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djkts metagenomics [73 articles]

Senaste hänvisningarna i djkts bibliotek insorterade under taggen metagenomics. You can also see everyone's metagenomics.
  • Metagenomics reveals our incomplete knowledge of global diversity.
    Bioinformatics (Oxford, England) (13 July 2008)
    by Miguel Pignatelli, Gabriel Aparicio, Ignacio Blanquer, Vicente Hernández, Andrés Moya, Javier Tamames
    posted to metagenomics diversity by djkt on 2008-09-05 19:09:34 as read along with 3 people and 1 group reyez bootsy nuin iSEEM
  • Resolving Individuals Contributing Trace Amounts of DNA to Highly Complex Mixtures Using High-Density SNP Genotyping Microarrays
    PLoS Genet, Vol. 4, No. 8. (2008), e1000167.
    by Nils Homer, Szabolcs Szelinger, Margot Redman, David Duggan, Waibhav Tembe, Jill Muehling, John V Pearson, Dietrich A Stephan, Stanley F Nelson, David W Craig
    posted to snps metagenomics by djkt on 2008-09-01 18:55:00 as ** along with 3 people jasonbobe rs fpattyn
  • Significant contribution of Archaea to extant biomass in marine subsurface sediments
    Nature (20 July 2008)
    by Julius S Lipp, Yuki Morono, Fumio Inagaki, Kai-Uwe Hinrichs
    posted to ecology metagenomics microbes by djkt on 2008-08-20 20:14:10 as *** along with 1 person and 1 group neils iSEEM
  • Computational Improvements Reveal Great Bacterial Diversity and High Metal Toxicity in Soil
    Science, Vol. 309, No. 5739. (26 August 2005), pp. 1387-1390.
    by Jason Gans, Murray Wolinsky, John Dunbar
    posted to diversity ecology metagenomics microbes by djkt on 2008-08-15 18:22:43 as ** along with 4 people and 1 group knaseanka jmeppley paleorthid jlgreen iSEEM
  • Binning sequences using very sparse labels within a metagenome
    BMC Bioinformatics, Vol. 9 (28 April 2008), 215.
    by Chon-Kit K Chan, Arthur L Hsu, Saman K Halgamuge, Sen-Lin Tang
    posted to metagenomics microbes by djkt on 2008-08-15 18:13:29 as ** along with 4 people and 2 groups alexl mjetten werwiesel jlgreen microbiology_nijmegen iSEEM
  • The Airborne Metagenome in an Indoor Urban Environment
    PLoS ONE, Vol. 3, No. 4. (2 April 2008), e1862.
    by Susannah G Tringe, Tao Zhang, Xuguo Liu, Yiting Yu, Wah H Lee, Jennifer Yap, Fei Yao, Sim T Suan, Seah K Ing, Matthew Haynes, Forest Rohwer, Chia L Wei, Patrick Tan, James Bristow, Edward M Rubin, Yijun Ruan
    posted to metagenomics microbes by djkt on 2008-08-15 17:55:03 as *** along with 1 person and 1 group semrich iSEEM
  • Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions
    ISME J, Vol. 2, No. 8. (May 2008), pp. 865-886.
    by Ana-Belen Martin-Cuadrado, Francisco Rodriguez-Valera, David Moreira, Jose C Alba, Elena Ivars-Martinez, Matthew R Henn, Emmanuel Talla, Purificacion Lopez-Garcia
    posted to diversity ecology metagenomics microbes by djkt on 2008-08-08 02:28:19 as read along with 1 person and 2 groups jlgreen Green Lab iSEEM
  • Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment
    PNAS
    by Biddle
    posted to metagenomics microbes by djkt on 2008-08-08 02:24:01 as ** along with 1 person and 2 groups jlgreen Green Lab iSEEM
  • The rational exploration of microbial diversity
    ISME (2008)
    by Christopher Quince, Thomas P Curtis, William T Sloan
    posted to diversity metagenomics microbes by djkt on 2008-08-08 02:14:18 as read along with 1 person and 2 groups jlgreen Green Lab iSEEM
  • Biogeography: An Emerging Cornerstone for Understanding Prokaryotic Diversity, Ecology, and Evolution
    Microbial Ecology, Vol. 53, No. 2. (February 2007), pp. 197-207.
    by Ramette, Alban, Tiedje, James
    posted to diversity ecology evolution metagenomics microbes by djkt on 2008-07-29 21:13:00 as read along with 1 person and 2 groups jlgreen Green Lab iSEEM
  • The Human Microbiome Project
    Nature, Vol. 449, pp. 804-810.
