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djkts library [443 articles]

Senaste artiklarna i djkts bibliotek.
  • Asymmetric histone modifications between the original and derived loci of human segmental duplications
    Genome Biology, Vol. 9, No. 7. (2008)
    by Deyou Zheng
    posted to human evolution epigenetics duplication by djkt on 2008-07-03 22:34:14 as **
  • Automated mapping of large-scale chromatin structure in ENCODE.
    Bioinformatics (Oxford, England) (30 June 2008)
    by Heng Lian, William A A Thompson, Robert Thurman, John A A Stamatoyannopoulos, William Stafford S Noble, Charles E E Lawrence
    posted to epigenetics annotation by djkt on 2008-07-03 22:27:20 as **
  • Dissecting direct reprogramming through integrative genomic analysis
    Nature (28 May 2008)
    by Tarjei S Mikkelsen, Jacob Hanna, Xiaolan Zhang, Manching Ku, Marius Wernig, Patrick Schorderet, Bradley E Bernstein, Rudolf Jaenisch, Eric S Lander, Alexander Meissner
    posted to stemcells expression epigenetics by djkt on 2008-07-02 22:32:26 as **
  • Identification and analysis of ancestral hominoid transcriptome inferred from cross-species transcript and processed pseudogene comparisons
    Genome Res., Vol. 18, No. 7. (1 July 2008), pp. 1163-1170.
    by Yao-Ting Huang, Feng-Chi Chen, Chiuan-Jung Chen, Hsin-Liang Chen, Trees-Juen Chuang
    posted to splicing primates expression evolution duplication by djkt on 2008-07-01 19:27:10 as ** along with 1 person dchughes
  • Two strategies for gene regulation by promoter nucleosomes
    Genome Res. (30 April 2008), gr.076059.108.
    by Itay Tirosh, Naama Barkai
    posted to yeast expression chromatin by djkt on 2008-07-01 19:20:59 as ** along with 7 people dchughes aalibes fpattyn vega emptyhb roys nklee
  • Evolutionary dynamics of segmental duplications from human Y-chromosomal euchromatin/heterochromatin transition regions
    Genome Res. (12 June 2008), gr.076711.108.
    by Stefan Kirsch, Claudia Munch, Zhaoshi Jiang, Ze Cheng, Lin Chen, Christiane Batz, Evan E Eichler, Werner Schempp
    posted to evolution duplication by djkt on 2008-07-01 19:18:35 as ** along with 1 person diamantis
  • A diversity profile of the human skin microbiota.
    Genome research (23 May 2008)
    by Elizabeth A A Grice, Heidi H H Kong, Gabriel Renaud, Alice C C Young, , Gerard G G Bouffard, Robert W W Blakesley, Tyra G G Wolfsberg, Maria L L Turner, Julia A A Segre
    posted to microbes metagenomics human by djkt on 2008-07-01 19:18:08 as ** along with 3 people sconlan caseybrown aprasad
  • Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals
    Genome Res., Vol. 18, No. 7. (1 July 2008), pp. 1020-1029.
    by Ines Hellmann, Yuan Mang, Zhiping Gu, Peter Li, de La, Andrew G Clark, Rasmus Nielsen
    posted to sequencing popgen human by djkt on 2008-07-01 19:13:57 as ** along with 4 people serdarbozdag balicea Neeperando APRegier
  • Mouse segmental duplication and copy number variation
    Nature Genetics, Vol. 40, No. 7. (22 May 2008), pp. 909-914.
    by Xinwei She, Ze Cheng, Sebastian Zöllner, Deanna M Church, Evan E Eichler
    posted to variation rodents duplication by djkt on 2008-06-27 20:02:36 as ** along with 1 person dchughes
  • Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation.
    Nature genetics (22 June 2008)
    by Kristi Kerkel, Alexandra Spadola, Eric Yuan, Jolanta Kosek, Le Jiang, Eldad Hod, Kerry Li, Vundavalli V V Murty, Nicole Schupf, Eric Vilain, Mitzi Morris, Fatemeh Haghighi, Benjamin Tycko
    posted to snps popgen epigenetics by djkt on 2008-06-27 20:01:22 as ** along with 2 people oelemento rschulz
  • Combinatorial patterns of histone acetylations and methylations in the human genome
    Nat Genet, Vol. 40, No. 7. (July 2008), pp. 897-903.
    by Zhibin Wang, Chongzhi Zang, Jeffrey A Rosenfeld, Dustin E Schones, Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Weiqun Peng, Michael Q Zhang, Keji Zhao
    posted to human expression epigenetics by djkt on 2008-06-27 19:58:40 as ** along with 2 people kengg kambiz
  • Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks.
