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dandamans library [234 articles]

Senaste artiklarna i dandamans bibliotek.
  • Improved Detection of Overrepresentation of Gene-Ontology Annotations with Parent-Child Analysis.
    Bioinformatics (11 September 2007)
    by Steffen Grossmann, Sebastian Bauer, Peter N N Robinson, Martin Vingron
    posted to go enrichment_analysis by dandaman on 2008-10-07 16:06:27 as ** along with 6 people tmmurali sgoetz grahamc heliopais RamuAnandakrishnan marck
  • A wheat cold-regulated cDNA encoding an early light-inducible protein (ELIP): its structure, expression and chromosomal location.
    Plant & cell physiology, Vol. 40, No. 3. (March 1999), pp. 319-325.
    by E Shimosaka, T Sasanuma, H Handa
    posted to elips cold_acclimation by dandaman on 2008-10-04 22:15:29 as **
  • Homology a personal view on some of the problems.
    Trends Genet, Vol. 16, No. 5. (May 2000), pp. 227-231.
    by WM Fitch
    posted to homology gene_evolution gene_duplication evolution by dandaman on 2008-09-26 11:31:11 as ** along with 1 person AaronDarling
  • Reconstructing the duplication history of tandemly repeated genes.
    Molecular biology and evolution, Vol. 19, No. 3. (March 2002), pp. 278-288.
    by O Elemento, O Gascuel, MP Lefranc
    posted to tandem_arrayed_genes by dandaman on 2008-09-26 11:07:11 as **
  • BranchClust: A phylogenetic algorithm for selecting gene families
    BMC Bioinformatics, Vol. 8 (10 April 2007), 120.
    by Maria S Poptsova, Peter J Gogarten
    posted to phylogenomics phylogenetic_methods ortholog_prediction by dandaman on 2008-09-26 10:46:17 as ** along with 2 people and 2 groups rvosa stajich FAB-lab Berkeley Mycology
  • Effect of 5'UTR introns on gene expression in Arabidopsis thaliana.
    BMC Genomics, Vol. 7 (2006)
    by BY Chung, C Simons, AE Firth, CM Brown, RP Hellens
    posted to introns gene_evolution gene by dandaman on 2008-09-25 12:55:16 as ** along with 2 people byy bertelsen
  • Stress activation and genomic impact of Tnt1 retrotransposons in Solanaceae.
    Cytogenet Genome Res, Vol. 110, No. 1-4. (2005), pp. 229-241.
    by MA Grandbastien, C Audeon, E Bonnivard, JM Casacuberta, B Chalhoub, AP Costa, QH Le, D Melayah, M Petit, C Poncet, SM Tam, MA Van Sluys, C Mhiri
    posted to transposons stress by dandaman on 2008-09-23 10:15:56 as ** along with 1 person ArtemPankin
  • Phylogenetic analysis and seasonal cold acclimation-associated expression of early light-induced protein genes of Rhododendron catawbiense
    Physiologia Plantarum, Vol. 132, No. 1. (January 2008), pp. 44-52.
    by Peng, Yanhui, Lin, Wuling, Wei, Hui, Krebs, L Stephen, Arora, Rajeev
    posted to elips by dandaman on 2008-09-23 08:15:27 as **
  • Retrotransposons and siRNA have a role in the evolution of desiccation tolerance leading to resurrection of the plant Craterostigma plantagineum
    New Phytologist, Vol. 179, No. 3. (August 2008), pp. 877-887.
    by Hilbricht, Tobias, Varotto, Serena, Sgaramella, Vittorio, Bartels, Dorothea, Salamini, Francesco, Furini, Antonella
    posted to elips by dandaman on 2008-09-23 08:15:08 as **
  • Comparison of gene targeting efficiencies in two mosses suggests that it is a conserved feature of Bryophyte transformation.
