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bpcusacks library [371 articles]

Senaste artiklarna i bpcusacks bibliotek.
  • Energy-dependent fitness: A quantitative model for the evolution of yeast transcription factor binding sites
    Proceedings of the National Academy of Sciences, Vol. 105, No. 34. (2008), pp. 12376-12381.
    by Ville Mustonen, Justin Kinney, Curtis G Callan, Michael Lässig
    posted to no-tag by bpcusack on 2008-08-27 14:32:19 as ** along with 1 person zwang
  • Deletion of Ultraconserved Elements Yields Viable Mice
    PLoS Biology, Vol. 5, No. 9. (1 September 2007), e234.
    by Nadav Ahituv, Yiwen Zhu, Axel Visel, Amy Holt, Veena Afzal, Len A Pennacchio, Edward M Rubin
    posted to cne by bpcusack on 2008-08-26 13:54:15 as ** along with 8 people and 3 groups balicea dchughes cwbrown djkt lp2 cabbagezs Stew gjuggler EisenLab G4ID Genetics-of-Gambling
  • A Brief History of the Hypothesis
    Cell, Vol. 134, No. 3. (8 August 2008), pp. 378-381.
    by David J Glass, Ned Hall
    posted to phil_sci by bpcusack on 2008-08-26 10:37:53 as ** along with 7 people and 2 groups Zephyrus Enro Tominator paulschlesinger barry jjray reyez Roswell Cancer Crosstalk Centre de Recherches Interdisciplinaires
  • Bias in phylogenetic tree reconciliation methods: implications for vertebrate genome evolution
    Genome Biology, Vol. 8 (16 July 2007), R141.
    by Matthew W Hahn
    posted to no-tag by bpcusack on 2008-08-25 14:12:11 as ** along with 1 person and 1 group stajich Berkeley Mycology
  • Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster
    Genome Res. (26 June 2008), gr.077131.108.
    by Alisha Holloway, David Begun, Adam Siepel, Katherine Pollard
    posted to no-tag by bpcusack on 2008-08-25 14:11:05 as ** along with 2 people and 2 groups cisevol maximilianh cis-regulatory-evolution BergmanLab
  • The multiple lives of NMD factors: balancing roles in gene and genome regulation
    Nat Rev Genet, Vol. 9, No. 9. (2008), pp. 699-712.
    by Olaf Isken, Lynne E Maquat
    posted to nmd by bpcusack on 2008-08-22 09:10:13 as ** along with 1 person and 1 group stajich Berkeley Mycology
  • Purifying selection of mtDNA and its implications for understanding evolution and mitochondrial disease.
    Nature reviews. Genetics (12 August 2008)
    by James Bruce B Stewart, Christoph Freyer, Joanna L L Elson, Nils-Göran G Larsson
    posted to evol_med by bpcusack on 2008-08-21 17:19:32 as ** along with 1 person dchughes
  • Ancestral paralogs and pseudoparalogs and their role in the emergence of the eukaryotic cell
    Nucleic Acids Research, Vol. 33, No. 14. (2005), pp. 4626-4638.
    by Kira S Makarova, Yuri I Wolf, Sergey L Mekhedov, Boris G Mirkin, Eugene V Koonin
    posted to no-tag by bpcusack on 2008-08-21 13:26:21 as ** along with 2 people tny bluto
  • Noise in Gene Expression: Origins, Consequences, and Control
    Science, Vol. 309, No. 5743. (23 September 2005), pp. 2010-2013.
    by Jonathan M Raser, Erin K O'Shea
    posted to noise by bpcusack on 2008-08-21 11:17:13 as ** along with 13 people and 2 groups klo kagibbs dylanwalker shikin rklancer monod dayjm xico nirfriedman koller mhucka margaritis suizan GeneGo WetBiology
  • Stochasticity in gene expression: from theories to phenotypes.
    Nat Rev Genet (10 May 2005)
    by Mads Kærn, Timothy C C Elston, William J J Blake, James J J Collins
    posted to noise by bpcusack on 2008-08-21 11:16:12 as ** along with 3 people rklancer sharatjv margaritis
  • Double-strand breaks associated with repetitive DNA can reshape the genome.
    Proceedings of the National Academy of Sciences of the United States of America (13 August 2008)
    by Juan Lucas L Argueso, James Westmoreland, Piotr A A Mieczkowski, Malgorzata Gawel, Thomas D D Petes, Michael A A Resnick
    posted to no-tag by bpcusack on 2008-08-20 10:42:18 as **
  • Allopolyploid speciation in Persicaria (Polygonaceae): Insights from a low-copy nuclear region.
