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dgronts library [443 articles]

Senaste artiklarna i dgronts bibliotek.
  • A Solution for the Best Rotation to Relate Two Sets of Vectors.
    Acta Crystallographica, Vol. 32 (1976), pp. 922-923.
    by W Kabsch
    posted to structure-similarity by dgront on 2008-08-23 22:03:29 as read
  • Prediction of the structure of symmetrical protein assemblies
    Proceedings of the National Academy of Sciences (31 October 2007), 0702626104.
    by Ingemar Andre, Philip Bradley, Chu Wang, David Baker
    posted to experimental_restraints comparative_modeling by dgront on 2008-08-21 22:18:31 as ***** along with 5 people and 2 groups jwm jmrivort cjeans zwang sobolevnrm Supramolecular baker-group
  • Consistent blind protein structure generation from NMR chemical shift data
    Proceedings of the National Academy of Sciences, Vol. 105, No. 12. (25 March 2008), pp. 4685-4690.
    by Yang Shen, Oliver Lange, Frank Delaglio, Paolo Rossi, James M Aramini, Gaohua Liu, Alexander Eletsky, Yibing Wu, Kiran K Singarapu, Alexander Lemak, Alexandr Ignatchenko, Cheryl H Arrowsmith, Thomas Szyperski, Gaetano T Montelione, David Baker, Ad Bax
    posted to protein_structure nmr experimental_restraints by dgront on 2008-08-21 21:38:43 as ***** along with 5 people and 1 group apaydin zwang biehl sunhwan skoddet Nielsen group
  • Pcons5: combining consensus, structural evaluation and fold recognition scores
    Bioinformatics, Vol. 21, No. 23. (1 December 2005), pp. 4248-4254.
    by Bjorn Wallner, Arne Elofsson
    posted to threading by dgront on 2008-07-08 16:44:52 as read
  • CATHEDRAL: A Fast and Effective Algorithm to Predict Folds and Domain Boundaries from Multidomain Protein Structures
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e232.
    by Oliver C Redfern, Andrew Harrison, Tim Dallman, Frances M Pearl, Christine A Orengo
    posted to protein_structure domain-parsing by dgront on 2008-07-07 21:43:07 as **** along with 2 people kluck Ema
  • PDP: protein domain parser.
    Bioinformatics, Vol. 19, No. 3. (12 February 2003), pp. 429-430.
    by N Alexandrov, I Shindyalov
    posted to protein_structure domain-parsing by dgront on 2008-07-07 21:37:04 as read along with 1 person iakes
  • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
    Nat Genet, Vol. 25, No. 1. (May 2000), pp. 25-29.
    by M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
    posted to gene-ontology by dgront on 2008-06-30 19:02:01 as read along with 34 people and 6 groups fongenae rvosa roys marck carlk pablomendes CitoJam aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele FAB-lab kdl Bioinformatics EisenLab T_lab biomedical-nlp
  • Creating the gene ontology resource: design and implementation.
    Genome Res, Vol. 11, No. 8. (August 2001), pp. 1425-1433.
    by
    posted to gene-ontology by dgront on 2008-06-30 18:49:32 as read along with 5 people and 1 group marck CitoJam helliontroy sgoetz PunkRock biomedical-nlp
  • Continuous in Vitro Evolution of Catalytic Function
    Science, Vol. 276, No. 5312. (25 April 1997), pp. 614-617.
    by Martin C Wright, Gerald F Joyce
    posted to experimental evolution by dgront on 2008-06-24 22:45:13 as read
  • From The Origin of Species to the origin of bacterial flagella
    Nature Reviews Microbiology, Vol. 4, No. 10. (05 September 2006), pp. 784-790.
    by Mark J Pallen, Nicholas J Matzke
    posted to evolution by dgront on 2008-06-24 21:57:12 as read along with 4 people and 1 group choonpeng matzke jryanstevens adria TNT
  • Influence of conservation on calculations of amino acid covariance in multiple sequence alignments.