    Biotechnology letters, Vol. 29, No. 10. (October 2007), pp. 1591-1598.
    by B Trouiller, F Charlot, S Choinard, DG Schaefer, F Nogué
    posted to homologous_recombination by dandaman on 2008-09-22 21:57:32 as **
  • Subfunctionalization of duplicated genes as a transition state to neofunctionalization.
    BMC Evol Biol, Vol. 5, No. 1. (14 April 2005)
    by S Rastogi, DA Liberles
    posted to gene_duplication by dandaman on 2008-09-19 15:21:46 as ** along with 1 person pansapiens
  • Size and complexity among multicellular organisms
    Biological Journal of the Linnean Society, Vol. 60, No. 3. (1997), pp. 345-363.
    by Graham Bell, Arne O Mooers
    posted to organismal_complexity by dandaman on 2008-09-16 12:43:40 as ** along with 1 person cmzmasek
  • Quantifying organismal complexity using a population genetic approach.
    PLoS ONE, Vol. 2, No. 2. (2007)
    by O Tenaillon, OK Silander, JP Uzan, L Chao
    posted to organismal_complexity by dandaman on 2008-09-15 15:34:56 as **
  • Identification of genes expressed in the Arabidopsis female gametophyte
    The Plant Journal, Vol. 51, No. 2. (July 2007), pp. 281-292.
    by Steffen, G Joshua, Kang, Il-Ho, Macfarlane, Jane, Drews, N Gary
    posted to gametophyte by dandaman on 2008-09-05 11:23:47 as **
  • Evolution of plant microRNAs and their targets
    Trends in Plant Science, Vol. 13, No. 7. (July 2008), pp. 343-349.
    by Michael J Axtell, John L Bowman
    posted to mirna by dandaman on 2008-09-03 15:55:29 as ** along with 1 person tolot27
  • Translational Repression Dependent on the Interaction of the Xenopus Y-box Protein FRGY2 with mRNA. ROLE OF THE COLD SHOCK DOMAIN, TAIL DOMAIN, AND SELECTIVE RNA SEQUENCE RECOGNITION
    J. Biol. Chem., Vol. 271, No. 37. (13 September 1996), pp. 22706-22712.
    by Ken Matsumoto, Funda Meric, Alan P Wolffe
    posted to translation_inhibition frgy2 by dandaman on 2008-09-03 15:27:42 as **
  • RNA-binding strategies common to cold-shock domain- and RNA recognition motif-containing proteins
    Nucl. Acids Res., Vol. 29, No. 11. (1 June 2001), pp. 2223-2233.
    by Xavier Manival, Laurence Ghisolfi-Nieto, Gerard Joseph, Philippe Bouvet, Monique Erard
    posted to translation_inhibition frgy2 by dandaman on 2008-09-03 14:33:15 as **
  • Visualization of the reconstituted FRGY2-mRNA complexes by electron microscopy.
    Biochemical and biophysical research communications, Vol. 306, No. 1. (20 June 2003), pp. 53-58.
    by K Matsumoto, KJ Tanaka, K Aoki, M Sameshima, M Tsujimoto
    posted to translation_inhibition frgy2 by dandaman on 2008-09-03 14:31:03 as **
  • NAB1 is an RNA binding protein involved in the light-regulated differential expression of the light-harvesting antenna of Chlamydomonas reinhardtii.
    The Plant cell, Vol. 17, No. 12. (December 2005), pp. 3409-3421.
    by JH Mussgnug, L Wobbe, I Elles, C Claus, M Hamilton, A Fink, U Kahmann, A Kapazoglou, CW Mullineaux, M Hippler, J Nickelsen, PJ Nixon, O Kruse
    posted to translation_inhibition lhc by dandaman on 2008-09-03 14:22:50 as **
  • Sexual Life Cycle of Three Species of Funariaceae in Culture
    The Bryologist, Vol. 81, No. 2. (1978), pp. 307-314.
    by Paula C Nakosteen, Karen W Hughes
    posted to culture funariaceae live_cycle physcomitrella by dandaman on 2008-08-26 11:43:25 as **
  • Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D.