    by Peter J Turnbaugh, Ruth E Ley, Micah Hamady, Claire M Fraser-Liggett, Rob Knight, Jeffrey I Gordon
    posted to human metagenomics review by djkt on 2008-07-29 21:10:58 as ** along with 1 person and 2 groups jlgreen Green Lab iSEEM
  • Biodiversity and biogeography of phages in modern stromatolites and thrombolites
    Nature (02 March 2008)
    by Christelle Desnues, Beltran Rodriguez-Brito, Steve Rayhawk, Scott Kelley, Tuong Tran, Matthew Haynes, Hong Liu, Mike Furlan, Linda Wegley, Betty Chau, Yijun Ruan, Dana Hall, Florent E Angly, Robert A Edwards, Linlin Li, Rebecca V Thurber, Pamela R Reid, Janet Siefert, Valeria Souza, David L Valentine, Brandon K Swan, Mya Breitbart, Forest Rohwer
    posted to diversity ecology metagenomics virus by djkt on 2008-07-29 20:46:52 as ** along with 2 people and 2 groups dayjm jlgreen Green Lab iSEEM
  • Tracking microbial biodiversity through molecular and genomic ecology.
    Research in microbiology, Vol. 159, No. 1. (b 2008), pp. 67-73.
    by P López-García, D Moreira
    posted to ecology evolution metagenomics microbes popgen review by djkt on 2008-07-29 20:36:24 as read along with 2 people and 3 groups mjetten jlgreen microbiology_nijmegen Green Lab iSEEM
  • Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior
    Science, Vol. 311, No. 5760. (27 January 2006), pp. 496-503.
    by Edward F Delong, Christina M Preston, Tracy Mincer, Virginia Rich, Steven J Hallam, Niels-Ulrik Frigaard, Asuncion Martinez, Matthew B Sullivan, Robert Edwards, Beltran R Brito, Sallie W Chisholm, David M Karl
    posted to ecology metagenomics microbes by djkt on 2008-07-29 20:28:01 as read along with 11 people and 4 groups eoghanharr dayjm jmeppley michC bluto jdelcampo beatrizfernandez mjetten mcox vrich jlgreen Microbial-Ecology microbiology_nijmegen Green Lab iSEEM
  • Comparative Metagenomics of Microbial Communities
    Science, Vol. 308, No. 5721. (22 April 2005), pp. 554-557.
    by Susannah G Tringe, Christian von Mering, Arthur Kobayashi, Asaf A Salamov, Kevin Chen, Hwai W Chang, Mircea Podar, Jay M Short, Eric J Mathur, John C Detter, Peer Bork, Philip Hugenholtz, Edward M Rubin
    posted to metagenomics microbes proteins by djkt on 2008-07-29 20:26:23 as read along with 11 people and 4 groups jmeppley AaronDarling azazello wenhan sgoetz bluto vrich sanchezbuelna mcox mjetten jlgreen anammox microbiology_nijmegen Green Lab iSEEM
  • Community genomics in microbial ecology and evolution
    Nature Reviews Microbiology, Vol. 3, No. 6. (01 June 2005), pp. 489-498.
    by Eric E Allen, Jillian F Banfield
    posted to evolution metagenomics microbes review by djkt on 2008-07-29 20:24:26 as read along with 4 people and 2 groups knaseanka jmeppley mcox jlgreen Green Lab iSEEM
  • Genomic patterns of recombination, clonal divergence and environment in marine microbial populations
    posted to ecology metagenomics microbes popgen by djkt on 2008-07-29 20:12:28 as read along with 1 person and 2 groups jlgreen Green Lab iSEEM
  • Use of simulated data sets to evaluate the fidelity of metagenomic processing methods.
    Nat Methods (29 April 2007)
    by Konstantinos Mavromatis, Natalia Ivanova, Kerrie Barry, Harris Shapiro, Eugene Goltsman, Alice C C McHardy, Isidore Rigoutsos, Asaf Salamov, Frank Korzeniewski, Miriam Land, Alla Lapidus, Igor Grigoriev, Paul Richardson, Philip Hugenholtz, Nikos C C Kyrpides
    posted to metagenomics microbes simulation by djkt on 2008-07-29 20:03:02 as read along with 10 people and 5 groups Yanno oamg jmeppley bluto azazello GustavoLacerda carlk alexl mjetten jlgreen Glimcher_Lab Bioinformatics microbiology_nijmegen Green Lab iSEEM
  • Accurate phylogenetic classification of variable-length DNA fragments
    Nature Methods, Vol. 4, No. 1. (10 December 2006), pp. 63-72.
