Registrera dig | Logga in | FAQ      [?] 
Recent | Unread | Search | Authors | Tags | Export

dimkas md [77 articles]

Senaste hänvisningarna i dimkas bibliotek insorterade under taggen md. You can also see everyone's md.
  • Molecular dynamics simulation of hydrated phospholipid bilayers.
    Indian journal of biochemistry & biophysics, Vol. 33, No. 6. (December 1996), pp. 431-447.
    by V Kothekar
    posted to simulation membrane md lipid dmpc by dimka on 2008-08-20 19:33:30 as **
  • Cholesterol Packing around Lipids with Saturated and Unsaturated Chains: A Simulation Study
    Langmuir (3 June 2008)
    by Sagar A Pandit, See-Wing Chiu, Eric Jakobsson, Ananth Grama, HL Scott
    posted to simulation md dopc cholesterol by dimka on 2008-08-18 22:53:18 as ** along with 2 people and 1 group sobolevnrm paulschlesinger baker-group
  • Effective Mast Cell Degranulating Peptide Inhibitors of the IgE/FcepsilonRI Receptor Interaction.
    Chemical biology & drug design (3 July 2008)
    by Angeliki Buku, Inna Keselman, Dmitry Lupyan, Mihaly Mezei, Joseph A A Price
    posted to simulation peptide md mcd ige-receptor ige by dimka on 2008-07-29 21:44:13 as ** along with 1 person yanz
  • Scalable Algorithms for Molecular Dynamics Simulations on Commodity Clusters
    Supercomputing, 2006. SC '06. Proceedings of the ACM/IEEE SC 2006 Conference (2006), pp. 43-43.
    by KJ Bowers, E Chow, Huafeng Xu, RO Dror, MP Eastwood, BA Gregersen, JL Klepeis, I Kolossvary, MA Moraes, FD Sacerdoti, JK Salmon, Yibing Shan, DE Shaw
    posted to md engine desmond algorithm by dimka on 2008-07-24 19:09:14 as **
  • Factors Influencing Local Membrane Curvature Induction by N-BAR Domains as Revealed by Molecular Dynamics Simulations
    Biophys. J. (9 May 2008), biophysj.107.121160.
    by Philip D Blood, Richard D Swenson, Gregory A Voth
    posted to pip2 md by dimka on 2008-07-24 18:37:03 as **
  • Mechanism of Na+/H+ Antiporting
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 799-803.
    by Isaiah T Arkin, Huafeng Xu, Morten O Jensen, Eyal Arbely, Estelle R Bennett, Kevin J Bowers, Edmond Chow, Ron O Dror, Michael P Eastwood, Ravenna Flitman-Tene, Brent A Gregersen, John L Klepeis, Istvan Kolossvary, Yibing Shan, David E Shaw
    posted to simulation membrane md desmond by dimka on 2008-07-08 21:34:50 as ** along with 4 people and 1 group sobolevnrm Jporci MMehrotra LamBras baker-group
  • Conformational Changes and Gating at the Selectivity Filter of Potassium Channels
    J. Am. Chem. Soc. (28 June 2008)
    by Carmen Domene, Michael L Klein, Davide Branduardi, Francesco L Gervasio, Michele Parrinello
    posted to simulation selectivity md lipids kirbac by dimka on 2008-07-01 00:10:09 as **
  • Lipid Bilayers Driven to a Wrong Lane in Molecular Dynamics Simulations by Subtle Changes in Long-Range Electrostatic Interactions
    J. Phys. Chem. B, Vol. 108, No. 14. (8 April 2004), pp. 4485-4494.
    by M Patra, M Karttunen, MT Hyvonen, E Falck, I Vattulainen
    posted to simulations md gromacs dppc by dimka on 2008-06-27 04:38:49 as ** along with 1 person softsimu
  • Outer membrane proteins: comparing X-ray and NMR structures by MD simulations in lipid bilayers
    European Biophysics Journal, Vol. 37, No. 2. (11 February 2008), pp. 131-141.
