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brianbs library [113 articles]

Senaste artiklarna i brianbs bibliotek.
  • Deducing topology of protein-protein interaction networks from experimentally measured sub-networks
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Ling Yang, Thomas Vondriska, Zhangang Han, Robb Maclellan, James Weiss, Zhilin Qu
    posted to proteomics network modeling interaction by brianb on 2008-07-04 21:01:16 as ** along with 2 people renatomilani neils
  • A General System for Studying Protein−Protein Interactions in Gram-Negative Bacteria
    J. Proteome Res. (1 July 2008)
    by Dale A Pelletier, Gregory B Hurst, Linda J Foote, Patricia K Lankford, Catherine K Mckeown, Tse-Yuan Lu, Denise D Schmoyer, Manesh B Shah, Judson W Hervey, Hayes W Mcdonald, Brian S Hooker, William R Cannon, Don S Daly, Jason M Gilmore, Steven H Wiley, Deanna L Auberry, Yisong Wang, Frank W Larimer, Stephen J Kennel, Mitchel J Doktycz, Jennifer L Morrell-Falvey, Elizabeth T Owens, Michelle V Buchanan
    posted to proteomics interaction by brianb on 2008-07-03 22:37:36 as ** along with 1 person neils
  • Detection of Mutations in EGFR in Circulating Lung-Cancer Cells
    N Engl J Med (2 July 2008), NEJMoa0800668.
    by Shyamala Maheswaran, Lecia V Sequist, Sunitha Nagrath, Lindsey Ulkus, Brian Brannigan, Chey V Collura, Elizabeth Inserra, Sven Diederichs, John A Iafrate, Daphne W Bell, Subba Digumarthy, Alona Muzikansky, Daniel Irimia, Jeffrey Settleman, Ronald G Tompkins, Thomas J Lynch, Mehmet Toner, Daniel A Haber
    posted to diganostic circulating chip cancer by brianb on 2008-07-03 19:58:08 as **
  • Spectral Probabilities and Generating Functions of Tandem Mass Spectra: A Strike against Decoy Databases
    J. Proteome Res. (3 July 2008)
    by Sangtae Kim, Nitin Gupta, Pavel A Pevzner
    posted to proteomics fdr bioinformatics by brianb on 2008-07-03 16:08:04 as **
  • Quantitative Measurements of Protein Interactions in a Crowded Cellular Environment
    Anal. Chem. (3 July 2008)
    by Edwin Li, Jesse Placone, Mikhail Merzlyakov, Kalina Hristova
    posted to proteomics interaction fret by brianb on 2008-07-03 16:07:32 as ** along with 1 person marck
  • High confidence determination of specific protein-protein interactions using quantitative mass spectrometry.
    Current opinion in biotechnology (27 June 2008)
    by Michiel Vermeulen, Nina C C Hubner, Matthias Mann
    posted to quantitation proteomics interaction by brianb on 2008-07-03 16:06:53 as **
  • Protein microarrays for multiplex analysis of signal transduction pathways.
    Nat Med, Vol. 10, No. 12. (December 2004), pp. 1390-1396.
    by SM Chan, J Ermann, L Su, CG Fathman, PJ Utz
    posted to signaling proteomics modeling arrays by brianb on 2008-07-03 16:05:26 as ** along with 2 people and 2 groups kentsis breden FAB-lab SFUAntibodyResearch
  • Mass Spectrometry Analysis of Proteome-Wide Proteolytic Post-Translational Degradation of Proteins
    Anal. Chem. (26 June 2008)
    by Yufeng Shen, Kim K Hixson, Nikola Tolić, David G Camp, Samuel O Purvine, Ronald J Moore, Richard D Smith
    posted to ptm proteomics by brianb on 2008-07-03 16:04:53 as **
  • Phosphorylation-Specific MS/MS Scoring for Rapid and Accurate Phosphoproteome Analysis
    J. Proteome Res. (19 June 2008)
    by Samuel H Payne, Margaret Yau, Marcus B Smolka, Stephen Tanner, Huilin Zhou, Vineet Bafna
    posted to ptm proteomics phosphorylation fdr bioinformatics by brianb on 2008-07-03 16:04:33 as ** along with 1 person neils
  • Separating the Wheat from the Chaff: Unbiased Filtering of Background Tandem Mass Spectra Improves Protein Identification
    J. Proteome Res. (18 June 2008)
    by Magno Junqueira, Victor Spirin, Santana, Patrice Waridel, Vineeth Surendranath, Grigoriy Kryukov, Ivan Adzhubei, Henrik Thomas, Shamil Sunyaev, Andrej Shevchenko
    posted to proteomics fdr bioinformatics by brianb on 2008-07-03 16:03:43 as **
  • Digestion of Native Proteins for Proteomics Using a Thermocycler
    Anal. Chem. (26 June 2008)
    by Obolbek A Turapov, Galina V Mukamolova, Andrew R Bottrill, Michael K Pangburn
    posted to proteomics by brianb on 2008-07-03 15:59:19 as **
  • Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions.
