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caseybrowns chip [26 articles]

Senaste hänvisningarna i caseybrowns bibliotek insorterade under taggen chip. You can also see everyone's chip.
  • Modeling ChIP Sequencing In Silico with Applications
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000158.
    by Zhengdong D Zhang, Joel Rozowsky, Michael Snyder, Joseph Chang, Mark Gerstein
    posted to chip sequencing short_read_analysis by caseybrown on 2008-08-31 20:42:30 as ** along with 5 people aramesh2 djkt kengg Stew gdb
  • Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
    Cell, Vol. 133, No. 6. (13 June 2008), pp. 1106-1117.
    by Xi Chen, Han Xu, Ping Yuan, Fang Fang, Mikael Huss, Vinsensius B Vega, Eleanor Wong, Yuriy L Orlov, Weiwei Zhang, Jianming Jiang, Yuin-Han Loh, Hock C Yeo, Zhen X Yeo, Vipin Narang, Kunde R Govindarajan, Bernard Leong, Atif Shahab, Yijun Ruan, Guillaume Bourque, Wing-Kin Sung, Neil D Clarke, Chia-Lin Wei, Huck-Hui Ng
    posted to chip es_cell sequencing by caseybrown on 2008-07-03 23:21:06 as ** along with 4 people jjray inesdesantiago kengg gdb
  • Binding sites for metabolic disease related transcription factors inferred at base pair resolution by chromatin immunoprecipitation and genomic microarrays
    Hum. Mol. Genet., Vol. 14, No. 22. (15 November 2005), pp. 3435-3447.
    by Alvaro Rada-Iglesias, Ola Wallerman, Christoph Koch, Adam Ameur, Stefan Enroth, Gayle Clelland, Kenneth Wester, Sarah Wilcox, Oliver M Dovey, Peter D Ellis, Vicki L Wraight, Keith James, Rob Andrews, Cordelia Langford, Pawandeep Dhami, Nigel Carter, David Vetrie, Fredrik Ponten, Jan Komorowski, Ian Dunham, Claes Wadelius
    posted to chip liver by caseybrown on 2008-04-26 16:23:24 as **
  • Hepatocyte nuclear factor 4alpha orchestrates expression of cell adhesion proteins during the epithelial transformation of the developing liver.
    Proc Natl Acad Sci U S A, Vol. 103, No. 22. (30 May 2006), pp. 8419-8424.
    by MA Battle, G Konopka, F Parviz, AL Gaggl, C Yang, FM Sladek, SA Duncan
    posted to chip liver mouse by caseybrown on 2008-04-26 16:19:29 as ** along with 1 person duncanswi
  • Genomic Maps and Comparative Analysis of Histone Modifications in Human and Mouse
    Cell, Vol. 120, No. 2. (28 January 2005), pp. 169-181.
    by Bradley E Bernstein, Michael Kamal, Kerstin Lindblad-Toh, Stefan Bekiranov, Dione K Bailey, Dana J Huebert, Scott Mcmahon, Elinor K Karlsson, Edward J Kulbokas, Thomas R Gingeras, Stuart L Schreiber, Eric S Lander
    posted to chip chromatin method mouse by caseybrown on 2008-04-20 21:58:25 as ** along with 4 people olympos jasonflannick inesdesantiago dquest
  • Normalization and experimental design for ChIP-chip data
    BMC Bioinformatics, Vol. 8 (25 June 2007), 219.
    by Shouyong Peng, Artyom A Alekseyenko, Erica Larschan, Mitzi I Kuroda, Peter J Park
    posted to chip method by caseybrown on 2008-04-17 05:41:54 as read along with 5 people and 2 groups jyuh kengg Stew yevishere baldigroup EisenLab Plantandetc
  • Serum response factor binding sites differ in three human cell types
    Genome Res., Vol. 17, No. 2. (1 February 2007), pp. 136-144.
    by Sara J Cooper, Nathan D Trinklein, Loan Nguyen, Richard M Myers
    posted to chip cisreg promoter by caseybrown on 2008-04-12 20:38:15 as read along with 1 person and 1 group indigoviolet EisenLab
  • High-throughput Biochemical Analysis of in-vivo Location Data Reveals Novel Classes of POU5F1(Oct4)/DNA complexes.