    Nature genetics (15 June 2008)
    by Jun Zhu, Bin Zhang, Erin N N Smith, Becky Drees, Rachel B B Brem, Leonid Kruglyak, Roger E E Bumgarner, Eric E E Schadt
    posted to yeast sysbio by djkt on 2008-06-27 19:56:53 as ** along with 8 people marck roys jyuh realzhang kengg tmmurali ptrobajo maralena
  • Estimating coverage and power for genetic association studies using near-complete variation data
    Nat Genet, Vol. 40, No. 7. (July 2008), pp. 841-843.
    by Tushar R Bhangale, Mark J Rieder, Deborah A Nickerson
    posted to snps power popgen association by djkt on 2008-06-27 19:53:12 as ** along with 2 people jyuh caseybrown
  • Global Mapping of DNA Methylation in Mouse Promoters Reveals Epigenetic Reprogramming of Pluripotency Genes
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000116.
    by Cassandra R Farthing, Gabriella Ficz, Ray K Ng, Chun-Fung Chan, Simon Andrews, Wendy Dean, Myriam Hemberger, Wolf Reik
    posted to stemcells epigenetics by djkt on 2008-06-27 19:50:49 as ** along with 1 person Schmidtc
  • Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106.
    by Emily E Hare, Brant K Peterson, Venky N Iyer, Rudolf Meier, Michael B Eisen
    posted to tf fly expression evolution by djkt on 2008-06-27 19:47:07 as ** along with 5 people and 2 groups emptyhb pradiptaray cisevol caseybrown stajich cis-regulatory-evolution Berkeley Mycology
  • Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
    Nature (18 May 2008)
    by Brian T Wilhelm, Samuel Marguerat, Stephen Watt, Falk Schubert, Valerie Wood, Ian Goodhead, Christopher J Penkett, Jane Rogers, Jürg Bähler
    posted to yeast sequencing expression by djkt on 2008-06-25 22:00:06 as ** along with 2 people and 1 group GeeSharpMinor jonathanjacobs Molecular Biology
  • Tuning in to the signals: noncoding sequence conservation in vertebrate genomes
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Greg Elgar, Tanya Vavouri
    posted to conservation by djkt on 2008-06-22 18:10:45 as ** along with 2 people dchughes nklee
  • An Evolutionarily Conserved Sexual Signature in the Primate Brain
    PLoS Genet, Vol. 4, No. 6. (20 June 2008), e1000100.
    by Björn Reinius, Peter Saetre, Jennifer A Leonard, Ran Blekhman, Roxana Merino-Martinez, Yoav Gilad, Elena Jazin
    posted to primates expression divergence by djkt on 2008-06-21 01:17:33 as ** along with 1 person kambiz
  • A Drastic Reduction in the Life Span of Cystatin C L68Q Carriers Due to Life-Style Changes during the Last Two Centuries
    PLoS Genet, Vol. 4, No. 6. (20 June 2008), e1000099.
    by Astridur Palsdottir, Agnar Helgason, Snaebjorn Palsson, Hans T Bjornsson, Birkir T Bragason, Solveig Gretarsdottir, Unnur Thorsteinsdottir, Elias Olafsson, Kari Stefansson
    posted to popgen evolution ecology by djkt on 2008-06-21 01:14:54 as ** along with 1 person Schmidtc
  • Evaluating Statistical Methods Using Plasmode Data Sets in the Age of Massive Public Databases: An Illustration Using False Discovery Rates
    PLoS Genet, Vol. 4, No. 6. (20 June 2008), e1000098.
    by Gary L Gadbury, Qinfang Xiang, Lin Yang, Stephen Barnes, Grier P Page, David B Allison
    posted to mtp by djkt on 2008-06-21 01:13:25 as **
  • Evolution of Mammals and Their Gut Microbes
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1647-1651.
    by Ruth E Ley, Micah Hamady, Catherine Lozupone, Peter J Turnbaugh, Rob R Ramey, Stephen J Bircher, Michael L Schlegel, Tammy A Tucker, Mark D Schrenzel, Rob Knight, Jeffrey I Gordon
    posted to microbes metagenomics mammals evolution by djkt on 2008-06-20 16:34:54 as ** along with 3 people lp2 dchughes dinnes
  • Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1643-1647.
    by Rickard Sandberg, Joel R Neilson, Arup Sarma, Phillip A Sharp, Christopher B Burge
    posted to rna expression by djkt on 2008-06-20 16:34:08 as ** along with 4 people dchughes emptyhb bootsy lisa1
  • Natural Selection Shapes Genome-Wide Patterns of Copy-Number Polymorphism in Drosophila melanogaster
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1629-1631.
    by JJ Emerson, Margarida Cardoso-Moreira, Justin O Borevitz, Manyuan Long
    posted to sv selection popgen fly evolution by djkt on 2008-06-20 16:21:25 as ** along with 5 people Neeperando balicea APRegier skumagai dinnes
  • Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635.
