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antonkratzs library [114 articles]

Senaste artiklarna i antonkratzs bibliotek.
  • Compressed indexing and local alignment of DNA
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 791-797.
    by Lam, , Sung, , Tam, , Wong, , Yiu,
    posted to bwt by antonkratz on 2008-10-02 09:46:39 as ** along with 2 people cap1 lp2
  • Space-efficient whole genome comparisons with Burrows-Wheeler transforms.
    J Comput Biol, Vol. 12, No. 4. (May 2005), pp. 407-415.
    by RA Lippert
    posted to bwt by antonkratz on 2008-09-20 01:51:32 as ** along with 1 person nedwards
  • A space-efficient construction of the Burrows-Wheeler transform for genomic data.
    J Comput Biol, Vol. 12, No. 7. (September 2005), pp. 943-951.
    by RA Lippert, CM Mobarry, BP Walenz
    posted to bwt by antonkratz on 2008-09-20 01:50:24 as ** along with 2 people nedwards dleinhaeuser
  • Digital libraries and autonomous citation indexing
    IEEE Computer, Vol. 32 (1999), pp. 67-71.
    by Steve Lawrence, Lee C Giles, Kurt Bollacker
    posted to searchengine by antonkratz on 2008-09-09 15:25:17 as **
  • SUPPLEMENTARY MATERIAL Genome-wide analysis of mammalian promoter architecture and evolution
    by Carninci
    posted to cagecluster by antonkratz on 2008-08-30 09:40:50 as **
  • The functional consequences of alternative promoter use in mammalian genomes.
    Trends in genetics : TIG, Vol. 24, No. 4. (April 2008), pp. 167-177.
    by RV Davuluri, Y Suzuki, S Sugano, C Plass, TH Huang
    posted to alternative_promoter by antonkratz on 2008-08-23 06:40:43 as **
  • Alternative Promoters Influence Alternative Splicing at the Genomic Level
    PLoS ONE, Vol. 3, No. 6. (18 June 2008), e2377.
    by Dedong Xin, Landian Hu, Xiangyin Kong
    posted to alternative_splicing by antonkratz on 2008-08-13 10:41:19 as ** along with 2 people cabbagesofdoom raistrick
  • The evolving roles of alternative splicing.
    Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 273-282.
    by LF Lareau, RE Green, RS Bhatnagar, SE Brenner
    posted to alternative_splicing by antonkratz on 2008-08-13 06:32:51 as ** along with 3 people Cortel balicea qfwills
  • Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
    Genome Research (2005)
    by Kouichi Kimura1, Ai Wakamatsu, Yutaka Suzuki
    posted to alternative_promoter by antonkratz on 2008-08-07 10:43:08 as **
  • Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays.
    Science, Vol. 302, No. 5653. (19 December 2003), pp. 2141-2144.
    by JM Johnson, J Castle, P Garrett-Engele, Z Kan, PM Loerch, CD Armour, R Santos, EE Schadt, R Stoughton, DD Shoemaker
    posted to alternative_splicing by antonkratz on 2008-08-07 09:55:53 as ** along with 6 people and 2 groups Cortel kaspermunch jwestbrook mimulus_99 jo_davies austin Bioinformatics King_Lab
  • Different levels of alternative splicing among eukaryotes
    Nucleic Acids Research, Vol. 35, No. 1. (January 2007), pp. 125-131.
    by Kim, Eddo, Magen, Alon, Ast, Gil
    posted to alternative_splicing by antonkratz on 2008-08-07 09:54:18 as **
  • How prevalent is functional alternative splicing in the human genome?
    Trends in Genetics, Vol. 20, No. 2. (February 2004), pp. 68-71.
    by Rotem Sorek1, Ron Shamir, Gil Ast
    posted to as by antonkratz on 2008-08-07 09:12:24 as **
  • Complex controls: the role of alternative promoters in mammalian genomes
    Trends in Genetics, Vol. 19, No. 11. (November 2003), pp. 640-648.
    by Josette-Renée Landry, Dixie L Mager, Brian T Wilhelm
    posted to alternative_promoter by antonkratz on 2008-08-05 14:24:56 as **
  • Gene duplication and the properties of biological networks.
