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caseybrowns Zhang [22 articles]

Senaste artiklarna i caseybrowns bibliotek av författaren Zhang. Du kan också see andras Zhang.
  • Germline Allele-Specific Expression of TGFBR1 Confers an Increased Risk of Colorectal Cancer
    Science, Vol. 321, No. 5894. (5 September 2008), pp. 1361-1365.
    by Laura Valle, Tarsicio Serena-Acedo, Sandya Liyanarachchi, Heather Hampel, Ilene Comeras, Zhongyuan Li, Qinghua Zeng, Hong-Tao Zhang, Michael J Pennison, Maureen Sadim, Boris Pasche, Stephan M Tanner, de La
    posted to transcription cancer by caseybrown on 2008-09-05 02:05:44 as **
  • Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes
    Nature (20 July 2008)
    by Dacheng Tian, Qiang Wang, Pengfei Zhang, Hitoshi Araki, Sihai Yang, Martin Kreitman, Thomas Nagylaki, Richard Hudson, Joy Bergelson, Jian-Qun Chen
    posted to mutation molevol by caseybrown on 2008-09-04 16:53:36 as ** along with 5 people zwang psique djkt bpcusack gjuggler
  • Modeling ChIP Sequencing In Silico with Applications
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000158.
    by Zhengdong D Zhang, Joel Rozowsky, Michael Snyder, Joseph Chang, Mark Gerstein
    posted to chip sequencing short_read_analysis by caseybrown on 2008-08-31 20:42:30 as ** along with 5 people aramesh2 djkt kengg Stew gdb
  • A method dealing with a large number of correlated traits in a linkage genome scan
    BMC Proceedings, Vol. 1, No. Suppl 1. (2007)
    by Tao Feng, Shuanglin Zhang, Qiuying Sha
    posted to eqtl multivariate by caseybrown on 2008-07-25 22:54:33 as **
  • Combinatorial patterns of histone acetylations and methylations in the human genome
    Nat Genet, Vol. 40, No. 7. (July 2008), pp. 897-903.
    by Zhibin Wang, Chongzhi Zang, Jeffrey A Rosenfeld, Dustin E Schones, Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Weiqun Peng, Michael Q Zhang, Keji Zhao
    posted to chromatin histone_modification by caseybrown on 2008-07-08 03:41:57 as ** along with 5 people bpcusack kambiz djkt kengg inesdesantiago
  • Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks.
    Nature genetics (15 June 2008)
    by Jun Zhu, Bin Zhang, Erin N N Smith, Becky Drees, Rachel B B Brem, Leonid Kruglyak, Roger E E Bumgarner, Eric E E Schadt
    posted to network by caseybrown on 2008-07-08 03:40:29 as ** along with 10 people realzhang kengg maralena ptrobajo tmmurali jyuh roys marck djkt srp33
  • Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
    Cell, Vol. 133, No. 6. (13 June 2008), pp. 1106-1117.
    by Xi Chen, Han Xu, Ping Yuan, Fang Fang, Mikael Huss, Vinsensius B Vega, Eleanor Wong, Yuriy L Orlov, Weiwei Zhang, Jianming Jiang, Yuin-Han Loh, Hock C Yeo, Zhen X Yeo, Vipin Narang, Kunde R Govindarajan, Bernard Leong, Atif Shahab, Yijun Ruan, Guillaume Bourque, Wing-Kin Sung, Neil D Clarke, Chia-Lin Wei, Huck-Hui Ng
    posted to chip es_cell sequencing by caseybrown on 2008-07-03 23:21:06 as ** along with 4 people jjray inesdesantiago kengg gdb
  • Gene set enrichment in eQTL data identifies novel annotations and pathway regulators.
    PLoS genetics, Vol. 4, No. 5. (May 2008)
    by C Wu, DL Delano, N Mitro, SV Su, J Janes, P McClurg, S Batalov, GL Welch, J Zhang, AP Orth, JR Walker, RJ Glynne, MP Cooke, JS Takahashi, K Shimomura, A Kohsaka, J Bass, E Saez, T Wiltshire, AI Su
    posted to eqtl network by caseybrown on 2008-06-17 21:30:12 as ** along with 2 people thomaskelder jyuh
  • Mapping the Genetic Architecture of Gene Expression in Human Liver.
