking aviad_work atbrew sugarexpletive phlow vsree007 T_lab Computer_Graphics csb_journal_club_public
  • Non-negative matrix factorization with sparseness constraints
    (25 Aug 2004)
    by Patrik O Hoyer
    posted to nmf by dragonrez on 2008-04-22 19:24:35 as ** along with 4 people and 1 group luispedro yama_tah walkking aviad_work Computer_Graphics
  • Yeast microarrays for genome wide parallel genetic and gene expression analysis.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 94, No. 24. (25 November 1997), pp. 13057-13062.
    by DA Lashkari, JL DeRisi, JH McCusker, AF Namath, C Gentile, SY Hwang, PO Brown, RW Davis
    posted to microarray by dragonrez on 2008-04-16 22:42:21 as **
  • Quantitative monitoring of gene expression patterns with a complementary DNA microarray.
    Science, Vol. 270, No. 5235. (20 October 1995), pp. 467-470.
    by M Schena, D Shalon, RW Davis, PO Brown
    posted to microarray by dragonrez on 2008-04-16 22:40:28 as ** along with 8 people and 1 group frohike shikin Dax42 stsaft fisherp jeremymiller tvdbulck talponer GeschwindLab
  • Role of Integrins in Cancer: Survey of Expression Patterns
    Proc Soc Exp Biol Med, Vol. 222, No. 2. (1 November 1999), pp. 124-138.
    by Gerald J Mizejewski
    posted to cancer integrin by dragonrez on 2008-04-10 20:57:04 as **
  • Duel nature of TGF-beta signaling: tumor suppressor vs. tumor promoter.
    Current opinion in oncology, Vol. 17, No. 1. (January 2005), pp. 49-54.
    by KE Bachman, BH Park
    posted to no-tag by dragonrez on 2008-04-07 19:05:07 as **
  • The role for transforming growth factor-beta (TGF-beta) in human cancer.
    Critical reviews in oncogenesis, Vol. 10, No. 4. (1999), pp. 303-360.
    by LI Gold
    posted to cancer pathway_perturbation tgf by dragonrez on 2008-04-07 17:10:24 as **
  • Review article: immune suppression and colorectal cancer
    Alimentary Pharmacology & Therapeutics, Vol. 24, No. 8. (October 2006), pp. 1163-1177.
    by C Evans, AG Dalgleish, D Kumar
    posted to no-tag by dragonrez on 2008-03-27 22:02:20 as **
  • Epidermal growth factor receptor overexpression correlates with a poor prognosis in completely resected non-small-cell lung cancer.
    Ann Oncol, Vol. 15, No. 1. (January 2004), pp. 28-32.
    by G Selvaggi, S Novello, V Torri, E Leonardo, P De Giuli, P Borasio, C Mossetti, F Ardissone, P Lausi, GV Scagliotti
    posted to no-tag by dragonrez on 2008-03-27 20:50:04 as **
  • Metaplastic breast carcinomas exhibit EGFR, but not HER2, gene amplification and overexpression: immunohistochemical and chromogenic in situ hybridization analysis.
    Breast Cancer Res, Vol. 7, No. 6. (2005)
    by JS Reis-Filho, F Milanezi, S Carvalho, PT Simpson, D Steele, K Savage, MB Lambros, EM Pereira, JM Nesland, SR Lakhani, FC Schmitt
    posted to no-tag by dragonrez on 2008-03-27 20:47:15 as **
  • Repression of TGF-beta signaling by the oncogenic protein SKI in human melanomas: consequences for proliferation, survival, and metastasis.
    Oncogene, Vol. 22, No. 20. (19 May 2003), pp. 3123-3129.
    by EE Medrano
    posted to no-tag by dragonrez on 2008-03-27 20:45:49 as **
  • Expression of Transforming Growth Factor-beta Receptors and Related Cell-Cycle Components in Transitional-Cell Carcinoma of the Bladder.
    Mol Urol, Vol. 3, No. 4. (1999), pp. 371-380.
    by TW McGarvey, E Tait, JE Tomaszewski, SB Malkowicz
    posted to no-tag by dragonrez on 2008-03-27 20:44:47 as **
  • Transforming growth factor-beta and breast cancer: Cell cycle arrest by transforming growth factor-beta and its disruption in cancer.
    Breast Cancer Res, Vol. 2, No. 2. (2000), pp. 116-124.
    by J Donovan, J Slingerland
    posted to no-tag by dragonrez on 2008-03-27 20:39:59 as **
  • Current and new strategies in immunotherapy for superficial bladder cancer.