    Analytica chimica acta, Vol. 618, No. 2. (23 June 2008), pp. 168-183.
    by J Toews, JC Rogalski, TJ Clark, J Kast
    posted to xlink ptm proteomics formaldehyde by brianb on 2008-07-03 15:58:40 as ** along with 1 person jyuh
  • An Immuno-Chemo-Proteomics Method for Drug Target Deconvolution
    J. Proteome Res. (1 July 2008)
    by Chaitanya Saxena, Eugene Zhen, Richard E Higgs, John E Hale
    posted to proteomics modeling by brianb on 2008-07-03 15:57:32 as **
  • Global investigation of protein-protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences
    Nucl. Acids Res. (27 June 2008), gkn390.
    by S Pitre, C North, M Alamgir, M Jessulat, A Chan, X Luo, JR Green, M Dumontier, F Dehne, A Golshani
    posted to proteomics interaction bioinformatics by brianb on 2008-07-03 15:56:47 as ** along with 3 people renatomilani pansapiens neils
  • A multidimensional chromatography technology for in-depth phosphoproteome analysis.
    Molecular & cellular proteomics : MCP (11 April 2008)
    by Claudio P P Albuquerque, Marcus B B Smolka, Samuel H H Payne, Vineet Bafna, Jimmy Eng, Huilin Zhou
    posted to proteomics phosphorylation chromatography by brianb on 2008-06-22 22:23:07 as **
  • Hydrophilic interaction chromatography reduces the complexity of the phosphoproteome and improves global phosphopeptide isolation and detection.
    Molecular & cellular proteomics : MCP, Vol. 7, No. 5. (May 2008), pp. 971-980.
    by DE McNulty, RS Annan
    posted to proteomics phosphorylation chromatography by brianb on 2008-06-22 22:22:29 as **
  • Evaluation and Optimization of ZIC-HILIC-RP as an Alternative MudPIT Strategy
    J. Proteome Res., Vol. 6, No. 3. (2 March 2007), pp. 937-946.
    by PJ Boersema, N Divecha, AJR Heck, S Mohammed
    posted to proteomics chromatography by brianb on 2008-06-22 22:18:02 as **
  • Enhancing Peptide Identification Confidence by Combining Search Methods
    J. Proteome Res. (18 June 2008)
    by Gelio Alves, Wells W Wu, Guanghui Wang, Rong-Fong Shen, Yi-Kuo Yu
    posted to proteomics fdr bioinformatics by brianb on 2008-06-21 01:21:47 as **
  • Utility of formaldehyde cross-linking and mass spectrometry in the study of protein-protein interactions.