    PLoS biology, Vol. 6, No. 5. (6 May 2008)
    by Eric E E Schadt, Cliona Molony, Eugene Chudin, Ke Hao, Xia Yang, Pek Y Y Lum, Andrew Kasarskis, Bin Zhang, Susanna Wang, Christine Suver, Jun Zhu, Joshua Millstein, Solveig Sieberts, John Lamb, Debraj Guhathakurta, Jonathan Derry, John D D Storey, Iliana Avila-Campillo, Mark J J Kruger, Jason M M Johnson, Carol A A Rohl, Atila van Nas, Margarete Mehrabian, Thomas A A Drake, Aldons J J Lusis, Ryan C C Smith, F Peter P Guengerich, Stephen C C Strom, Erin Schuetz, Thomas H H Rushmore, Roger Ulrich
    posted to eqtl liver metabolism by caseybrown on 2008-05-27 16:23:37 as read along with 9 people semrich ddunbar vplagnol Schmidtc ptrobajo Jonesy jyuh inesdesantiago hdopazo
  • Using quality scores and longer reads improves accuracy of Solexa read mapping
    BMC Bioinformatics, Vol. 9 (28 February 2008), 128.
    by Andrew D Smith, Zhenyu Xuan, Michael Q Zhang
    posted to method sequencing by caseybrown on 2008-05-02 14:43:29 as ** along with 5 people farhat ghattem mdimon kmdaily heliopais
  • Genome-wide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25.1
    Nat Genet, Vol. 40, No. 5. (May 2008), pp. 616-622.
    by Christopher I Amos, Xifeng Wu, Peter Broderick, Ivan P Gorlov, Jian Gu, Timothy Eisen, Qiong Dong, Qing Zhang, Xiangjun Gu, Jayaram Vijayakrishnan, Kate Sullivan, Athena Matakidou, Yufei Wang, Gordon Mills, Kimberly Doheny, Ya-Yu Tsai, Wei V Chen, Sanjay Shete, Margaret R Spitz, Richard S Houlston
    posted to cancer gwas lung by caseybrown on 2008-04-28 22:58:52 as read along with 1 person MPEYTO
  • An integrative genomics approach to infer causal associations between gene expression and disease
    Nature Genetics, Vol. 37, No. 7. (19 June 2005), pp. 710-717.
    by Eric E Schadt, John Lamb, Xia Yang, Jun Zhu, Steve Edwards, Debraj Guhathakurta, Solveig K Sieberts, Stephanie Monks, Marc Reitman, Chunsheng Zhang, Pek Y Lum, Amy Leonardson, Rolf Thieringer, Joseph M Metzger, Liming Yang, John Castle, Haoyuan Zhu, Shera F Kash, Thomas A Drake, Alan Sachs, Aldons J Lusis
    posted to eqtl network by caseybrown on 2008-03-30 23:04:55 as read along with 12 people and 1 group pcahan1 tuck brant ckehl koller giovanni lp2 dejori natstreet jo_davies chrisamiller mitko GeschwindLab
  • Variations in DNA elucidate molecular networks that cause disease
    Nature (16 March 2008)
    by Yanqing Chen, Jun Zhu, Pek Y Lum, Xia Yang, Shirly Pinto, Douglas J Macneil, Chunsheng Zhang, John Lamb, Stephen Edwards, Solveig K Sieberts, Amy Leonardson, Lawrence W Castellini, Susanna Wang, Marie-France Champy, Bin Zhang, Valur Emilsson, Sudheer Doss, Anatole Ghazalpour, Steve Horvath, Thomas A Drake, Aldons J Lusis, Eric E Schadt
    posted to diabetes eqtl liver metabolism mouse network by caseybrown on 2008-03-30 18:41:47 as read along with 12 people and 1 group djkt raiyar lp2 jo_davies shikin ptrobajo jyuh echinotrix natstreet sanchezbuelna jfr chrisamiller GeneGo
  • Genetics of gene expression and its effect on disease