    Proteins, Vol. 56, No. 2. (1 August 2004), pp. 211-221.
    by AA Fodor, RW Aldrich
    posted to function-prediction correlated-mutations by dgront on 2008-06-24 21:28:00 as read along with 6 people and 2 groups Lombardo_7 ana gbart cjeans jlh64 mingzhi structural_bioinformatics Bioinformatics
  • An algorithm for progressive multiple alignment of sequences with insertions
    PNAS, Vol. 102, No. 30. (26 July 2005), pp. 10557-10562.
    by Ari Loytynoja, Nick Goldman
    posted to sequence_alignment by dgront on 2008-06-24 20:19:53 as read along with 5 people and 1 group bpcusack hpaces stevanspringer timflutre gjuggler FAB-lab
  • Relating protein pharmacology by ligand chemistry
    Nature Biotechnology, Vol. 25, No. 2. (07 February 2007), pp. 197-206.
    by Michael J Keiser, Bryan L Roth, Blaine N Armbruster, Paul Ernsberger, John J Irwin, Brian K Shoichet
    posted to drug-discovery chemoinformatics by dgront on 2008-06-23 17:51:34 as read along with 6 people jerome_ucsf_slb massivemayhem Yanno tjimenez kuhn daevans
  • Clustered sequence representation for fast homology search.
    Journal of computational biology : a journal of computational molecular cell biology, Vol. 14, No. 5. (June 2007), pp. 594-614.
    by M Cameron, Y Bernstein, HE Williams
    posted to sequence_alignment data_processing clustering by dgront on 2008-06-20 18:06:30 as read
  • Information theory analysis of the relationship between primary sequence structure and ligand recognition among a class of facilitated transporters
    Journal of Theoretical Biology, Vol. 174, No. 2. (21 May 1995), pp. 179-188.
    by Rufus M Williamson
    posted to residue-conservation msa-analysis by dgront on 2008-06-18 18:12:14 as read
  • The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Jonathan Manning, Emily Jefferson, Geoffrey Barton
    posted to residue-conservation msa-analysis function-prediction by dgront on 2008-06-18 17:54:00 as read along with 2 people and 1 group laughcry sobolevnrm baker-group
  • Predicting functionally important residues from sequence conservation
    Bioinformatics (22 May 2007), btm270.
    by John A Capra, Mona Singh
    posted to residue-conservation msa-analysis function-prediction by dgront on 2008-06-18 17:47:53 as read along with 7 people and 2 groups grahamc azazello zwang cabbagezs Jporci niallhaslam santiago ParkinsonLab_at_MaRS MBLAB
  • Hearing silence: non-neutral evolution at synonymous sites in mammals
    Nature Reviews Genetics, Vol. 7, No. 2. (2006), pp. 98-108.
    by JV Chamary, Joanna L Parmley, Laurence D Hurst
    posted to review evolution by dgront on 2008-05-27 14:40:48 as read along with 5 people and 1 group BioNica ejeffery gpalidwor i000 massivemayhem YY1
  • SCIENCE COMMUNICATION: Public Acceptance of Evolution
    Science, Vol. 313, No. 5788. (11 August 2006), pp. 765-766.
    by Jon D Miller, Eugenie C Scott, Shinji Okamoto
    posted to evolution by dgront on 2008-03-27 22:07:53 as ** along with 6 people and 3 groups rebeccamancy Borelli dayjm chad_davis dchughes cmm FAB-lab G4ID Genetics-of-Gambling
  • Utility library for structural bioinformatics.
    Bioinformatics, Vol. 24, No. 4. (28 January 2008), pp. 584-585.
    by Dominik Gront, Andrzej Kolinski
    posted to my_own tools by dgront on 2008-03-27 16:11:07 as read along with 3 people chad_davis rabio Minty
  • Kullback-Leibler divergence for evaluating bioequivalence.
    Stat Med, Vol. 22, No. 6. (30 March 2003), pp. 913-930.
    by V Dragalin, V Fedorov, S Patterson, B Jones
    posted to statistics by dgront on 2008-03-24 21:50:47 as read
  • A physically meaningful method for the comparison of potential energy functions
    Journal of Computational Chemistry, Vol. 27, No. 2. (2006), pp. 238-252.
    by José L Alonso, Pablo Echenique
    posted to force_field by dgront on 2008-03-20 22:21:05 as read along with 1 person qwermish
  • The global trace graph, a novel paradigm for searching protein sequence databases.