    by Katherine Cox, Peter Bond, Alessandro Grottesi, Marc Baaden, Mark Sansom
    posted to simulation protein membrane md compare by dimka on 2008-06-25 16:48:52 as **
  • Interactions of the Pleckstrin Homology Domain with Phosphatidylinositol Phosphate and Membranes: Characterization via Molecular Dynamics Simulations
    Biochemistry (15 March 2008)
    by Emi Psachoulia, Mark S Sansom
    posted to simulations protein-membrane protein-lipid protein-ligand phosphoinositides md inositiol by dimka on 2008-05-28 22:02:54 as ** along with 2 people choonpeng paulschlesinger
  • Essential dynamics of proteins.
    Proteins, Vol. 17, No. 4. (December 1993), pp. 412-425.
    by A Amadei, AB Linssen, HJ Berendsen
    posted to simulations pca md-analysis md dynamics by dimka on 2008-05-14 01:42:48 as ** along with 8 people and 1 group nigham baaden aqeel yongzhao ttjoseph ffranca allmensch carlescorbi TSRI_MGL
  • Simulaid
    http://atlas.physbio.mssm.edu/~mezei/simulaid/
    by Mihaly Mezei
    posted to simulaid md-analysis md analysis by dimka on 2008-05-14 01:35:17 as **
  • Conformational dynamics of the ligand-binding domain of inward rectifier K channels as revealed by molecular dynamics simulations: toward an understanding of Kir channel gating.
    Biophysical journal, Vol. 88, No. 5. (May 2005), pp. 3310-3320.
    by S Haider, A Grottesi, BA Hall, FM Ashcroft, MS Sansom
    posted to simulations md kir katp by dimka on 2008-05-14 00:48:45 as ** along with 1 person mengcite
  • Lipid Bilayer Perturbations around a Transmembrane Nanotube: A Coarse Grain Molecular Dynamics Study
    Biophys. J., Vol. 88, No. 6. (1 June 2005), pp. 3822-3828.
    by Steve O Nielsen, Bernd Ensing, Vanessa Ortiz, Preston B Moore, Michael L Klein
    posted to simulation perturbation nanotube md lipid by dimka on 2008-05-13 21:14:16 as ** along with 1 person loison
  • The MARTINI Force Field: Coarse Grained Model for Biomolecular Simulations.
    J Phys Chem B (15 June 2007)
    by Siewert J Marrink, H J Risselada, Serge Yefimov, D P Tieleman, Alex H Vries
    posted to simulations md force-field coarse-grain by dimka on 2008-05-13 21:10:45 as ** along with 3 people sunnytov choonpeng softsimu
  • Explicit ion, implicit water solvation for molecular dynamics of nucleic acids and highly charged molecules
    Journal of Computational Chemistry, Vol. 9999, No. 9999. (2007), NA.
    by Ninad V Prabhu, Manoranjan Panda, Qingyi Yang, Kim A Sharp
    posted to simulations md implicit-water charged by dimka on 2008-05-13 21:00:30 as ** along with 3 people and 1 group sobolevnrm RamuAnandakrishnan onufriev baker-group
  • Focus on Kir6.2: a key component of the ATP-sensitive potassium channel.
    Journal of molecular and cellular cardiology, Vol. 38, No. 6. (June 2005), pp. 927-936.
    by S Haider, JF Antcliff, P Proks, MS Sansom, FM Ashcroft
    posted to simulation md kir62 katp atp by dimka on 2008-05-09 21:33:30 as **
  • Molecular dynamics simulations of potassium channels
    Central European Journal of Chemistry, Vol. 5, No. 3. (2007), pp. 635-671.
    by Carmen Domene
    posted to simulation review md kir channels by dimka on 2008-05-08 23:28:34 as **
  • Sodium Coordination Site Reveals a Novel Sodium-Sensitive Phenotype in Kir Channels
    In Preparation (2008)
    by Avia Rosenhouse-Dantsker, Jun L Sui, Qu Zhao, Radda Rusinova, Diomedes E Logothetis
    posted to sodium md kir by dimka on 2008-05-08 16:56:32 as **
  • Molecular dynamics simulations of membrane proteins.