    Proceedings of the National Academy of Sciences of the United States of America (18 August 2008)
    by Sang-Tae T Kim, Sonia E E Sultan, Michael J J Donoghue
    posted to speciation by bpcusack on 2008-08-20 10:41:31 as **
  • Tree thinking for all biology: the problem with reading phylogenies as ladders of progress
    BioEssays, Vol. 30, No. 9. (2008), pp. 854-867.
    by Kevin E Omland, Lyn G Cook, Michael D Crisp
    posted to no-tag by bpcusack on 2008-08-20 10:39:19 as ** along with 1 person gjuggler
  • An ecological and evolutionary perspective on humanâmicrobe mutualism and disease
    Nature, Vol. 449, No. 7164. (17 October 2007), pp. 811-818.
    by Les Dethlefsen, Margaret Mcfall-Ngai, David A Relman
    posted to landscape figure by bpcusack on 2008-08-19 13:35:48 as ** along with 1 person and 1 group Zman Fasting, food and evolution
  • The genetic theory of adaptation: a brief history
    Nature Reviews Genetics, Vol. 6, No. 2. (01 February 2005), pp. 119-127.
    by Allen A Orr
    posted to landscape epistasis adaptation by bpcusack on 2008-08-19 12:29:20 as ** along with 5 people and 1 group stevanspringer ryang Chue timflutre timothee FAB-lab
  • Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation.
    Nature reviews. Genetics (1 July 2008)
    by Luis López-Maury, Samuel Marguerat, Jürg Bähler
    posted to noise by bpcusack on 2008-08-19 12:24:05 as ** along with 6 people cambray klo jmjimenez Ema jjray bootsy
  • Selection to minimise noise in living systems and its implications for the evolution of gene expression
    Mol Syst Biol, Vol. 4 (4 March 2008)
    by Ben Lehner
    posted to phenotypic_mutn noise by bpcusack on 2008-08-19 12:21:52 as ** along with 9 people austin jjray grahamc zwang bootsy biomcgary wilbur caseybrown michaelbarton
  • Effects of population size and mutation rate on the evolution of mutational robustness.
    Evolution; international journal of organic evolution, Vol. 61, No. 3. (March 2007), pp. 666-674.
    by SF Elena, CO Wilke, C Ofria, RE Lenski
    posted to landscape epistasis by bpcusack on 2008-08-19 10:45:18 as **
  • Distributions of epistasis in microbes fit predictions from a fitness landscape model
    Nature Genetics, Vol. 39, No. 4. (18 March 2007), pp. 555-560.
    by Guillaume Martin, Santiago F Elena, Thomas Lenormand
    posted to landscape figure epistasis by bpcusack on 2008-08-19 10:44:49 as ** along with 1 person ramensky
  • Survival of the sparsest: robust gene networks are parsimonious
    Mol Syst Biol, Vol. 4 (2008)
    by Robert D Leclerc
    posted to robustness networks by bpcusack on 2008-08-19 10:34:15 as ** along with 4 people reyez maralena bootsy Retchless
  • Double Strand Breaks Can Initiate Gene Silencing and SIRT1-Dependent Onset of DNA Methylation in an Exogenous Promoter CpG Island
    PLoS Genet, Vol. 4, No. 8. (2008), e1000155.
    by Heather M O'Hagan, Helai P Mohammad, Stephen B Baylin
    posted to no-tag by bpcusack on 2008-08-15 17:33:09 as **
  • Genetic Variation in an Individual Human Exome
    PLoS Genet, Vol. 4, No. 8. (2008), e1000160.
    by Pauline C Ng, Samuel Levy, Jiaqi Huang, Timothy B Stockwell, Brian P Walenz, Kelvin Li, Nelson Axelrod, Dana A Busam, Robert L Strausberg, Craig J Venter
    posted to no-tag by bpcusack on 2008-08-15 17:32:26 as ** along with 4 people reyez Ema caseybrown djkt
  • Selective Constraints in Experimentally Defined Primate Regulatory Regions
    PLoS Genet, Vol. 4, No. 8. (2008), e1000157.
    by Daniel J Gaffney, Ran Blekhman, Jacek Majewski
    posted to no-tag by bpcusack on 2008-08-15 17:31:29 as ** along with 7 people and 2 groups alhufton cisevol maximilianh caseybrown pradiptaray aprasad djkt cis-regulatory-evolution BergmanLab
  • From The Cover: An algorithm for progressive multiple alignment of sequences with insertions
    PNAS, Vol. 102, No. 30. (26 July 2005), pp. 10557-10562.