    J Mol Evol, Vol. 61, No. 6. (December 2005), pp. 758-764.
    by AL Hughes, R Friedman
    posted to alternative_splicing by antonkratz on 2008-08-05 13:53:26 as ** along with 1 person and 1 group tharris C. elegans / WormBase
  • Structural genomics analysis of alternative splicing and application to isoform structure modeling.
    Proc Natl Acad Sci U S A (14 December 2005)
    by Peng Wang, Bo Yan, Jun-Tao T Guo, Chindo Hicks, Ying Xu
    posted to alternative_splicing by antonkratz on 2008-08-05 13:44:34 as ** along with 4 people and 2 groups Cortel shuns marcius penka BioinfoCIPF SGU-CIPF
  • Alternative splicing of conserved exons is frequently species-specific in human and mouse.
    Trends Genet, Vol. 21, No. 2. (February 2005), pp. 73-77.
    by Q Pan, MA Bakowski, Q Morris, W Zhang, BJ Frey, TR Hughes, BJ Blencowe
    posted to as by antonkratz on 2008-08-05 13:40:46 as ** along with 1 person and 1 group kaspermunch Bioinformatics
  • Genome-wide analysis of mammalian promoter architecture and evolution
    Nature Genetics, Vol. 38, No. 6. (28 April 2006), pp. 626-635.
    by Piero Carninci, Albin Sandelin, Boris Lenhard, Shintaro Katayama, Kazuro Shimokawa, Jasmina Ponjavic, Colin AM Semple, Martin S Taylor, Pär G Engström, Martin C Frith, Alistair RR Forrest, Wynand B Alkema, Sin L Tan, Charles Plessy, Rimantas Kodzius, Timothy Ravasi, Takeya Kasukawa, Shiro Fukuda, Mutsumi Kanamori-Katayama, Yayoi Kitazume, Hideya Kawaji, Chikatoshi Kai, Mari Nakamura, Hideaki Konno, Kenji Nakano, Salim Mottagui-Tabar, Peter Arner, Alessandra Chesi, Stefano Gustincich, Francesca Persichetti, Harukazu Suzuki, Sean M Grimmond, Christine A Wells, Valerio Orlando, Claes Wahlestedt, Edison T Liu, Matthias Harbers, Jun Kawai, Vladimir B Bajic, David A Hume, Yoshihide Hayashizaki
    posted to cagecluster by antonkratz on 2008-07-29 09:39:53 as ** along with 11 people and 4 groups jfr xwbcn dchughes tabu samal nickluscombe xiaobeizhao cisevol eviledv gjuggler jasonflannick G4ID EBI-regulation Genetics-of-Gambling cis-regulatory-evolution
  • CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis
    Nucleic Acids Research
    by Hideya Kawaji, Takeya Kasukawa, Shiro Fukuda, Shintaro Katayama, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki
    posted to cagecluster by antonkratz on 2008-07-22 07:14:29 as **
  • Still Stratus Not Altocumulus: Further Evidence against the Date/Party Hub Distinction
    PLoS Biology, Vol. 5, No. 6. (1 June 2007), e154.
    by Nizar N Batada, Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, Bobby-Joe Breitkreutz, Laurence D Hurst, Mike Tyers
    posted to topology by antonkratz on 2008-07-03 05:49:58 as ** along with 3 people winterschlaefer carlk cdeane
  • Effects of topology on network evolution
    Nat Phys, Vol. 2, No. 8. (2006), pp. 532-536.
    by Panos Oikonomou, Philippe Cluzel
    posted to bialgorithms by antonkratz on 2008-06-25 11:33:10 as ** along with 4 people kentsis merazzle ganden watson
  • Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage.