    by Alice C Mchardy, Héctor G Martín, Aristotelis Tsirigos, Philip Hugenholtz, Isidore Rigoutsos
    posted to metagenomics microbes phylogenetics by djkt on 2008-07-29 20:01:28 as read along with 4 people and 3 groups bluto azazello wenhan jlgreen MBLAB Green Lab iSEEM
  • Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments
    Science, Vol. 315, No. 5815. (23 February 2007), pp. 1126-1130.
    by C von Mering, P Hugenholtz, J Raes, SG Tringe, T Doerks, LJ Jensen, N Ward, P Bork
    posted to evolution metagenomics microbes phylogenetics by djkt on 2008-07-29 19:58:59 as read along with 12 people and 7 groups ana nickluscombe michC bluto agg19954 TaqSys azazello Thaverkamp larsjuhljensen rvgomes mjetten jlgreen structural_bioinformatics Bioinformatics EBI-regulation Microbial-Ecology microbiology_nijmegen Green Lab iSEEM
  • The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity.
    The ISME journal (8 May 2008)
    by Stephen J J Bent, Larry J J Forney
    posted to diversity metagenomics microbes by djkt on 2008-07-29 19:48:18 as read along with 3 people and 2 groups jdelcampo jlgreen skembel Green Lab iSEEM
  • Environmental Shotgun Sequencing: Its Potential and Challenges for Studying the Hidden World of Microbes
    PLoS Biology, Vol. 5, No. 3. (1 March 2007), e82.
    by Jonathan A Eisen
    posted to metagenomics review by djkt on 2008-07-24 23:21:06 as read along with 7 people and 3 groups jmeppley jdelcampo azazello beatrizfernandez xingxu jlgreen olympos Microbial-Ecology Green Lab iSEEM
  • Viral population estimation using pyrosequencing.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    by N Eriksson, L Pachter, Y Mitsuya, SY Rhee, C Wang, B Gharizadeh, M Ronaghi, RW Shafer, N Beerenwinkel
    posted to diversity metagenomics popgen virus by djkt on 2008-07-24 23:16:52 as read along with 2 people and 1 group jmeppley bmaust iSEEM
  • Inference of population genetic parameters in metagenomics: A clean look at messy data
    Genome Res., Vol. 16, No. 10. (1 October 2006), pp. 1320-1327.
    by Philip L Johnson, Montgomery Slatkin
    posted to metagenomics popgen by djkt on 2008-07-24 23:14:43 as read along with 2 people and 1 group jmeppley bluto iSEEM
  • Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes
    PLoS Comput Biol, Vol. 4, No. 4. (18 April 2008), e1000057.
    by Jon Bohlin, Eystein Skjerve, David W Ussery
    posted to metagenomics microbes by djkt on 2008-07-24 23:12:46 as read along with 1 person and 2 groups jlgreen iSEEM Green Lab
  • FastGroupII: A web-based bioinformatics platform for analyses of large 16S rDNA libraries
    BMC Bioinformatics, Vol. 7, No. 1. (2006)
    by Yanan Yu, Mya Breitbart, Pat Mcnairnie, Forest Rohwer
    posted to metagenomics rna by djkt on 2008-07-24 23:08:05 as read along with 1 group iSEEM
  • The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific
    PLoS Biology, Vol. 5, No. 3. (1 March 2007), e77.
    by Douglas B Rusch, Aaron L Halpern, Granger Sutton, Karla B Heidelberg, Shannon Williamson, Shibu Yooseph, Dongying Wu, Jonathan A Eisen, Jeff M Hoffman, Karin Remington, Karen Beeson, Bao Tran, Hamilton Smith, Holly Baden-Tillson, Clare Stewart, Joyce Thorpe, Jason Freeman, Cynthia Andrews-Pfannkoch, Joseph E Venter, Kelvin Li, Saul Kravitz, John F Heidelberg, Terry Utterback, Yu-Hui Rogers, Luisa I Falcón, Valeria Souza, Germán Bonilla-Rosso, Luis E Eguiarte, David M Karl, Shubha Sathyendranath, Trevor Platt, Eldredge Bermingham, Victor Gallardo, Giselle Tamayo-Castillo, Michael R Ferrari, Robert L Strausberg, Kenneth Nealson, Robert Friedman, Marvin Frazier, Craig J Venter
    posted to metagenomics by djkt on 2008-07-24 23:03:42 as read along with 9 people and 5 groups jmeppley kaspermunch michC jdelcampo stajich skoch3 beatrizfernandez kinestetika Thaverkamp Bioinformatics Microbial-Ecology Koch_Lab microbiology_nijmegen iSEEM
  • Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters.