    by Ari Loytynoja, Nick Goldman
    posted to alignment by bpcusack on 2008-08-15 13:18:44 as ** along with 5 people and 1 group dgront hpaces stevanspringer timflutre gjuggler FAB-lab
  • Mind the gaps: Progress in progressive alignment
    Proceedings of the National Academy of Sciences, Vol. 102, No. 30. (26 July 2005), pp. 10411-10412.
    by DG Higgins, G Blackshields, IM Wallace
    posted to alignment by bpcusack on 2008-08-15 13:18:07 as ** along with 2 people BioNica treangen
  • Differences in the evolutionary history of disease genes affected by dominant or recessive mutations
    BMC Genomics, Vol. 7 (03 July 2006), 165.
    by Simon J Furney, Mar M Alba, Nuria Lopez-Bigas
    posted to evol_med by bpcusack on 2008-08-15 13:17:41 as ** along with 1 person chad_davis
  • Impacts of protein-protein interaction domains on organism and network complexityPPI domains and organism/network complexity.
    Genome research (7 August 2008)
    by Kai Xia, Zheng Fu, Lei Hou, Jing-Dong J D Han
    posted to ppi by bpcusack on 2008-08-15 12:14:27 as ** along with 1 person kluck
  • Assessing the Determinants of Evolutionary Rates in the Presence of Noise.
    Mol Biol Evol (7 March 2007)
    by Joshua B B Plotkin, Hunter B B Fraser
    posted to no-tag by bpcusack on 2008-08-14 16:49:07 as ** along with 2 people and 1 group dpollard Garamonfok EisenLab
  • Using protein complexes to predict phenotypic effects of gene mutation
    Genome Biology, Vol. 8 (27 November 2007), R252.
    by Hunter B Fraser, Joshua B Plotkin
    posted to no-tag by bpcusack on 2008-08-14 16:48:50 as ** along with 3 people grahamc ramensky jiny
  • Genome landscapes and bacteriophage codon usage.
    PLoS computational biology, Vol. 4, No. 2. (February 2008)
    by JB Lucks, DR Nelson, GR Kudla, JB Plotkin
    posted to codon_usage by bpcusack on 2008-08-14 16:48:26 as **
  • Evidence from comparative genomics for a complete sexual cycle in the 'asexual' pathogenic yeast Candida glabrata.
    Genome biology, Vol. 4, No. 2. (2003)
    by S Wong, MA Fares, W Zimmermann, G Butler, KH Wolfe
    posted to no-tag by bpcusack on 2008-08-14 16:47:22 as **
  • Using a meiosis detection toolkit to investigate ancient asexual "scandals" and the evolution of sex.
    BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 30, No. 6. (June 2008), pp. 579-589.
    by AM Schurko, JM Logsdon
    posted to no-tag by bpcusack on 2008-08-14 16:46:59 as **
  • An expanded inventory of conserved meiotic genes provides evidence for sex in Trichomonas vaginalis.
    PLoS ONE, Vol. 3, No. 8. (2007)
    by SB Malik, AW Pightling, LM Stefaniak, AM Schurko, JM Logsdon
    posted to no-tag by bpcusack on 2008-08-14 16:46:41 as **
  • CpG islands as genomic footprints of promoters that are associated with replication origins.
    Current biology : CB, Vol. 9, No. 17. (9 September 1999)
    by F Antequera, A Bird
    posted to cpg by bpcusack on 2008-08-14 15:48:14 as **
  • Incorporating evolution into medical education.
    Science (New York, N.Y.), Vol. 312, No. 5776. (19 May 2006)
    by JD McInerney
    posted to evol_med by bpcusack on 2008-08-13 16:36:49 as **
  • notes Medicine Needs Evolution
    Science, Vol. 311, No. 5764. (24 February 2006), 1071.
    by Randolph M Nesse, Stephen C Stearns, Gilbert S Omenn
    posted to evol_med by bpcusack on 2008-08-13 16:36:32 as ** along with 4 people and 1 group stevanspringer matzke juliettecolinas rmnesse FAB-lab
  • Issues in evolutionary medicine.
    American journal of human biology : the official journal of the Human Biology Council, Vol. 17, No. 2. (r 2005), pp. 131-140.
    by SC Stearns
    posted to evol_med by bpcusack on 2008-08-13 16:34:42 as **
  • Histone replacement marks the boundaries of cis-regulatory domains.