    Genome Res (22 January 2008)
    by Dean Tantin, Matt Gemberling, Catherine Callister, Will Fairbrother
    posted to chip cisreg method by caseybrown on 2008-04-01 22:33:51 as ** along with 2 people maximilianh xingxu
  • Using ChIP-chip technology to reveal common principles of transcriptional repression in normal and cancer cells
    Genome Res. (17 March 2008), gr.074609.107.
    by Vitalina M Komashko, Luis G Acevedo, Sharon L Squazzo, Sushma S Iyengar, Alina Rabinovich, Henriette O'Geen, Roland Green, Peggy J Farnham
    posted to chip cisreg expression_array by caseybrown on 2008-03-17 21:54:43 as **
  • Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.
    Nat Genet (4 February 2007)
    by Nathaniel D D Heintzman, Rhona K K Stuart, Gary Hon, Yutao Fu, Christina W W Ching, R David D Hawkins, Leah O O Barrera, Sara Van Calcar, Chunxu Qu, Keith A A Ching, Wei Wang, Zhiping Weng, Roland D D Green, Gregory E E Crawford, Bing Ren
    posted to chip chromatin cisreg promoter by caseybrown on 2008-03-16 14:58:30 as read along with 7 people and 2 groups kengg djkt mgaldzic olympos skoch3 epigenetics inesdesantiago CHIP Plantandetc
  • Tissue-specific transcriptional regulation has diverged significantly between human and mouse
    Nature Genetics, Vol. 39, No. 6. (21 May 2007), pp. 730-732.
    by Duncan T Odom, Robin D Dowell, Elizabeth S Jacobsen, William Gordon, Timothy W Danford, Kenzie D Macisaac, Alexander P Rolfe, Caitlin M Conboy, David K Gifford, Ernest Fraenkel
    posted to chip cisreg molevol transcription by caseybrown on 2008-02-13 14:31:31 as read along with 10 people and 4 groups dpollard gpalidwor dchughes cwbrown djkt cjeans maximilianh fpattyn yevishere gdb EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm
    PLoS Biology, Vol. 6, No. 2. (1 February 2008), e27.
    by Xiao-Yong Li, Stewart Macarthur, Richard Bourgon, David Nix, Daniel A Pollard, Venky N Iyer, Aaron Hechmer, Lisa Simirenko, Mark Stapleton, Cris L Hendriks, Hou C Chu, Nobuo Ogawa, William Inwood, Victor Sementchenko, Amy Beaton, Richard Weiszmann, Susan E Celniker, David W Knowles, Tom Gingeras, Terence P Speed, Michael B Eisen, Mark D Biggin
    posted to chip cisreg melanogaster by caseybrown on 2008-02-12 14:29:56 as read along with 7 people and 1 group kengg maximilianh emptyhb brant isimpson gdb Stew Jarman Lab
  • Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
    Genome Res. (7 February 2008), gr.7080508.
    by David S Johnson, Wei Li, Benjamin D Gordon, Arindam Bhattacharjee, Bo Curry, Jayati Ghosh, Leonardo Brizuela, Jason S Carroll, Myles Brown, Paul Flicek, Christopher M Koch, Ian Dunham, Mark Bieda, Xiaoqin Xu, Peggy J Farnham, Philipp Kapranov, David A Nix, Thomas R Gingeras, Xinmin Zhang, Heather Holster, Nan Jiang, Roland Green, Jun S Song, Scott A Mccuine, Elizabeth Anton, Loan Nguyen, Nathan D Trinklein, Zhen Ye, Keith Ching, David Hawkins, Bing Ren, Peter C Scacheri, Joel Rozowsky, Alexander Karpikov, Ghia Euskirchen, Sherman Weissman, Mark Gerstein, Michael Snyder, Annie Yang, Zarmik Moqtaderi, Heather Hirsch, Hennady P Shulha, Yutao Fu, Zhiping Weng, Kevin Struhl, Richard M Myers, Jason D Lieb, Shirley X Liu
    posted to chip by caseybrown on 2008-02-11 14:29:02 as read along with 11 people and 2 groups jfr kengg djkt xiaobeizhao cabbagezs idonaldson magusina lp2 stajich gracio gdb BergmanLab Berkeley Mycology
  • TileMap: create chromosomal map of tiling array hybridizations
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3629-3636.
    by Hongkai Ji, Wing H Wong
    posted to chip by caseybrown on 2008-02-10 18:03:04 as ** along with 3 people tuck dquest inesdesantiago
  • Genome-wide mapping of the cohesin complex in the yeast Saccharomyces cerevisiae.