    PLoS Biol, Vol. 4, No. 6. (June 2006)
    by D Wu, SC Daugherty, SE Van Aken, GH Pai, KL Watkins, H Khouri, LJ Tallon, JM Zaborsky, HE Dunbar, PL Tran, NA Moran, JA Eisen
    posted to metagenomics microbes rna by djkt on 2008-07-24 22:43:18 as read along with 1 person and 1 group operon iSEEM
  • Predicting prokaryotic ecological niches using genome sequence analysis.
    PLoS ONE, Vol. 2, No. 1. (2007)
    by G Suen, BS Goldman, RD Welch
    posted to ecology metagenomics microbes by djkt on 2008-07-24 22:41:01 as read along with 5 people and 3 groups jdelcampo blobbybirdman Thaverkamp kroos druvus Microbial-Ecology Myxo group iSEEM
  • Spatial scaling of microbial eukaryote diversity
    Nature, Vol. 432, No. 7018. (09 December 2004), pp. 747-750.
    by Jessica L Green, Andrew J Holmes, Mark Westoby, Ian Oliver, David Briscoe, Mark Dangerfield, Michael Gillings, Andrew J Beattie
    posted to ecology metagenomics microbes by djkt on 2008-07-24 19:04:47 as read along with 1 group iSEEM
  • The diversity and biogeography of soil bacterial communities.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 3. (17 January 2006), pp. 626-631.
    by N Fierer, RB Jackson
    posted to ecology metagenomics microbes by djkt on 2008-07-24 19:03:48 as read along with 1 group iSEEM
  • Larger Islands House More Bacterial Taxa
    Science, Vol. 308, No. 5730. (24 June 2005), 1884.
    by Thomas Bell, Duane Ager, Ji-Inn Song, Jonathan A Newman, Ian P Thompson, Andrew K Lilley, Christopher J van der Gast
    posted to ecology metagenomics microbes by djkt on 2008-07-24 19:02:53 as read along with 1 group iSEEM
  • A taxa-area relationship for bacteria
    Nature, Vol. 432, No. 7018. (09 December 2004), pp. 750-753.
    by Claire C Horner-Devine, Melissa Lage, Jennifer B Hughes, Brendan JM Bohannan
    posted to ecology metagenomics microbes by djkt on 2008-07-24 19:01:07 as read along with 1 person and 1 group mcox iSEEM
  • The application of rarefaction techniques to molecular inventories of microbial diversity.
    Methods Enzymol, Vol. 397 (2005), pp. 292-308.
    by JB Hughes, JJ Hellmann
    posted to diversity metagenomics microbes by djkt on 2008-07-24 19:00:05 as read along with 1 person and 1 group rabu iSEEM
  • Quantitative and Qualitative beta Diversity Measures Lead to Different Insights into Factors That Structure Microbial Communities
    Appl. Environ. Microbiol., Vol. 73, No. 5. (1 March 2007), pp. 1576-1585.
    by Catherine A Lozupone, Micah Hamady, Scott T Kelley, Rob Knight
    posted to diversity metagenomics by djkt on 2008-07-24 18:59:15 as read along with 1 person and 1 group Olaf_Ilzins iSEEM
  • Global patterns in bacterial diversity
    by Catherine A Lozupone, Rob Knight
    posted to diversity metagenomics microbes review by djkt on 2008-07-24 18:58:06 as read along with 1 group iSEEM
  • Bioinformatics for whole-genome shotgun sequencing of microbial communities.
    PLoS Comput Biol, Vol. 1, No. 2. (July 2005)
    by K Chen, L Pachter
    posted to metagenomics review by djkt on 2008-07-24 18:53:51 as ** along with 7 people and 3 groups knaseanka ana jmeppley dullhunk bluto wenhan druvus structural_bioinformatics Bioinformatics iSEEM
  • A statistical toolbox for metagenomics: assessing functional diversity in microbial communities
    BMC Bioinformatics, Vol. 9 (23 January 2008), 34.
    by Patrick Schloss, Jo Handelsman
    posted to db diversity metagenomics rna by djkt on 2008-07-24 18:51:25 as ** along with 5 people and 4 groups jmeppley Thaverkamp alexisfjdufresne mjetten bluto Microbial-Ecology anammox microbiology_nijmegen iSEEM
  • Evaluating different approaches that test whether microbial communities have the same structure.
    The ISME journal, Vol. 2, No. 3. (March 2008), pp. 265-275.
    by PD Schloss
    posted to diversity metagenomics review by djkt on 2008-07-24 18:50:14 as ** along with 1 person and 1 group sconlan iSEEM
  • An application of statistics to comparative metagenomics.