    Journal of mass spectrometry : JMS (28 April 2008)
    by Brent W W Sutherland, Judy Toews, Juergen Kast
    posted to proteomics interaction formaldehyde by brianb on 2008-06-20 03:55:39 as ** along with 1 person jyuh
  • Proteomic studies in animal models of diabetes
    PROTEOMICS - CLINICAL APPLICATIONS, Vol. 2, No. 5. (2008), pp. 654-669.
    by Svante Resjö, Karin Berger, Malin Fex, Ola Hansson
    posted to review proteomics diabetes by brianb on 2008-06-19 14:42:03 as **
  • Comparison of the Electron Capture Dissociation Fragmentation Behavior of Doubly and Triply Protonated Peptides from Trypsin, Glu-C, and Chymotrypsin Digestion
    J. Proteome Res. (13 June 2008)
    by Anastasia Kalli, Kristina Håkansson
    posted to proteomics fragmentation by brianb on 2008-06-14 00:30:07 as **
  • Validation of Endogenous Peptide Identifications Using a Database of Tandem Mass Spectra
    J. Proteome Res. (13 June 2008)
    by Maria Fälth, Marcus Svensson, Anna Nilsson, Karl Sköld, David Fenyö, Per E Andren
    posted to proteomics bioinformatics by brianb on 2008-06-14 00:29:34 as **
  • PhosphoScore: An Open-Source Phosphorylation Site Assignment Tool for MSn Data
    J. Proteome Res. (11 June 2008)
    by Brian E Ruttenberg, Trairak Pisitkun, Mark A Knepper, Jason D Hoffert
    posted to proteomics fdr bioinformatics by brianb on 2008-06-12 14:41:00 as ** along with 2 people woaizuqiu neils
  • Comprehensive Comparison of Collision Induced Dissociation and Electron Transfer Dissociation
    Anal. Chem. (10 June 2008)
    by Henrik Molina, Rune Matthiesen, Kumaran Kandasamy, Akhilesh Pandey
    posted to proteomics fragmentation by brianb on 2008-06-12 14:34:03 as **
  • Mass spectrometric quantification of asparagine synthetase in circulating leukemia cells from acute lymphoblastic leukemia patients.
    Journal of proteomics, Vol. 71, No. 1. (30 April 2008), pp. 61-70.
    by SE Abbatiello, YX Pan, M Zhou, AS Wayne, TD Veenstra, SP Hunger, MS Kilberg, JR Eyler, NG Richards, TP Conrads
    posted to quantitation proteomics by brianb on 2008-06-12 14:32:35 as **
  • Statistical learning of peptide retention behavior in chromatographic separations: A new kernel-based approach for computational proteomics
    BMC Bioinformatics, Vol. 8 (30 November 2007), 468.
    by Nico Pfeifer, Andreas Leinenbach, Christian G Huber, Oliver Kohlbacher
    posted to proteomics chromatography bioinformatics by brianb on 2008-06-09 13:25:46 as ** along with 1 person jyuh
  • OpenMS - An open-source software framework for mass spectrometry
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Marc Sturm, Andreas Bertsch, Clemens Groepl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole S Trieglaff, Alexandra Zerck, Knut Reinert, Oliver Kohlbacher
    posted to quantitation proteomics bioinformatics by brianb on 2008-06-09 13:23:59 as ** along with 4 people groepl olberd jyuh neils
  • Protein abundance profiling of the Escherichia coli cytosol
    BMC Genomics, Vol. 9 (27 February 2008), 102.
    by Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, Ulrich F Hartl, Michael J Kerner, Dmitrij Frishman
    posted to quantitation proteomics by brianb on 2008-06-08 04:08:16 as ** along with 2 people Retchless osilander
  • Accurate inclusion mass screening: a bridge from unbiased discovery to targeted assay development for biomarker verification
    Mol Cell Proteomics (4 June 2008), M800218-MCP200.
    by Jacob D Jaffe, Hasmik Keshishian, Betty Chang, Theresa A Addona, Michael A Gillette, Steven A Carr
    posted to proteomics bioinformatics by brianb on 2008-06-08 02:55:53 as **
  • Protein Quantification by Selective Isolation and Fragmentation of Isotopic Pairs Using FT-ICR MS.
    Journal of the American Society for Mass Spectrometry (8 April 2008)
    by Hannah Johnson, Stephen C C Wong, Deborah M M Simpson, Robert J Beynon, Simon J J Gaskell
    posted to quantitation proteomics by brianb on 2008-06-06 21:37:26 as **
  • Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes.