    Nature, Vol. 428, No. 6983. (8 April 2004), pp. 653-657.
    by M Matsuzaki, O Misumi, T Shin-I, S Maruyama, M Takahara, SY Miyagishima, T Mori, K Nishida, F Yagisawa, K Nishida, Y Yoshida, Y Nishimura, S Nakao, T Kobayashi, Y Momoyama, T Higashiyama, A Minoda, M Sano, H Nomoto, K Oishi, H Hayashi, F Ohta, S Nishizaka, S Haga, S Miura, T Morishita, Y Kabeya, K Terasawa, Y Suzuki, Y Ishii, S Asakawa, H Takano, N Ohta, H Kuroiwa, K Tanaka, N Shimizu, S Sugano, N Sato, H Nozaki, N Ogasawara, Y Kohara, T Kuroiwa
    posted to cyanidioschyzon genome_paper by dandaman on 2008-08-26 11:19:11 as ** along with 2 people Cortel jwm
  • Translational regulation of light-harvesting complex expression during photoacclimation to high-light in Chlamydomonas reinhardtii
    Plant Physiology and Biochemistry, Vol. 44, No. 11-12. ( 2006), pp. 857-865.
    by SM Mckim, DG Durnford
    posted to lhc photoacclimation photosynthesis by dandaman on 2008-08-22 09:21:09 as **
  • State transitions revisited—a buffering system for dynamic low light acclimation of Arabidopsis
    Plant Molecular Biology, Vol. 62, No. 4. (1 November 2006), pp. 779-793.
    by Tikkanen Mikko, Piippo Mirva, Suorsa Marjaana, Sirpiö Sari, Mulo Paula, Vainonen Julia, Vener Alexander, Allahverdiyeva Yagut, Aro Eva-Mari
    posted to lhc state_transitions by dandaman on 2008-08-22 09:05:36 as **
  • Slow molecular evolution in 18S rDNA, rbcL and nad5 genes of mosses compared with higher plants.
    Journal of evolutionary biology, Vol. 21, No. 2. (March 2008), pp. 566-571.
    by HK Stenøien
    posted to evolutionary_rates moss by dandaman on 2008-08-14 20:54:48 as **
  • RESISTANCE GENE COMPLEXES: Evolution and Utilization
    Annual Review of Phytopathology, Vol. 39, No. 1. (2001), pp. 285-312.
    by Scot H Hulbert, Craig A Webb, Shavannor M Smith, Qing Sun
    posted to concerted_evolution gene_conversion tandem_arrayed_genes by dandaman on 2008-08-12 15:36:01 as **
  • Chlorophyll and carotenoid binding in a simple red algal light-harvesting complex crosses phylogenetic lines.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 5. (27 February 2001), pp. 2911-2916.
    by B Grabowski, FX Cunningham, E Gantt
    posted to lhc rhodophyta by dandaman on 2008-08-12 12:06:07 as **
  • Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae.
    Microbiol Mol Biol Rev, Vol. 63, No. 2. (June 1999), pp. 349-404.
    by F Pâques, JE Haber
    posted to gene_conversion recombination by dandaman on 2008-08-12 08:12:14 as ** along with 1 person ecattell
  • Finely orchestrated movements: evolution of the ribosomal RNA genes.
    Genetics, Vol. 175, No. 2. (February 2007), pp. 477-485.
    by TH Eickbush, DG Eickbush
    posted to concerted_evolution gene_conversion rdna tandem_arrayed_genes by dandaman on 2008-08-09 13:04:53 as **
  • Tandem gene arrays: a challenge for functional genomics
    Trends in Plant Science, Vol. 12, No. 5. (May 2007), pp. 203-210.
    by Georg Jander, Carina Barth
    posted to tandem_arrayed_genes by dandaman on 2008-07-30 16:44:22 as **
  • Tandem genes and clustered genes
    Journal of Theoretical Biology, Vol. 175, No. 1. (7 July 1995), pp. 71-87.