    BMC Bioinformatics, Vol. 7, No. 1. (20 March 2006)
    by Beltran Rodriguez-Brito, Forest Rohwer, Robert Edwards
    posted to diversity metagenomics by djkt on 2008-07-24 18:48:39 as ** along with 4 people and 1 group knaseanka bluto jmeppley carpi iSEEM
  • The marine viromes of four oceanic regions.
    PLoS Biol, Vol. 4, No. 11. (November 2006)
    by FE Angly, B Felts, M Breitbart, P Salamon, RA Edwards, C Carlson, AM Chan, M Haynes, S Kelley, H Liu, JM Mahaffy, JE Mueller, J Nulton, R Olson, R Parsons, S Rayhawk, CA Suttle, F Rohwer
    posted to ecology metagenomics virus by djkt on 2008-07-24 18:47:14 as ** along with 4 people and 1 group balicea bluto xingxu jlgreen iSEEM
  • UniFrac - An online tool for comparing microbial community diversity in a phylogenetic context
    BMC Bioinformatics, Vol. 7 (07 August 2006), 371.
    by Catherine Lozupone, Micah Hamady, Rob Knight
    posted to diversity metagenomics phylogenetics by djkt on 2008-07-24 18:45:57 as read along with 1 person and 1 group mcox iSEEM
  • Phylogenetic Approaches for Describing and Comparing the Diversity of Microbial Communities
    Appl. Environ. Microbiol., Vol. 68, No. 8. (1 August 2002), pp. 3673-3682.
    by Andrew P Martin
    posted to diversity metagenomics phylogenetics by djkt on 2008-07-24 18:45:14 as read along with 4 people and 2 groups jmeppley Thaverkamp mcox Olaf_Ilzins Microbial-Ecology iSEEM
  • Testing for Differentiation of Microbial Communities Using Phylogenetic Methods: Accounting for Uncertainty of Phylogenetic Inference and Character State Mapping
    Microbial Ecology, Vol. 52, No. 3. (October 2006), pp. 408-417.
    by Jones, Ryan, Martin, Andrew
    posted to diversity metagenomics phylogenetics by djkt on 2008-07-24 18:44:28 as read along with 1 group iSEEM
  • Introducing TreeClimber, a test to compare microbial community structures.
    Applied and environmental microbiology, Vol. 72, No. 4. (April 2006), pp. 2379-2384.
    by PD Schloss, J Handelsman
    posted to diversity metagenomics phylogenetics by djkt on 2008-07-24 18:42:35 as read along with 1 person and 1 group mcox iSEEM
  • Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples.
    Applied and environmental microbiology, Vol. 67, No. 9. (September 2001), pp. 4374-4376.
    by DR Singleton, MA Furlong, SL Rathbun, WB Whitman
    posted to diversity ecology metagenomics rna by djkt on 2008-07-24 18:41:42 as read along with 1 person and 1 group mcox iSEEM
  • Integration of Microbial Ecology and Statistics: a Test To Compare Gene Libraries
    Appl. Environ. Microbiol., Vol. 70, No. 9. (1 September 2004), pp. 5485-5492.
    by Patrick D Schloss, Bret R Larget, Jo Handelsman
    posted to diversity ecology metagenomics microbes by djkt on 2008-07-24 18:39:36 as read along with 2 people and 1 group jmeppley mcox iSEEM
  • Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures.
    Applied and environmental microbiology, Vol. 72, No. 10. (October 2006), pp. 6773-6779.
    by PD Schloss, J Handelsman
    posted to diversity metagenomics phylogenetics by djkt on 2008-07-24 18:30:20 as read along with 1 person and 1 group sconlan iSEEM
  • Short pyrosequencing reads suffice for accurate microbial community analysis
    Nucl. Acids Res., Vol. 35, No. 18. (25 September 2007), e120.
    by Zongzhi Liu, Catherine Lozupone, Micah Hamady, Frederic D Bushman, Rob Knight
    posted to metagenomics sequencing by djkt on 2008-07-24 18:28:47 as read along with 3 people and 2 groups niallhaslam vrich jlgreen Green Lab iSEEM
  • Counting the Uncountable: Statistical Approaches to Estimating Microbial Diversity
    Appl. Environ. Microbiol., Vol. 67, No. 10. (1 October 2001), pp. 4399-4406.
    by Jennifer B Hughes, Jessica J Hellmann, Taylor H Ricketts, Brendan J Bohannan
    posted to diversity metagenomics review by djkt on 2008-07-24 18:27:30 as *** along with 6 people and 2 groups jmeppley Stenuite andrewirwin vrich mcox Olaf_Ilzins Biological oceanography iSEEM
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