    Bioinformatics, Vol. 23, No. 18. (15 September 2007), pp. 2361-2367.
    by A Heger, S Mallick, C Wilton, L Holm
    posted to graph_theory sequence_alignment by dgront on 2008-03-20 22:04:15 as read
  • De Novo Computational Design of Retro-Aldol Enzymes
    Science, Vol. 319, No. 5868. (7 March 2008), pp. 1387-1391.
    by Lin Jiang, Eric A Althoff, Fernando R Clemente, Lindsey Doyle, Daniela Rothlisberger, Alexandre Zanghellini, Jasmine L Gallaher, Jamie L Betker, Fujie Tanaka, Carlos F Barbas, Donald Hilvert, Kendall N Houk, Barry L Stoddard, David Baker
    posted to experimental protein_design by dgront on 2008-03-20 21:47:46 as read along with 12 people and 3 groups cambray joseph_x_zhou ucbcjbm barry aalibes jwm aprasad zwang sobolevnrm davidlott msuarezdiez scienbox McCammon structural_bioinformatics baker-group
  • Protein crystallography for non-crystallographers, or how to get the best (but not more) from published macromolecular structures
    FEBS Journal, Vol. 275, No. 1. (2008), pp. 1-21.
    by Alexander Wlodawer, Wladek Minor, Zbigniew Dauter, Mariusz Jaskolski
    posted to experimental review xray by dgront on 2008-03-20 21:15:50 as read
  • Variable Kernel Density Estimation
    The Annals of Statistics, Vol. 20, No. 3. (1992), pp. 1236-1265.
    by George R Terrell, David W Scott
    posted to statistics by dgront on 2008-03-03 20:03:01 as **
  • Smoothing by Local Regression: Principles and Methods
    (1996), pp. 10-49.
    by WS Cleveland, CL Loader
    edited by W Haerdle, MG Schimek
    posted to regression review statistics by dgront on 2008-02-29 19:53:27 as *****
  • Data-Based Choice of Histogram Bin Width
    The American Statistician, Vol. 51, No. 1. (1997), pp. 59-64.
    by MP Wand
    posted to review statistics by dgront on 2008-02-29 19:41:55 as read along with 2 people and 1 group brian garyfeng ReadingLab
  • Nonparametric Density Estimation: Toward Computational Tractability
    (2003)
    by AG Gray, AW Moore
    posted to algorithms statistics by dgront on 2008-02-26 21:43:33 as read along with 1 person daniel51
  • Five Balltree Construction Algorithms
    (December 1989)
    by Stephen M Omohundro
    posted to algorithms by dgront on 2008-02-26 21:28:49 as read
  • Protein backbone angle prediction with machine learning approaches.
    Bioinformatics, Vol. 20, No. 10. (10 July 2004), pp. 1612-1621.
    by R Kuang, CS Leslie, AS Yang
    posted to backbone by dgront on 2008-02-08 23:00:48 as **
  • Adaptive Kernel Density Estimation
    Stata Journal, Vol. 3 (2003), pp. 148-156.
    by S Sain
    posted to statistics by dgront on 2008-02-06 03:34:49 as read along with 2 people and 1 group brian garyfeng ReadingLab
  • Cyclic coordinate descent: A robotics algorithm for protein loop closure.