    by Geoffrey J Graham
    posted to tandem_arrayed_genes concerted_evolution gene_conversion by dandaman on 2008-07-30 16:42:09 as **
  • Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa)
    Gene, Vol. 394, No. 1-2. (1 June 2007), pp. 13-24.
    by Dekai Wang, Kemei Pei, Yaping Fu, Zongxiu Sun, Sujuan Li, Heqin Liu, Kan Tang, Bin Han, Yuezhi Tao
    posted to arf by dandaman on 2008-07-30 14:30:09 as **
  • Fractionation of Synteny in a Genomic Region Containing Tandemly Duplicated Genes across Glycine max, Medicago truncatula, and Arabidopsis thaliana
    J Hered, Vol. 99, No. 4. (1 January 2008), pp. 390-395.
    by Jessica A Schlueter, Brian E Scheffler, Scott Jackson, Randy C Shoemaker
    posted to concerted_evolution gene_conversion tandem_arrayed_genes by dandaman on 2008-07-30 14:27:21 as **
  • Natural history and evolutionary principles of gene duplication in fungi
    Nature, Vol. 449, No. 7158., pp. 54-61.
    by Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev
    posted to gene_duplication gene_evolution by dandaman on 2008-07-30 14:24:38 as ** along with 13 people and 4 groups aheilbut dpollard tny dchughes djkt stajich zwang biomcgary lp2 tzhughes maximilianh pkm bpcusack EisenLab G4ID Genetics-of-Gambling Berkeley Mycology
  • Tissue-specific gene silencing mediated by a naturally occurring chalcone synthase gene cluster in Glycine max.
    The Plant cell, Vol. 16, No. 4. (April 2004), pp. 819-835.
    by JH Tuteja, SJ Clough, WC Chan, LO Vodkin
    posted to gene_conversion ptgs tandem_arrayed_genes by dandaman on 2008-07-30 14:20:51 as **
  • Concerted evolution: molecular mechanism and biological implications.
    American journal of human genetics, Vol. 64, No. 1. (January 1999), pp. 24-30.
    by D Liao
    posted to concerted_evolution gene_conversion by dandaman on 2008-07-30 13:45:30 as **
  • The age of the earliest club mosses: the Silurian Baragwanathia flora in Victoria, Australia
    Geological Magazine, Vol. 137, No. 2. (1 March 2000), pp. 207-209.
    by RB Rickards
    posted to fossil_record by dandaman on 2008-07-24 15:38:11 as ** along with 1 person ms609
  • THE EARLIEST VASCULAR PLANT OR A LATER ROOTING SYSTEM? PINNATIRAMOSUS QIANENSIS FROM THE MARINE LOWER SILURIAN XIUSHAN FORMATION, GUIZHOU PROVINCE, CHINA
    Palaios, Vol. 22, No. 2. (1 March 2007), pp. 155-165.
    by Dianne Edwards, WANG Yi, Michael G Bassett, Li CHENG Sen
    posted to fossil_record by dandaman on 2008-07-24 15:35:26 as **
  • Morphologically complex plant macrofossils from the Late Silurian of Arctic Canada
    Am. J. Bot., Vol. 89, No. 6. (1 June 2002), pp. 1004-1013.
    by Michele E Kotyk, James F Basinger, Patricia G Gensel, Tim A de Freitas
    posted to fossil_record by dandaman on 2008-07-24 15:32:15 as **
  • Genetic diversity of Nostoc symbionts endophytically associated with two bryophyte species.
    Applied and environmental microbiology, Vol. 67, No. 9. (September 2001), pp. 4393-4396.
    by JL Costa, P Paulsrud, J Rikkinen, P Lindblad
    posted to bryophyte hornworts liverworts symbiosis by dandaman on 2008-07-22 16:42:28 as **
  • Nested Containment List (NCList): A new algorithm for accelerating interval query of genome alignment and interval databases
    Bioinformatics (18 January 2007), btl647.
    by Alexander V Alekseyenko, Christopher J Lee
    posted to algorithms databases data_structures by dandaman on 2008-07-22 14:27:45 as ** along with 1 person and 1 group stajich Berkeley Mycology
  • Pseudoallelism and gene evolution.