    Urology, Vol. 64, No. 3. (September 2004), pp. 409-421.
    by FG Perabo, SC Müller
    posted to no-tag by dragonrez on 2008-03-27 20:36:05 as **
  • Treatment of B-cell lymphoma with chimeric IgG and single-chain Fv antibody-interleukin-2 fusion proteins.
    Blood, Vol. 92, No. 6. (15 September 1998), pp. 2103-2112.
    by SJ Liu, YP Sher, CC Ting, KW Liao, CP Yu, MH Tao
    posted to no-tag by dragonrez on 2008-03-27 20:04:23 as **
  • High-dose recombinant interleukin 2 therapy for patients with metastatic melanoma: analysis of 270 patients treated between 1985 and 1993.
    J Clin Oncol, Vol. 17, No. 7. (July 1999), pp. 2105-2116.
    by MB Atkins, MT Lotze, JP Dutcher, RI Fisher, G Weiss, K Margolin, J Abrams, M Sznol, D Parkinson, M Hawkins, C Paradise, L Kunkel, SA Rosenberg
    posted to cancer by dragonrez on 2008-03-27 19:44:42 as **
  • Alpha 6.beta 1 integrin (laminin receptor) is down-regulated by tumor necrosis factor alpha and interleukin-1 beta in human endothelial cells.
    J Biol Chem, Vol. 267, No. 26. (15 September 1992), pp. 18303-18307.
    by P Defilippi, L Silengo, G Tarone
    posted to no-tag by dragonrez on 2008-03-27 19:18:21 as **
  • Non-specific immunotherapy with bacille Calmette-Guérin (BCG).
    Clin Exp Immunol, Vol. 123, No. 2. (February 2001), pp. 179-180.
    by AP van der Meijden
    posted to cancer by dragonrez on 2008-03-13 20:18:15 as **
  • ArrayXPath: mapping and visualizing microarray gene-expression data with integrated biological pathway resources using Scalable Vector Graphics.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by HJ Chung, M Kim, CH Park, J Kim, JH Kim
    posted to fishers_exact pathway_perturbation by dragonrez on 2008-03-13 18:36:21 as ** along with 1 person fisherp
  • Pathway Miner: extracting gene association networks from molecular pathways for predicting the biological significance of gene expression microarray data.
    Bioinformatics, Vol. 20, No. 13. (1 September 2004), pp. 2156-2158.
    by R Pandey, RK Guru, DW Mount
    posted to fishers_exact pathway_perturbation by dragonrez on 2008-03-13 18:34:27 as ** along with 2 people and 1 group tardigrade ealloza BioinfoCIPF
  • Cytoscape: a software environment for integrated models of biomolecular interaction networks.
    Genome Res, Vol. 13, No. 11. (November 2003), pp. 2498-2504.
    by P Shannon, A Markiel, O Ozier, NS Baliga, JT Wang, D Ramage, N Amin, B Schwikowski, T Ideker
    posted to fishers_exact pathway_perturbation by dragonrez on 2008-03-13 18:32:43 as ** along with 11 people and 3 groups carlk balajis tvdbulck frohike carmaus dagmar natstreet jlh64 Evangelia pmendes yggdrasil dIEMoSIRIS MoSi-Rostock compneur
  • PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis.
    BMC Bioinformatics, Vol. 4 (7 November 2003)
    by D Pan, N Sun, KH Cheung, Z Guan, L Ma, M Holford, X Deng, H Zhao
    posted to fishers_exact pathway_perturbation by dragonrez on 2008-03-13 18:31:24 as **
  • Pathway Processor: a tool for integrating whole-genome expression results into metabolic networks.
    Genome Res, Vol. 12, No. 7. (July 2002), pp. 1121-1126.
    by P Grosu, JP Townsend, DL Hartl, D Cavalieri
    posted to fishers_exact pathway_perturbation by dragonrez on 2008-03-13 18:30:10 as **
  • GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways
    Nat Genet, Vol. 31, No. 1. (May 2002), pp. 19-20.
    by Kam D Dahlquist, Nathan Salomonis, Karen Vranizan, Steven C Lawlor, Bruce R Conklin
    posted to fishers_exact pathway_perturbation by dragonrez on 2008-03-13 18:28:17 as ** along with 4 people and 1 group AlexanderPico jyuh xwbcn fisherp ConklinLab
  • MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data.
    Genome Biol, Vol. 4, No. 1. (2003)
    by SW Doniger, N Salomonis, KD Dahlquist, K Vranizan, SC Lawlor, BR Conklin
    posted to fishers_exact pathway_perturbation by dragonrez on 2008-03-13 18:27:23 as ** along with 2 people and 1 group AlexanderPico heliopais ConklinLab
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