    Protein Sci, Vol. 12, No. 5. (May 2003), pp. 963-972.
    by AA Canutescu, RL Dunbrack
    posted to loop_modeling simulation_methods by dgront on 2008-01-24 22:09:12 as read along with 4 people and 1 group vavi yongzhao j3xucite mijam TSRI_MGL
  • Nearest-Neighbor Clutter Removal for Estimating Features in Spatial Point Processes
    Journal of the American Statistical Association, Vol. 93, No. 442. (1998), pp. 577-584.
    by Simon Byers, Adrian E Raftery
    posted to clustering statistics by dgront on 2008-01-21 02:28:23 as read
  • Model-Based Clustering, Discriminant Analysis, and Density Estimation
    pp. 611-631.
    by Fraley, C.
    posted to clustering review statistics by dgront on 2008-01-20 20:44:39 as read along with 3 people and 2 groups ctacmo bayes akastrin Statistics_and_Social_Science Biostatistics
  • Bayesian Regularization for Normal Mixture Estimation and Model-Based Clustering
    Journal of Classification, Vol. 24 (2007), pp. 155-181.
    by Chris Fraley, Adrian E Raftery
    posted to clustering statistics by dgront on 2008-01-20 20:40:11 as read
  • A global geometric framework for nonlinear dimensionality reduction.
    Science, Vol. 290, No. 5500. (22 December 2000), pp. 2319-2323.
    by JB Tenenbaum, V de Silva, JC Langford
    posted to data_processing by dgront on 2008-01-19 18:20:24 as read along with 15 people and 4 groups matjes aufrank k12u yas metamerist yama_tah tag mthomure sdvillal voiklis dwf DavidSchulz teesid jung_dalglish mctor ur-cls T_lab metric_embeddings ColDyn
  • Nonlinear Dimensionality Reduction by Locally Linear Embedding
    Science, Vol. 290, No. 5500. (22 December 2000), pp. 2323-2326.
    by Sam T Roweis, Lawrence K Saul
    posted to data_processing by dgront on 2008-01-19 18:06:41 as read along with 16 people and 4 groups eddymier matjes amargoli yaroslavvb gangli yas yama_tah filippone tag sdvillal walkking jguinney kenji4569 DavidSchulz mdramirez mctor tulip T_lab metric_embeddings Computer_Graphics
  • The penultimate rotamer library
    Proteins: Structure, Function, and Genetics, Vol. 40, No. 3. (2000), pp. 389-408.
    by Simon C Lovell, Michael J Word, Jane S Richardson, David C Richardson
    posted to atom_reconstruction rotamers by dgront on 2008-01-17 19:35:29 as read along with 2 people kazemi mijam
  • "Multi-Dimensional Density Estimation"
    (2004), pp. 229-263.
    by DW Scott, SR Sain
    edited by CR Rao, EJ Wegman
    posted to statistics by dgront on 2008-01-15 16:24:55 as read
  • Bayesian statistical analysis of protein side-chain rotamer preferences.
    Protein Sci, Vol. 6, No. 8. (August 1997), pp. 1661-1681.
    by RL Dunbrack, FE Cohen
    posted to bayesian rotamers by dgront on 2007-12-28 22:49:57 as read along with 10 people and 1 group jwm karbak nknii j3xucite blackbart kazemi rsantana hmk LamBras mijam TCR_Signaling
  • Evaluation of coarse grained models for hydrogen bonds in proteins.
    J Comput Chem (13 February 2007)
    by David De Sancho, Antonio Rey
    posted to force_field by dgront on 2007-12-16 17:54:50 as ***** along with 2 people choonpeng mijam
  • Structure validation by Calpha geometry: phi,psi and Cbeta deviation.
    Proteins, Vol. 50, No. 3. (15 February 2003), pp. 437-450.
    by SC Lovell, IW Davis, WB Arendall, P de Bakker, JM Word, MG Prisant, JS Richardson, DC Richardson
    posted to ramachandran protein_structure by dgront on 2007-12-14 23:29:53 as ** along with 7 people and 2 groups pavanghatty aqeel jwm robert xiaobeizhao martainn mijam Radiation_Damage Stressosome
  • Bayesian statistical studies of the Ramachandran distribution.