    Nature (16 March 2008)
    by Valur Emilsson, Gudmar Thorleifsson, Bin Zhang, Amy S Leonardson, Florian Zink, Jun Zhu, Sonia Carlson, Agnar Helgason, Bragi G Walters, Steinunn Gunnarsdottir, Magali Mouy, Valgerdur Steinthorsdottir, Gudrun H Eiriksdottir, Gyda Bjornsdottir, Inga Reynisdottir, Daniel Gudbjartsson, Anna Helgadottir, Aslaug Jonasdottir, Adalbjorg Jonasdottir, Unnur Styrkarsdottir, Solveig Gretarsdottir, Kristinn P Magnusson, Hreinn Stefansson, Ragnheidur Fossdal, Kristleifur Kristjansson, Hjortur G Gislason, Tryggvi Stefansson, Bjorn G Leifsson, Unnur Thorsteinsdottir, John R Lamb, Jeffrey R Gulcher, Marc L Reitman, Augustine Kong, Eric E Schadt, Kari Stefansson
    posted to diabetes eqtl liver metabolism network by caseybrown on 2008-03-30 18:40:41 as read along with 12 people and 1 group djkt lp2 jo_davies shikin ptrobajo vplagnol smbe2008 echinotrix natstreet sanchezbuelna jyuh Borelli GeneGo
  • Genome-wide association study identifies novel breast cancer susceptibility loci
    Nature (27 May 2007)
    by Douglas F Easton, Karen A Pooley, Alison M Dunning, Paul DP Pharoah, Deborah Thompson, Dennis G Ballinger, Jeffery P Struewing, Jonathan Morrison, Helen Field, Robert Luben, Nicholas Wareham, Shahana Ahmed, Catherine S Healey, Richard Bowman, Kerstin B Meyer, Christopher A Haiman, Laurence K Kolonel, Brian E Henderson, Loic Le Marchand, Paul Brennan, Suleeporn Sangrajrang, Valerie Gaborieau, Fabrice Odefrey, Chen-Yang Shen, Pei-Ei Wu, Hui-Chun Wang, Diana Eccles, Gareth D Evans, Julian Peto, Olivia Fletcher, Nichola Johnson, Sheila Seal, Michael R Stratton, Nazneen Rahman, Georgia Chenevix-Trench, Stig E Bojesen, Børge G Nordestgaard, Christen K Axelsson, Montserrat Garcia-Closas, Louise Brinton, Stephen Chanock, Jolanta Lissowska, Beata Peplonska, Heli Nevanlinna, Rainer Fagerholm, Hannaleena Eerola, Daehee Kang, Keun-Young Yoo, Dong-Young Noh, Sei-Hyun Ahn, David J Hunter, Susan E Hankinson, David G Cox, Per Hall, Sara Wedren, Jianjun Liu, Yen-Ling Low, Natalia Bogdanova, Peter Schürmann, Thilo Dörk, Rob AEM Tollenaar, Catharina E Jacobi, Peter Devilee, Jan GM Klijn, Alice J Sigurdson, Michele M Doody, Bruce H Alexander, Jinghui Zhang, Angela Cox, Ian W Brock, Gordon Macpherson, Malcolm WR Reed, Fergus J Couch, Ellen L Goode, Janet E Olson, Hanne Meijers-Heijboer, Ans van den Ouweland, André Uitterlinden, Fernando Rivadeneira, Roger L Milne, Gloria Ribas, Anna Gonzalez-Neira, Javier Benitez, John L Hopper, Margaret Mccredie, Melissa Southey, Graham G Giles, Chris Schroen, Christina Justenhoven, Hiltrud Brauch, Ute Hamann, Yon-Dschun Ko, Amanda B Spurdle, Jonathan Beesley, Xiaoqing Chen, Arto Mannermaa, Veli-Matti Kosma, Vesa Kataja, Jaana Hartikainen, Nicholas E Day, David R Cox, Bruce AJ Ponder
    posted to breast cancer gwas by caseybrown on 2008-03-05 14:10:03 as ** along with 7 people and 1 group Terkko jfr joepickrell cat_worth xingxu jo_davies srp33 structural_bioinformatics
  • A gene atlas of the mouse and human protein-encoding transcriptomes.