    Methods in molecular biology (Clifton, N.J.), Vol. 443 (2008), pp. 147-160.
    by PC Biggin, PJ Bond
    posted to simulations review membrane-protein md by dimka on 2008-05-01 15:18:37 as **
  • The Role of Conformation in Ion Permeation in a K+ Channel
    J. Am. Chem. Soc. (23 February 2008)
    by C Domene, S Vemparala, S Furini, K Sharp, ML Klein
    posted to kirbac11 lipid md permeation simulation by dimka on 2008-02-25 00:44:04 as **
  • Hydrogen Bonding and Binding of Polybasic Residues with Negatively Charged Mixed Lipid Monolayers.
    Langmuir (23 January 2008)
    by Christian D Lorenz, Jordi Faraudo, Alex Travesset
    posted to charmm dopc dops force-field lipid md membrane pip2 simulations by dimka on 2008-01-24 14:42:43 as **
  • Particle mesh Ewald: An N*log(N) method for Ewald sums in large systems
    Journal of Chemical Physics, Vol. 98, No. 12. (15 June 1993), pp. 10089-10092.
    by Tom Darden, Darrin York, Lee Pedersen
    posted to md methods pme by dimka on 2008-01-08 00:17:58 as **
  • Molecular Dynamics Simulations of Ternary Membrane Mixture: Phosphatidylcholine, Phosphatidic Acid, and Cholesterol.
    J Phys Chem B (5 December 2007)
    by Mary H Cheng, Lu T Liu, Alexander C Saladino, Yan Xu, Pei Tang
    posted to lipid md membrane mixture simulations by dimka on 2007-12-11 00:17:42 as ** along with 2 people and 1 group sobolevnrm easybakemuffin baker-group
  • Dynamics of the Kv1.2 Voltage-Gated K+ Channel in a Membrane Environment
    Biophys. J., Vol. 93, No. 9. (1 November 2007), pp. 3070-3082.
    by Vishwanath Jogini, Benoit Roux
    posted to kv12 md membrane potential simulations voltage by dimka on 2007-11-29 19:32:56 as ** along with 1 person paulschlesinger
  • Dynamic Relationships among Type IIa Bacteriocins: Temperature Effects on Antimicrobial Activity and on Structure of the C-Terminal Amphipathic Alpha-Helix as a Receptor-Binding Region
    Biochemistry, Vol. 43, No. 28. (20 July 2004), pp. 9009-9020.
    by K Kaur, LC Andrew, DS Wishart, JC Vederas
    posted to folding md peptide simulation by dimka on 2007-11-20 20:30:34 as **
  • The structure of ghrelin.
    Vitam Horm, Vol. 77 (2007), pp. 1-12.
    by A Kukol
    posted to md peptide simulations by dimka on 2007-11-10 02:14:55 as **
  • Electrostatic interactions in phospholipid membranes revealed by coherent 2D IR spectroscopy
    Proceedings of the National Academy of Sciences, Vol. 104, No. 39. (25 September 2007), pp. 15323-15327.
    by VV Volkov, R Chelli, W Zhuang, F Nuti, Y Takaoka, AM Papini, S Mukamel, R Righini
    posted to dmpc experimental lipid md membrane simulation by dimka on 2007-10-31 15:52:35 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Molecular dynamics simulations and membrane protein structure quality
    European Biophysics Journal, Vol. 37 (25 October 2007), pp. 403-409.
    by Anthony Ivetac, Mark Sansom
    posted to md membrane-protein review simulations by dimka on 2007-10-28 00:17:27 as **
  • Association free energy of dipalmitoylphosphatidylserines in a mixed dipalmitoylphosphatidylcholine membrane.