    Cold Spring Harbor symposia on quantitative biology, Vol. 16 (1951), pp. 159-174.
    by EB LEWIS
    posted to pseudoalleles by dandaman on 2008-07-10 10:05:49 as **
  • E. B. Lewis and the Bithorax Complex: Part I
    Genetics, Vol. 160, No. 4. (1 April 2002), pp. 1265-1272.
    by Ian Duncan, Geoffrey Montgomery
    posted to pseudoalleles by dandaman on 2008-07-10 07:09:02 as **
  • Earth's oldest liverworts--Metzgeriothallus sharonae sp. nov. from the Middle Devonian (Givetian) of eastern New York, USA
    Review of Palaeobotany and Palynology, Vol. In Press, Accepted Manuscript
    by Van Aller, Ed Landing, Kenneth E Bartowski
    posted to evolution fossil_record liverworts by dandaman on 2008-07-02 10:29:49 as **
  • Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana
    Science, Vol. 317, No. 5836. (20 July 2007), pp. 338-342.
    by Richard M Clark, Gabriele Schweikert, Christopher Toomajian, Stephan Ossowski, Georg Zeller, Paul Shinn, Norman Warthmann, Tina T Hu, Glenn Fu, David A Hinds, Huaming Chen, Kelly A Frazer, Daniel H Huson, Bernhard Scholkopf, Magnus Nordborg, Gunnar Ratsch, Joseph R Ecker, Detlef Weigel
    posted to population_genomics variation by dandaman on 2008-07-01 13:20:37 as ** along with 4 people and 1 group GeeSharpMinor xwbcn sstoma braingrind VirtualPlants
  • The biology of bryophytes--bryophytes aren't just small tracheophytes
    Am. J. Bot., Vol. 88, No. 11. (1 November 2001), pp. 2129-2131.
    by Brent D Mishler
    posted to bryophyte evolution moss by dandaman on 2008-06-29 18:35:10 as **
  • Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins.
    Plant Cell, Vol. 16, No. 1. (January 2004), pp. 241-256.
    by JL Heazlewood, JS Tonti-Filippini, AM Gout, DA Day, J Whelan, AH Millar
    posted to targeting by dandaman on 2008-06-20 11:41:17 as ** along with 1 person raiyar
  • Sorting Signals, N-Terminal Modifications and Abundance of the Chloroplast Proteome
    PLoS ONE, Vol. 3, No. 4. (23 April 2008), e1994.
    by Boris Zybailov, Heidi Rutschow, Giulia Friso, Andrea Rudella, Olof Emanuelsson, Qi Sun, Klaas J van Wijk
    posted to plastid targeting by dandaman on 2008-06-20 11:32:41 as ** along with 1 person smit2jam
  • Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes.
    Biology letters (3 June 2008)
    by Fabien Burki, Kamran Shalchian-Tabrizi, Jan Pawlowski
    posted to evolution planta plastid_evolution by dandaman on 2008-06-19 08:11:10 as **
  • Reconstructing evolution: gene transfer from plastids to the nucleus.
    BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 30, No. 6. (June 2008), pp. 556-566.
    by R Bock, JN Timmis
    posted to egt endosymbiosis plastid_evolution by dandaman on 2008-06-19 08:10:23 as **
  • Chlamydiae has contributed at least 55 genes to Plantae with predominantly plastid functions.
    PLoS ONE, Vol. 3, No. 5. (2008)
    by A Moustafa, A Reyes-Prieto, D Bhattacharya
    posted to endosymbiosis plastid_evolution by dandaman on 2008-06-19 08:09:36 as ** along with 1 person ahmedmoustafa
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