    Stat Appl Genet Mol Biol, Vol. 4 (2005)
    by A Pertsemlidis, J Zelinka, JW Fondon, RK Henderson, Z Otwinowski
    posted to ramachandran force_field bayesian by dgront on 2007-12-14 22:38:42 as read
  • The Impact of Structural Genomics: Expectations and Outcomes
    Science, Vol. 311, No. 5759. (20 January 2006), pp. 347-351.
    by John-Marc Chandonia, Steven E Brenner
    posted to review structural_genomics by dgront on 2007-12-14 22:24:03 as read along with 9 people and 2 groups tjimenez bicko balajis marcius tny penka anwazo insectopalo selrac BioinfoCIPF SGU-CIPF
  • Evaluating Regularizers for Estimating Distributions of Amino Acids
    (1995)
    by K Karplus
    posted to sequence_alignment by dgront on 2007-11-26 19:45:18 as read
  • Speeding-Up Hierarchical Agglomerative Clustering in Presence of Expensive Metrics
    Advances in Knowledge Discovery and Data Mining (2005), pp. 378-387.
    by Mirco Nanni
    posted to algorithms clustering by dgront on 2007-11-19 21:14:08 as read
  • Fast hierarchical clustering and other applications of dynamic closest pairs
    J. Exp. Algorithmics, Vol. 5 (2000)
    by David Eppstein
    posted to algorithms clustering by dgront on 2007-11-19 20:53:52 as **
  • A multidimensional version of the Kolmogorov-Smirnov test
    Monthly Notices of the Royal Astronomical Society, Vol. 225 (1987), pp. 155-170.
    by G Fasano, A Franceschini
    posted to statistics by dgront on 2007-11-17 01:26:30 as ***** along with 718 people and 131 groups rwilliamson motchy rpbharti MariaChiaraP dconnelly maburkitt eisenmaj davidchavalarias 6rheology amydash dcastro boellernadja nafets sbaete steveut pathari alexispaz fghjorth tanneama000 ricckli iarmac laurabailey wolfe275 tkravitz pulsus-morbi Gaetan EsepBib jakobl ablam tbolt427 kungcc wartaalman austin Langster ezaydens Scis0000002 Axis jeanbean melody jsenn christiankissig psique scarcelan balicea danzinde gi0rgi0ne Stepstep abdulpur nlauzier mirweis christian_librarian skumagai nkishan squirmelia carterb Corbasson IanBrown malkav30 sarahmccrum gkvas freddan jago giolakat kndiaye gvandyk1 wongmld Neeperando duckysherwood yungyuc murb midshipman ranger vrich taenneken pdessus Repton nikko LTrottier mfloris hrwiltse scottkb ThomasKluge fernand0 dperkel egh jyuh samth sora florine ladygoat hopm hellige parmentierf ssn mortimer tinkha V plaugg ansobol mjaz berthelemy eldan pdlug zephoria carloscabanillas Janos bkliethermes nazareno elsantosneto januadiaboli yaroslavvb jurijmlotman geomblog srl bigga treycausey CSG mcphee chandrashekar denns matzke sherrivokey sona cassj lijil hlovise coolger incites bigmagpie alicetiara yorgos johannsen cavlec smbrower viller jenmy mlzafron tymmail sedging davidr macowell eimaj42jdp Flit BenWillems agallet hawesie sngourlay jolilius rmagf acer ville garyfeng danifazzio willwade gantlord melanieramage mgregg cwb neteler carneym crispinb rdlong lillekatt davemack agarza carsonr imcdnzl tjimenez Tolik lna dmikurube szityu michmill mamadoudiao kaniko applebyb joni2am P2324548 jpbenda Vaccine tadm mkwalker anar grzegorz japple planetoid okarsligil stormybriggs UWerplab nbr inbetweener pafmon stina pgastrein xiruela kutabar jfr xamde kliether mleis jshahin cmunson lfriedl sharonhoward ccots terraces czlamer brent_lance subhradeep jjray Jellyfish cmmorel bayesian benavides ghsalazar manuelpq sekulerlab jmaryott kristina chad_davis Ayest thens RMGraze e2holmes JAShapiro contradictoryben lrodero jamesfournie nybon hawkestein