    Nature protocols, Vol. 1, No. 2. (2006), pp. 1029-1043.
    by JM Pratt, DM Simpson, MK Doherty, J Rivers, SJ Gaskell, RJ Beynon
    posted to quantitation proteomics by brianb on 2008-06-06 20:34:41 as **
  • Absolute multiplexed quantitative analysis of protein expression during muscle development using QconCAT.
    Molecular & cellular proteomics : MCP, Vol. 6, No. 8. (August 2007), pp. 1416-1427.
    by J Rivers, DM Simpson, DH Robertson, SJ Gaskell, RJ Beynon
    posted to quantitation proteomics by brianb on 2008-06-06 20:32:17 as **
  • Targeted comparative proteomics by liquid chromatography/matrix-assisted laser desorption/ionization triple-quadrupole mass spectrometry.
    Rapid communications in mass spectrometry : RCM, Vol. 20, No. 5. (2006), pp. 904-910.
    by JE Melanson, KA Chisholm, DM Pinto
    posted to quantitation proteomics formaldehyde by brianb on 2008-06-06 05:06:54 as **
  • High-coverage quantitative proteomics using amine-specific isotopic labeling.
    Proteomics, Vol. 6, No. 16. (August 2006), pp. 4466-4474.
    by JE Melanson, SL Avery, DM Pinto
    posted to quantitation proteomics formaldehyde by brianb on 2008-06-06 04:58:05 as **
  • Identification of Formaldehyde-Induced Modifications in Proteins: Reactions with Insulin
    Bioconjugate Chem., Vol. 17, No. 3. (17 May 2006), pp. 815-822.
    by B Metz, GFA Kersten, GJE Baart, A Dejong, H Meiring, J Tenhove, MJ Vansteenbergen, WE Hennink, DJA Crommelin, W Jiskoot
    posted to ptm formaldehyde by brianb on 2008-06-06 04:54:22 as **
  • Assessing the limits of genomic data integration for predicting protein networks.
    Genome Res, Vol. 15, No. 7. (July 2005), pp. 945-953.
    by LJ Lu, Y Xia, A Paccanaro, H Yu, M Gerstein
    posted to network modeling genomics bioinformatics by brianb on 2008-06-05 05:08:41 as ** along with 13 people and 2 groups phoenixzxl carlk iris_2001 okarsligil lfriedl balajis maryee opheliav wnpx mbeautru eukfn grahamc nedwards kdl Bioinformatics
  • Protein networks in disease
    Genome Res., Vol. 18, No. 4. (1 April 2008), pp. 644-652.
    by Trey Ideker, Roded Sharan
    posted to proteomics network modeling bioinformatics by brianb on 2008-06-05 05:07:23 as ** along with 19 people zwang balicea raiyar ptrobajo jfr paolomarcatili thomaskelder gracio schuylrp jyuh tmmurali Borelli jwdietrich frohike bootsy nedwards roys mclarenv phoenixzxl
  • The properties of high-dimensional data spaces: implications for exploring gene and protein expression data
    Nat Rev Cancer, Vol. 8, No. 1. (January 2008), pp. 37-49.
    by Robert Clarke, Habtom W Ressom, Antai Wang, Jianhua Xuan, Minetta C Liu, Edmund A Gehan, Yue Wang
    posted to no-tag by brianb on 2008-06-05 05:05:34 as ** along with 8 people and 1 group jyuh tmmurali dwf frohike cjeans nedwards shikin blackm0k Bioinformatics
  • NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways
    Nucl. Acids Res. (4 June 2008), gkn336.
    by Sylvain Brohee, Karoline Faust, Gipsi Lima-Mendez, Olivier Sand, Rekin's Janky, Gilles Vanderstocken, Yves Deville, Jacques van Helden
    posted to proteomics network modeling bioinformatics by brianb on 2008-06-05 04:57:45 as ** along with 2 people balicea neils
  • A two-stage differential hydrogen deuterium exchange method for the rapid characterization of protein/ligand interactions.