    Science, Vol. 315, No. 5817. (9 March 2007), pp. 1408-1411.
    by Y Mito, JG Henikoff, S Henikoff
    posted to epigenetics by bpcusack on 2008-08-13 14:04:43 as ** along with 3 people and 1 group dpollard olympos epigenetics EisenLab
  • Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs
    Genome Res., Vol. 17, No. 5. (1 May 2007), pp. 556-565.
    by Jasmina Ponjavic, Chris P Ponting, Gerton Lunter
    posted to no-tag by bpcusack on 2008-08-13 14:02:20 as ** along with 6 people and 4 groups aprasad alexg dchughes djkt Stew elfar Bioinformatics EisenLab G4ID Genetics-of-Gambling
  • Are radical and conservative substitution rates useful statistics in molecular evolution?
    Journal of molecular evolution, Vol. 57, No. 4. (October 2003), pp. 467-478.
    by NG Smith
    posted to no-tag by bpcusack on 2008-08-12 13:19:55 as **
  • Modeling amino acid substitution patterns in orthologous and paralogous genes
    Molecular Phylogenetics and Evolution, Vol. 42, No. 2. (February 2007), pp. 298-307.
    by Gavin C Conant, Gunter P Wagner, Peter F Stadler
    posted to no-tag by bpcusack on 2008-08-12 13:18:26 as ** along with 1 person BioNica
  • Understanding relationship between sequence and functional evolution in yeast proteins.
    Genetica, Vol. 131, No. 2. (October 2007), pp. 151-156.
    by SH Kim, SV Yi
    posted to stats by bpcusack on 2008-08-12 12:56:38 as **
  • Natural Selection Shapes Genome-Wide Patterns of Copy-Number Polymorphism in Drosophila melanogaster
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1629-1631.
    by JJ Emerson, Margarida Cardoso-Moreira, Justin O Borevitz, Manyuan Long
    posted to cnv by bpcusack on 2008-08-12 12:25:10 as ** along with 8 people popgen emptyhb Neeperando balicea APRegier djkt skumagai dinnes
  • notes Extensive Gene Traffic on the Mammalian X Chromosome
    Science, Vol. 303, No. 5657. (23 January 2004), pp. 537-540.
    by JJ Emerson, Henrik Kaessmann, Esther Betran, Manyuan Long
    posted to stats by bpcusack on 2008-08-12 10:46:09 as ** along with 2 people and 1 group shoshin penka Nie
  • Reduced purifying selection prevails over positive selection in human copy number variant evolution.
    Genome research (7 August 2008)
    by Duc-Quang Q Nguyen, Caleb P P Webber, Jayne Hehir-Kwa, Rolph Pfundt, Joris Veltman, Chris P P Ponting
    posted to cnv by bpcusack on 2008-08-12 10:16:00 as ** along with 1 person aprasad
  • Pervasive positive selection on duplicated and non duplicated vertebrate protein coding genes
    Genome Res. (18 June 2008), gr.076992.108.
    by Romain Studer, Laurent Duret, Simon Penel, Marc Robinson-Rechavi
    posted to adaptation by bpcusack on 2008-08-12 10:12:28 as ** along with 1 person djkt
  • Mitochondrial targeting adaptation of the hominoid-specific glutamate dehydrogenase driven by positive Darwinian selection.
    PLoS genetics, Vol. 4, No. 8. (August 2008)
    by L Rosso, AC Marques, AS Reichert, H Kaessmann
    posted to no-tag by bpcusack on 2008-08-11 14:13:16 as ** along with 1 person shoshin
  • CpG dinucleotides and the mutation rate of non-CpG DNA.
    Genome research (7 August 2008)
    by Jean-Claude C Walser, Loïc Ponger, Anthony V V Furano
    posted to cpg by bpcusack on 2008-08-09 09:51:36 as **
  • Coding repeats and evolutionary "agility".
    BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 27, No. 6. (June 2005), pp. 581-587.
    by S Caburet, J Cocquet, D Vaiman, RA Veitia
    posted to evo_devo by bpcusack on 2008-08-08 17:21:28 as **
  • Molecular origins of rapid and continuous morphological evolution
    PNAS, Vol. 101, No. 52. (28 December 2004), pp. 18058-18063.
    by John W Fondon, Harold R Garner
    posted to evo_devo by bpcusack on 2008-08-08 17:20:57 as ** along with 3 people jphekman balicea jryanstevens
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