    by Ari Loytynoja, Nick Goldman
    posted to phylogenetics msa evolution alignment by djkt on 2008-06-20 16:18:18 as ** along with 14 people and 1 group gulsacan Schmidtc bpb zwang aprasad imtechnology marck ArtemPankin gjuggler hpaces dinnes chad_davis jago phoenixzxl Khavkin's lab
  • Pervasive positive selection on duplicated and non duplicated vertebrate protein coding genes
    Genome Res. (18 June 2008), gr.076992.108.
    by Romain Studer, Laurent Duret, Simon Penel, Marc Robinson-Rechavi
    posted to selection proteins duplication by djkt on 2008-06-19 17:39:03 as **
  • From genes to functional classes in the study of biological systems
    BMC Bioinformatics, Vol. 8 (03 April 2007), 114.
    by Fatima Al-Shahrour, Leonardo Arbiza, Hernan Dopazo, Jaime Huerta-Cepas, Pablo Minguez, David Montaner, Joaquin Dopazo
    posted to selection go by djkt on 2008-06-19 17:27:56 as ** along with 5 people and 1 group jfr Sharpshoot ealloza ajw Garamonfok BioinfoCIPF
  • A simple method for calculating the statistical power for detecting a QTL located in a marker interval
    Heredity, Vol. aop, No. current.
    by Z Hu, S Xu
    posted to qtl power by djkt on 2008-06-18 19:04:25 as **
  • Use and misuse of the gene ontology annotations.
    Nature reviews. Genetics (13 May 2008)
    by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici
    posted to go annotation by djkt on 2008-06-18 19:03:28 as ** along with 18 people and 1 group marck capitall realzhang gjuggler A_Olympia fpattyn cmzmasek renatomilani giovenko tmmurali cabbagesofdoom ptrobajo RamuAnandakrishnan roys carlk mariakmejia aheilbut jyuh logics of knowledge
  • Recracking the nucleosome positioning code
    by Mark Segal
    posted to epigenetics by djkt on 2008-06-18 19:01:59 as **
  • Recurrent Deletion and Gene Presence/Absence Polymorphism: Telomere Dynamics Dominate Evolution at the Tip of 3L in Drosophila melanogaster and D. simulans
    Genetics, Vol. 179, No. 2. (1 June 2008), pp. 1021-1027.
    by Andrew D Kern, David J Begun
    posted to snps recombination indel fly by djkt on 2008-06-18 18:53:42 as **
  • Levels of Selection on Threshold Characters
    Genetics, Vol. 179, No. 2. (1 June 2008), pp. 899-905.
    by Jacob A Moorad, Timothy A Linksvayer
    posted to selection ptmass by djkt on 2008-06-18 18:50:03 as **
  • Complementary hierarchical clustering
    Biostat, Vol. 9, No. 3. (1 July 2008), pp. 467-483.
    by Gen Nowak, Robert Tibshirani
    posted to model_selection clustering by djkt on 2008-06-18 18:43:40 as **
  • Significance levels for studies with correlated test statistics.
    Biostatistics (18 December 2007)
    by Jianxin Shi, Douglas F F Levinson, Alice S S Whittemore
    posted to mtp by djkt on 2008-06-18 18:42:13 as ** along with 1 person jyuh
  • Mixture models with multiple levels, with application to the analysis of multifactor gene expression data.
    Biostatistics (5 February 2008)
    by Rebecka Jörnsten, Sündüz Keles
    posted to model_selection clustering by djkt on 2008-06-18 18:39:52 as ** along with 1 person lfdoherty
  • Linkage disequilibrium — understanding the evolutionary past and mapping the medical future
    Nature Reviews Genetics, Vol. 9, No. 6., pp. 477-485.
    by Montgomery Slatkin
    posted to review popgen human by djkt on 2008-06-18 17:32:32 as ** along with 3 people jyuh jasonflannick dchughes
  • Dynamics and Design Principles of a Basic Regulatory Architecture Controlling Metabolic Pathways
    PLoS Biology, Vol. 6, No. 6. (1 June 2008), e146.
    by Chen-Shan Chin, Victor Chubukov, Emmitt R Jolly, Joe Derisi, Hao Li
    posted to sysbio by djkt on 2008-06-17 21:37:38 as ** along with 4 people zwang jjray marck michaelbarton
  • Gene Duplication: A Drive for Phenotypic Diversity and Cause of Human Disease.
    Annu Rev Genomics Hum Genet (26 March 2007)
    by Bernard Conrad, Stylianos E E Antonarakis
    posted to evolution duplication by djkt on 2008-06-17 04:08:27 as ** along with 1 group Bioinformatics
  • Trends in Selenium Utilization in Marine Microbial World Revealed through the Analysis of the Global Ocean Sampling (GOS) Project
    PLoS Genet, Vol. 4, No. 6. (13 June 2008), e1000095.
    by Yan Zhang, Vadim N Gladyshev
    posted to metagenomics ecology by djkt on 2008-06-13 20:06:51 as ** along with 1 person xingxu
  • Positive selection drives a correlation between nonsynonymous/ synonymous divergence and functional divergence.