    Biophys J, Vol. 92, No. 9. (1 May 2007), pp. 3071-3080.
    by Y Rodríguez, M Mezei, R Osman
    posted to dppc dpps fep free-energy md membrane perturbation simulations by dimka on 2007-10-03 19:15:53 as **
  • Identification of the PIP2-binding site on Kir6.2 by molecular modelling and functional analysis
    The EMBO Journal, Vol. aop, No. current. (02 August 2007)
    by Shozeb Haider, Andrei I Tarasov, Tim J Craig, Mark SP Sansom, Frances M Ashcroft
    posted to kir62 md pip2 simulations by dimka on 2007-08-10 20:52:39 as **
  • The signaling pathway of rhodopsin.
    Structure, Vol. 15, No. 5. (May 2007), pp. 611-623.
    by Y Kong, M Karplus
    posted to analysis md by dimka on 2007-07-27 17:17:32 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Phase Transition of a DPPC Bilayer Induced by an External Surface Pressure: From Bilayer to Monolayer Behavior. A Molecular Dynamics Simulation Study
    Langmuir, Vol. 22, No. 13. (20 June 2006), pp. 5818-5824.
    by JJ Lopezcascales, TF Otero, AJ Fernandezromero, L Camacho
    posted to dppc md simulations by dimka on 2007-07-25 00:34:07 as **
  • Short range order and collective dynamics of DMPC bilayers. A comparison between molecular dynamics simulations, x-ray, and neutron scattering experiments
    Biophys. J. (13 July 2007), biophysj.107.104885.
    by Jochen S Hub, Tim Salditt, Maikel C Rheinstadter, Bert L de Groot
    posted to dmpc lipid md membrane by dimka on 2007-07-22 06:40:35 as ** along with 3 people and 1 group sobolevnrm char paulschlesinger baker-group
  • Molecular Dynamics Simulations of C-Terminal Decapeptide of Gastrin-Releasing Peptide in DMPC Bilayers: Structure, Stability and Orientation of the Peptide Hormone Within the Bilayers
    Protein and Peptide Letters, Vol. 14, No. 6. (June 2007), pp. 590-596.
    by Priyanka Prakash, , Ramasubbu Sankararamakrishnan,
    posted to dmpc lipid md membrane pro by dimka on 2007-07-22 06:28:44 as **
  • Dynamite extended: two new services to simplify protein dynamic analysis
    Bioinformatics, Vol. 21, No. 14. (15 July 2005), pp. 3174-3175.
    by Paul C Barrett, Martin E Noble
    posted to dynanics ied md pca trajectory by dimka on 2007-05-30 03:59:09 as **
  • Dynamite: a simple way to gain insight into protein motions
    Acta Crystallographica Section D: Biological Crystallography, Vol. 60, No. 1. (01 December 2004), pp. 2280-2287.
    by CP Barrett, BA Hall, MEM Noble
    posted to ied md pca server by dimka on 2007-05-30 03:57:33 as ** along with 3 people and 1 group aqeel yongzhao choonpeng TSRI_MGL
  • A generalized born implicit-membrane representation compared to experimental insertion free energies.
    Biophys J, Vol. 92, No. 7. (1 April 2007), pp. 2338-2349.
    by MB Ulmschneider, JP Ulmschneider, MS Sansom, A Di Nola
    posted to gb gromacs implicit-membrane md membrane-effect by dimka on 2007-05-18 22:24:45 as ** along with 1 person onufriev
  • Molecular dynamics simulation of an archaeal lipid bilayer with sodium chloride.
    Phys Chem Chem Phys, Vol. 9, No. 5. (7 February 2007), pp. 643-650.
    by K Shinoda, W Shinoda, M Mikami
    posted to lipid md membrane simulations by dimka on 2007-04-26 04:11:50 as **
  • Molecular Dynamics Simulations of Inwardly Rectifying (Kir) Potassium Channels: A Comparative Study.
    Biochemistry (28 February 2007)
    by Shozeb Haider, Syma Khalid, Stephen J Tucker, Frances M Ashcroft, Mark S Sansom
    posted to md kir62 kir31 kir11 homology by dimka on 2007-03-08 21:35:29 as ** along with 1 person jenni_p
  • A consensus view of protein dynamics.