    Journal of biomolecular techniques : JBT, Vol. 18, No. 4. (September 2007), pp. 194-204.
    by MJ Chalmers, SA Busby, BD Pascal, MR Southern, PR Griffin
    posted to hdx proteomics interaction by brianb on 2008-06-05 04:47:07 as **
  • The Deuterator: Software for the determination of backbone amide deuterium levels from H/D exchange MS data
    BMC Bioinformatics, Vol. 8 (16 May 2007), 156.
    by Bruce D Pascal, Michael J Chalmers, Scott A Busby, Christopher C Mader, Mark R Southern, Nicholas F Tsinoremas, Patrick R Griffin
    posted to hdx proteomics interaction by brianb on 2008-06-04 22:31:24 as **
  • The Mannose 6-Phosphate Glycoprotein Proteome
    J. Proteome Res. (29 May 2008)
    by David E Sleat, Maria C Della Valle, Haiyan Zheng, Dirk F Moore, Peter Lobel
    posted to proteomics glycosylation by brianb on 2008-06-04 16:34:19 as **
  • An integrated, directed mass spectrometric approach for in-depth characterization of complex peptide mixtures.
    Molecular & cellular proteomics : MCP (29 May 2008)
    by Alexander Schmidt, Nils Gehlenborg, Bernd Bodenmiller, Lukas N N Mueller, Dave Campbell, Markus Mueller, Ruedi Aebersold, Bruno Domon
    posted to proteomics phosphorylation chromatography bioinformatics by brianb on 2008-06-04 16:21:17 as **
  • Investigation of protein tyrosine phosphatase 1B function by quantitative proteomics.
    Molecular & cellular proteomics : MCP (31 May 2008)
    by Philipp Mertins, H Christian C Eberl, Jörg Renkawitz, Jesper V V Olsen, Michel L L Tremblay, Matthias Mann, Axel Ullrich, Henrik Daub
    posted to quantitation proteomics phosphorylation by brianb on 2008-06-04 15:53:45 as **
  • Increased Throughput and Reduced Carryover of Mass Spectrometry-Based Proteomics Using a High-Efficiency Nonsplit Nanoflow Parallel Dual-Column Capillary HPLC System
    J. Proteome Res. (31 May 2008)
    by Hong Wang, Samir M Hanash
    posted to proteomics chromatography by brianb on 2008-06-04 15:51:58 as **
  • Immonium Ion Scanning for the Discovery of Post-Translational Modifications and Its Application to Histones
    J. Proteome Res. (3 June 2008)
    by Timothy A Couttas, Mark J Raftery, Giulia Bernardini, Marc R Wilkins
    posted to ptm proteomics by brianb on 2008-06-04 15:51:27 as **
  • An integrated mass spectrometry-based proteomic approach: quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26 S proteasome-interacting network.
    Mol Cell Proteomics, Vol. 5, No. 2. (February 2006), pp. 366-378.
    by C Guerrero, C Tagwerker, P Kaiser, L Huang
    posted to xlink proteomics interaction formaldehyde by brianb on 2008-05-30 04:41:54 as ** along with 1 person jyuh
  • Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics.
    Proc Natl Acad Sci U S A (24 January 2008)
    by Mihaela E E Sardiu, Yong Cai, Jingji Jin, Selene K K Swanson, Ronald C C Conaway, Joan W W Conaway, Laurence Florens, Michael P P Washburn
    posted to proteomics network modeling interaction bioinformatics by brianb on 2008-05-30 04:40:18 as ** along with 2 people jyuh renatomilani
  • Improving large-scale proteomics by clustering of mass spectrometry data.
    Proteomics, Vol. 4, No. 4. (April 2004), pp. 950-960.
    by I Beer, E Barnea, T Ziv, A Admon
    posted to proteomics bioinformatics by brianb on 2008-05-30 04:04:54 as **
  • Elevated hydrostatic pressure promotes protein recovery from formalin-fixed, paraffin-embedded tissue surrogates
    Laboratory Investigation, Vol. aop, No. current.
    by Carol B Fowler, Robert E Cunningham, Timothy J Waybright, Josip Blonder, Timothy D Veenstra, Timothy J O'Leary, Jeffrey T Mason
    posted to proteomics formaldehyde ar by brianb on 2008-05-30 03:33:42 as ** along with 1 person jyuh
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