    PLoS Biol, Vol. 2, No. 9. (September 2004)
    by EF Glynn, PC Megee, HG Yu, C Mistrot, E Unal, DE Koshland, JL DeRisi, JL Gerton
    posted to chip by caseybrown on 2008-02-10 17:55:23 as ** along with 1 person and 1 group kengg Plantandetc
  • ChIP-chip: Data, Model, and Analysis
    Biometrics, Vol. 63, No. 3. (September 2007), pp. 787-796.
    by Zheng, Ming, Barrera, O Leah, Ren, Bing, Wu, Ying Nian
    posted to chip by caseybrown on 2008-02-09 22:51:38 as ** along with 1 person jyuh
  • Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts
    BMC Bioinformatics, Vol. 8 (26 June 2007), 221.
    by Joern Toedling, Oleg Sklyar, Wolfgang Huber
    posted to chip by caseybrown on 2008-02-09 21:40:50 as read along with 6 people jyuh jfr ghattem hpaces inesdesantiago bryankr
  • High-resolution computational models of genome binding events
    Nature Biotechnology, Vol. 24, No. 8. (09 August 2006), pp. 963-970.
    by Yuan Qi, Alex Rolfe, Kenzie D Macisaac, Georg K Gerber, Dmitry Pokholok, Julia Zeitlinger, Timothy Danford, Robin D Dowell, Ernest Fraenkel, Tommi S Jaakkola, Richard A Young, David K Gifford
    posted to chip by caseybrown on 2008-02-09 20:21:50 as read along with 4 people jfr wnpx ccr inesdesantiago
  • Tilescope: online analysis pipeline for high-density tiling microarray data
    Genome Biology, Vol. 8 (14 May 2007), R81.
    by Zhengdong D Zhang, Joel Rozowsky, Hugo YK Lam, Jiang Du, Michael Snyder, Mark Gerstein
    posted to chip by caseybrown on 2008-02-09 20:15:09 as read along with 3 people jfr inesdesantiago GeeSharpMinor
  • Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome
    Genome Res., Vol. 16, No. 5. (1 May 2006), pp. 595-605.
    by Mark Bieda, Xiaoqin Xu, Michael A Singer, Roland Green, Peggy J Farnham
    posted to chip by caseybrown on 2008-02-09 20:00:09 as read along with 1 person djkt
  • Mixture Modeling for Genome-Wide Localization of Transcription Factors
    Biometrics, Vol. 63, No. 1. (March 2007), pp. 10-21.
    by Keles, Sunduz
    posted to chip by caseybrown on 2008-02-09 19:35:35 as read
  • A Flexible and Powerful Bayesian Hierarchical Model for ChIP-Chip Experiments
    Biometrics, Vol. 0, No. 0. (0), pp. ???-???.
    by Raphael Gottardo, Wei Li, Evan W Johnson, Shirley X Liu
    posted to chip by caseybrown on 2008-02-09 17:57:00 as read
  • Microarray Blob-Defect Removal Improves Array Analysis.
    Bioinformatics (1 March 2007)
    by Jun S S Song, Kaveh Maghsoudi, Wei Li, Edward Fox, John Quackenbush, X Shirley Liu
    posted to chip by caseybrown on 2008-02-09 17:54:24 as read along with 5 people and 1 group jfr kengg shigepong ghattem waszak Plantandetc
  • Model-based Analysis of 2-Color Arrays (MA2C)
    Genome Biology, Vol. 8 (29 August 2007), R178.
    by Jun S Song, Evan W Johnson, Xiaopeng Zhu, Xinmin Zhang, Wei Li, Arjun K Manrai, Jun S Liu, Runsheng Chen, Shirley X Liu
    posted to chip by caseybrown on 2008-02-09 17:52:37 as read along with 1 person jfr
  • Genome-Wide Mapping of in Vivo Protein-DNA Interactions
    Science (31 May 2007), 1141319.
    by David S Johnson, Ali Mortazavi, Richard M Myers, Barbara Wold
    posted to chip cisreg method sequencing by caseybrown on 2008-02-02 22:56:23 as read along with 18 people and 5 groups aalibes balicea andersbj JeremyZucker aswin kengg giovanni cjeans ghattem zwang epigenetics biomcgary george_g cabbagezs Jporci blobbybirdman emptyhb dquest Bioinformatics microRNA Marcotte_Lab UH - Computational Biology Myxo group
  • Model-based analysis of tiling-arrays for ChIP-chip.
    Proc Natl Acad Sci U S A, Vol. 103, No. 33. (15 August 2006), pp. 12457-12462.
    by WE Johnson, W Li, CA Meyer, R Gottardo, JS Carroll, M Brown, XS Liu
    posted to chip cisreg method by caseybrown on 2008-02-02 22:24:58 as read along with 5 people and 1 group kengg nicholso talponer bertelsen bozdagd Plantandetc
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