    Proc Natl Acad Sci U S A, Vol. 101, No. 16. (20 April 2004), pp. 6062-6067.
    by AI Su, T Wiltshire, S Batalov, H Lapp, KA Ching, D Block, J Zhang, R Soden, M Hayakawa, G Kreiman, MP Cooke, JR Walker, JB Hogenesch
    posted to cisreg database transcription by caseybrown on 2008-02-13 14:59:21 as ** along with 11 people and 2 groups dragonrez nickluscombe jeremymiller eukfn usagi-kirin cjeans asu shikin jdiezperezj maralena gjuggler EBI-regulation GeschwindLab
  • Genome-wide promoter extraction and analysis in human, mouse, and rat.
    Genome Biol, Vol. 6, No. 8. (2005)
    by Z Xuan, F Zhao, J Wang, G Chen, MQ Zhang
    posted to cisreg promoter by caseybrown on 2008-02-13 14:57:14 as ** along with 2 people nur77 uz_labu_laimi
  • DNA motifs in human and mouse proximal promoters predict tissue-specific expression.
    Proc Natl Acad Sci U S A (10 April 2006)
    by Andrew D D Smith, Pavel Sumazin, Zhenyu Xuan, Michael Q Q Zhang
    posted to cisreg transcription by caseybrown on 2008-02-13 14:44:02 as ** along with 2 people jfr postrational
  • Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
    Genome Res. (7 February 2008), gr.7080508.
    by David S Johnson, Wei Li, Benjamin D Gordon, Arindam Bhattacharjee, Bo Curry, Jayati Ghosh, Leonardo Brizuela, Jason S Carroll, Myles Brown, Paul Flicek, Christopher M Koch, Ian Dunham, Mark Bieda, Xiaoqin Xu, Peggy J Farnham, Philipp Kapranov, David A Nix, Thomas R Gingeras, Xinmin Zhang, Heather Holster, Nan Jiang, Roland Green, Jun S Song, Scott A Mccuine, Elizabeth Anton, Loan Nguyen, Nathan D Trinklein, Zhen Ye, Keith Ching, David Hawkins, Bing Ren, Peter C Scacheri, Joel Rozowsky, Alexander Karpikov, Ghia Euskirchen, Sherman Weissman, Mark Gerstein, Michael Snyder, Annie Yang, Zarmik Moqtaderi, Heather Hirsch, Hennady P Shulha, Yutao Fu, Zhiping Weng, Kevin Struhl, Richard M Myers, Jason D Lieb, Shirley X Liu
    posted to chip by caseybrown on 2008-02-11 14:29:02 as read along with 11 people and 2 groups jfr kengg djkt xiaobeizhao cabbagezs idonaldson magusina lp2 stajich gracio gdb BergmanLab Berkeley Mycology
  • Tilescope: online analysis pipeline for high-density tiling microarray data
    Genome Biology, Vol. 8 (14 May 2007), R81.
    by Zhengdong D Zhang, Joel Rozowsky, Hugo YK Lam, Jiang Du, Michael Snyder, Mark Gerstein
    posted to chip by caseybrown on 2008-02-09 20:15:09 as read along with 3 people jfr inesdesantiago GeeSharpMinor
  • Model-based Analysis of 2-Color Arrays (MA2C)
    Genome Biology, Vol. 8 (29 August 2007), R178.
    by Jun S Song, Evan W Johnson, Xiaopeng Zhu, Xinmin Zhang, Wei Li, Arjun K Manrai, Jun S Liu, Runsheng Chen, Shirley X Liu
    posted to chip by caseybrown on 2008-02-09 17:52:37 as read along with 1 person jfr
  • Multiplex amplification of large sets of human exons
    Nature Methods, Vol. 4, No. 11. (14 October 2007), pp. 931-936.
    by Gregory J Porreca, Kun Zhang, Jin B Li, Bin Xie, Derek Austin, Sara L Vassallo, Emily M Leproust, Bill J Peck, Christopher J Emig, Fredrik Dahl, Yuan Gao, George M Church, Jay Shendure
    posted to capture method sequencing by caseybrown on 2008-02-02 22:22:10 as read along with 2 people jyuh balicea
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