    Bioinformatics (Oxford, England) (28 April 2008)
    by Jacob A A Tennessen
    posted to proteins microbes evolution divergence by djkt on 2008-06-13 17:00:12 as ** along with 3 people APRegier Ema gjuggler
  • The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
    Science (1 May 2008), 1158441.
    by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder
    posted to yeast sequencing expression by djkt on 2008-06-10 22:31:03 as ** along with 7 people and 1 group semrich biomcgary chad_davis Retchless gjuggler caseybrown stajich Berkeley Mycology
  • Anticipatory Behavior Within Microbial Genetic Networks
    Science (8 May 2008), 1154456.
    by Ilias Tagkopoulos, Yir-Chung Liu, Saeed Tavazoie
    posted to network microbes evolution by djkt on 2008-06-10 22:27:33 as ** along with 7 people and 2 groups stringertheory dbikard deanmalmgren jjray skumagai roys brembs Centre de Recherches Interdisciplinaires Bacterial Genome Plasticity
  • Birth and Rapid Subcellular Adaptation of a Hominoid-Specific CDC14 Protein
    PLoS Biology, Vol. 6, No. 6. (1 June 2008), e140.
    by Lia Rosso, Ana C Marques, Manuela Weier, Nelle Lambert, Marie-Alexandra Lambot, Pierre Vanderhaeghen, Henrik Kaessmann
    posted to primates evolution duplication acceleration by djkt on 2008-06-10 20:41:41 as ** along with 1 person shoshin
  • CSMET: Comparative Genomic Motif Detection via Multi-Resolution Phylogenetic Shadowing
    PLoS Comput Biol, Vol. 4, No. 6. (6 June 2008), e1000090.
    by Pradipta Ray, Suyash Shringarpure, Mladen Kolar, Eric P Xing
    posted to tf msa evolution by djkt on 2008-06-07 19:41:58 as ** along with 3 people and 1 group Ema Stew cisevol cis-regulatory-evolution
  • Genome-Wide Analysis Reveals a Complex Pattern of Genomic Imprinting in Mice
    PLoS Genet, Vol. 4, No. 6. (6 June 2008), e1000091.
    by Jason B Wolf, James M Cheverud, Charles Roseman, Reinmar Hager
    posted to rodents imprinting by djkt on 2008-06-07 19:38:36 as ** along with 1 person clearbluespring
  • The Evolution of the DLK1-DIO3 Imprinted Domain in Mammals
    PLoS Biology, Vol. 6, No. 6. (1 June 2008), e135.
    by Carol A Edwards, Andrew J Mungall, Lucy Matthews, Edward Ryder, Dionne J Gray, Andrew J Pask, Geoffrey Shaw, Jennifer A Graves, Jane Rogers, Ian Dunham, Marilyn B Renfree, Anne C Ferguson-Smith
    posted to mammals imprinting evolution by djkt on 2008-06-04 02:23:21 as ** along with 1 person and 1 group stajich Berkeley Mycology
  • Identification of active transcriptional regulatory modules by the functional assay of DNA from nucleosome-free regions.
    Genome research (25 April 2008)
    by Mahesh Yaragatti, Claudio Basilico, Lisa Dailey
    posted to tf expression epigenetics annotation by djkt on 2008-06-03 06:25:13 as ** along with 1 person maximilianh
  • Genetic determinants of phenotypic diversity in humans
    Genome Biology, Vol. 9 (24 April 2008), 215.
    by Nazli G Rahim, Olivier Harismendy, Eric J Topol, Kelly A Frazer
    posted to review popgen human by djkt on 2008-06-03 05:56:58 as ** along with 1 person caseybrown
  • A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation
    by Sean Eddy
    posted to alignment by djkt on 2008-05-31 00:45:04 as **
  • Assessing the Evolutionary Impact of Amino Acid Mutations in the Human Genome
    posted to proteins human evolution by djkt on 2008-05-30 22:29:42 as **
  • Gene silencing in cancer by histone H3 lysine 27 trimethylation independent of promoter DNA methylation
    Nature Genetics, Vol. 40, No. 6. (18 May 2008), pp. 741-750.
    by Yutaka Kondo, Lanlan Shen, Alfred S Cheng, Saira Ahmed, Yanis Boumber, Chantale Charo, Tadanori Yamochi, Takeshi Urano, Koichi Furukawa, Bernard Kwabi-Addo, David L Gold, Yoshitaka Sekido, Tim H Huang, Jean-Pierre J Issa
    posted to chromatin chip-chip by djkt on 2008-05-29 18:35:55 as **
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