    Proc Natl Acad Sci U S A (10 January 2007)
    by Manuel Rueda, Carles Ferrer-Costa, Tim Meyer, Alberto Pérez, Jordi Camps, Adam Hospital, Josep Lluis L Gelpí, Modesto Orozco
    posted to benchmark md simulation by dimka on 2007-02-19 23:50:00 as ** along with 12 people and 2 groups LamBras lna aqeel aswin rabio grahamc hmk zwang biehl Ema phoenixzxl ras ParkinsonLab_at_MaRS The BMM Dome
  • Convergence of molecular dynamics simulations of membrane proteins.
    Proteins (22 January 2007)
    by Alan Grossfield, Scott E E Feller, Michael C C Pitman
    posted to md membrane pca rhodopsin simulations by dimka on 2007-01-25 17:54:43 as ** along with 2 people nigham RamuAnandakrishnan
  • Molecular simulation study of the influence of small molecules on the dynamic and structural properties of phospholipid bilayers.
    Chem Biodivers, Vol. 2, No. 11. (November 2005), pp. 1503-1516.
    by AK Sum
    posted to lipid md membrane by dimka on 2007-01-03 18:36:19 as ** along with 1 person softsimu
  • Using cryo-EM to measure the dipole potential of a lipid membrane.
    Proc Natl Acad Sci U S A, Vol. 103, No. 49. (5 December 2006), pp. 18528-18533.
    by L Wang, PS Bose, FJ Sigworth
    posted to cryo-em lipid md by dimka on 2006-12-13 21:22:10 as **
  • Molecular dynamics simulation of a palmitoyl-oleoyl phosphatidylserine bilayer with Na+ counterions and NaCl.
    Biophys J, Vol. 86, No. 3. (March 2004), pp. 1601-1609.
    by P Mukhopadhyay, L Monticelli, DP Tieleman
    posted to bilayer lipid md membrane pops properties by dimka on 2006-12-11 01:32:28 as ** along with 3 people robertvacha easybakemuffin softsimu
  • MD simulation of asymmetric phospholipid bilayers with ions and cholesterols
    Chem-Bio Informatics Journal, Vol. 4, No. 1. (2004), pp. 15-26.
    by Kenichi Mori, Masayuki Hata, Saburo Neya, Tyuji Hoshino
    posted to asymmetry bilayer chlesterol lipids md popc pope pops by dimka on 2006-12-10 23:36:30 as ***
  • Dynamics in atomistic simulations of phospholipid membranes: Nuclear magnetic resonance relaxation rates and lateral diffusion.
    J Chem Phys, Vol. 125, No. 20. (28 November 2006)
    by J Wohlert, O Edholm
    posted to diffusion dppc lipid md membrane nmr by dimka on 2006-12-07 18:43:57 as **
  • Atomistic simulations of biologically realistic transmembrane potential gradients.
    J Chem Phys, Vol. 121, No. 22. (8 December 2004), pp. 10847-10851.
    by JN Sachs, PS Crozier, TB Woolf
    posted to ion lipid md membrane membrane_potential by dimka on 2006-11-10 22:28:44 as **
  • Mechanism of Intracellular Block of the KcsA K(+) Channel by Tetrabutylammonium: Insights from X-ray Crystallography, Electrophysiology and Replica-exchange Molecular Dynamics Simulations.
    J Mol Biol, Vol. 365 (29 January 2007), pp. 649-662.
    by José DD Faraldo-Gómez, Esin Kutluay, Vishwanath Jogini, Yanxiang Zhao, Lise Heginbotham, Benoît Roux
    posted to electrophysiology kcsa md by dimka on 2006-11-10 05:44:58 as **
  • Molecular Modelling: Principles and Applications (2nd Edition)
    (30 March 2001)
    by Andrew Leach
    posted to book leach md reference by dimka on 2006-09-26 23:56:20 as ** along with 4 people and 1 group yoel_rf choonpeng sobolevnrm samtam baker-group
    • Du kan hänvisa till den här sidan som: http://www.citeulike.org/user/dimka/tag/md

    Result page: 1 2 Next RIS BibTeX