diegolino_veneziano rvosa Schmidtc lyongu ricmilne KarinaFigueroa jfmenudet cdmilligan great_apes brthz juliajumeau gloinf billwolff mrkrause halsnalle pintman yish mkcerusky cyph3r idm smithco ruudvanleeuwen BarrosH aelva harshpshah earnoux princessbritty Laki kupopo ryang eustatic daqing stain matts ram frankgrimes Pfaff9 locatellimp seawidget ianli kate_waxlyrical rherring ThomasEtEckert cliona shaun gregnishihara harmonjt Happybene jklugman mwyarbro rburnett prabakaran nperrin tystl gugek NicolasNeubauer gytisc Nele pedagogicapprentice dlouzeck phillipkent emerson rafamayo arichar6 pasion sadsackmac gbae redcourgette sunilbajpai JJNonesuch heintz BuckeyePhysicist bretblosser charlesijones term madhadron ypeter cmm agraham yijisoo jberro peaksun balabu djsaab crumj garypearce rinelk plashkes PaulB charlescearl p2p-sec langec tuaba os252 JonathanFeinberg jingliu dvoigt hywel tshr isorhiza foistudy jenine donade kmcolo fisherp voiklis insilico fitzgeraldsteele junoda sumeetonweb familydoc craigtalbert dmitri83 dmboyer martint RalphPutnam atsu-kan hlwoodcock reta gogabr smmurphy rafabravo dabhishe JennaW hisashim cjones chuggins Sulpicus ranb alikocho hiromark gane5h l-alex rdiaz pilho ueberweise wangsd echinotrix ak Odi bezbozhnik todchambers perceptron wasteland93 yizheng stephane-jean mahlow mbaric mtr anon_pl dir289 lanubile fcalefato dpeeler QFRMC xwenlong johncumbers kgronemyer keitokita hkl pervane mpennell kedmond mfisk brusilovsky gregflanders hgamboa pgeymueller last5laps jbrown nathanielvirgo rwm101 ChristianGraf marohn davetown101 barbz79it naturecure edgarbc muellerkind fugitive joshuashen aviad_work crusher lucbelanger lauragonzalez Manhal gagliol ashandanj lns cblock trungdong lechristophe ealloza s-adachi rsabouni dhingra corcoted Shii vrv fmiyamae livingthingdan kaz229 Haggan knowlengr aniak krzywy tg Rootfruit ricklillie gracev lrsantos babyone eenauk 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nmaisonneuve powell digamberjuwekar cmcleod grieth isys1186 aartaki polyparadigm rodney portalqm bangb cdm jeanfou CareyNadell teh zwang shivakmr prerona michaelmampaey mick39 dagmar bellia akom kevin7 friveroll khm zetetic karipuf leechuck hp2oo1 jenda_z ngrandy andreacapocci ghunter Maderlock shizhao dayadvham monientiedt rebeccamancy calamar c-gobert baniel jborn dmschneid tale chrisatcite mloewer hanxiansheng rlai jasonbobe ggorjan zeppe AlisonBabeu eprzekwa J_Raff fornstar yodha Akimasa technical oilpalm spacely j0nes TCgroup ingedwar Oktoplus stonest cwr jladell rbmoura Leize adjih carpi omidf2 msampson olaf markusd paulschlesinger qwermish librain pkrrules thehajime PeterRabbit paulvb cvq peefeeyatko kinestetika lynleypage truongducthang metaspencer dodger042 jpassoth krokicki tibbitts brianlimyl vogmae doylem hayko gjhuang ashko buggle bemike cvarnam umurthy21 andregermanoregert Katje tgyork ivanois toivotuo jnz snyder84 idonaldson dandaman awc Thaverkamp mtugrul buchgeher 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AssistiveTechnology Bioinformatics mathgamespatterns MACLab folksonomy Neuroscience VisionLab Personal-Information-Management CMS Stoc_Proc_Ecology_WG LanguageAndBrain BrainTheory dtl hdm id vds-arg ALF DPR EvolutionaryComputation STS infovis 2ndFloor fammed-publichealth AI eni Biofluid FAB-lab DSS NeuralNetworks mobilecomputing tmig_psycho RETA SITCRC CDG cliamte_change folk_epistemology instaar_graduate_students Projet_ENSIMAG climate_change BUiGEM social_navigation Macroelectronics ARC04 The_Truants