    Proc Natl Acad Sci U S A, Vol. 100, No. 26. (23 December 2003), pp. 15776-15781.
    by T Shiraki, S Kondo, S Katayama, K Waki, T Kasukawa, H Kawaji, R Kodzius, A Watahiki, M Nakamura, T Arakawa, S Fukuda, D Sasaki, A Podhajska, M Harbers, J Kawai, P Carninci, Y Hayashizaki
    posted to cagecluster by antonkratz on 2008-06-20 05:09:57 as ** along with 6 people setar troels_marstrand xiaobeizhao olympos gjuggler jyuh
  • The multitasking genome
    Nature Genetics, Vol. 38, No. 6., pp. 608-609.
    by Thomas R Gingeras
    posted to cagecluster by antonkratz on 2008-06-16 04:14:48 as ** along with 2 people olympos bioyang
  • Large-scale clustering of CAGE tag expression data
    BMC Bioinformatics, Vol. 8 (21 May 2007), 161.
    by Kazuro Shimokawa, Yuko Okamura-Oho, Takio Kurita, Martin C Frith, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki
    posted to cagecluster by antonkratz on 2008-06-16 04:12:08 as ** along with 2 people gjuggler jyuh
  • A genomic view of alternative splicing.
    Nat Genet, Vol. 30, No. 1. (January 2002), pp. 13-19.
    by B Modrek, C Lee
    posted to as by antonkratz on 2008-06-16 03:39:59 as ** along with 7 people and 3 groups inesdesantiago setar Cortel balicea dalloliogm mirzazadeh srp33 Web2 splicing yeast
  • Intellectual property. Patents on human genes: an analysis of scope and claims.
    Science, Vol. 307, No. 5715. (11 March 2005), pp. 1566-1567.
    by J Paradise, L Andrews, T Holbrook
    posted to no-tag by antonkratz on 2008-06-14 02:53:20 as ** along with 4 people and 1 group Enro ladygoat perrywoo ajaymalik CGREL
  • Molecular basis of telapre vir resistance due to V36 and T54 mutations in the NS3-4 A protease of HCV
    Genome Biology, Vol. 9 (23 January 2008), R16.
    by Christoph Welsch, Francisco S Domingues, Simone Susser, Iris Antes, Christoph Hartmann, Gabriele Mayr, Andreas Schlicker, Christoph Sarrazin, Mario Albrecht, Stefan Zeuzem, Thomas Lengauer
    posted to bialgorithms by antonkratz on 2008-05-27 07:44:29 as ** along with 1 person mccownm
  • K-core decomposition of Internet graphs: hierarchies, self-similarity and measurement biases
    (16 Apr 2008)
    by José I Alvarez-Hamelin, Luca Dall'asta, Alain Barrat, Alessandro Vespignani
    posted to bialgorithms by antonkratz on 2008-05-25 11:19:21 as ** along with 1 person thecolourblue
  • An O(m) Algorithm for Cores Decomposition of Networks
    (25 Oct 2003)
    by V Batagelj, M Zaversnik
    posted to bialgorithms by antonkratz on 2008-05-25 11:00:08 as **
  • Using expander graphs to find vertex connectivity
    J. ACM, Vol. 53, No. 5. (September 2006), pp. 800-844.
    by Harold N Gabow
    posted to bialgorithms by antonkratz on 2008-05-14 06:23:08 as **
  • Parallel depth first search. Part I. implementation
    Int. J. Parallel Program., Vol. 16, No. 6. (December 1987), pp. 479-499.
    by Nageshwara V Rao, Vipin Kumar
    posted to bialgorithms by antonkratz on 2008-05-11 14:05:27 as **
  • notes Depth-First Search and Linear Graph Algorithms
    SIAM Journal on Computing, Vol. 1, No. 2. (1972), pp. 146-160.
    by Robert Tarjan
    posted to bialgorithms by antonkratz on 2008-05-11 13:52:43 as ** along with 4 people naegele djlin timotay muraken
  • Evolution of gene regulatory networks: Robustness as an emergent property of evolution
    Physica A: Statistical Mechanics and its Applications, Vol. 387, No. 8-9. (15 March 2008), pp. 2170-2186.
    by Arun Krishnan, Masaru Tomita, Alessandro Giuliani
    posted to grn by antonkratz on 2008-05-09 07:41:28 as **
  • A note on two problems in connexion with graphs
    Numerische Mathematik, Vol. 1, No. 1. (1 December 1959), pp. 269-271.
    by EW Dijkstra
    posted to bialgorithms by antonkratz on 2008-05-08 06:50:25 as ** along with 4 people and 1 group ben500 hp2oo1 mpotamias dylanwalker Video based Animation for People
  • A protein interaction map of Drosophila melanogaster.
    Science, Vol. 302, No. 5651. (5 December 2003), pp. 1727-1736.
    by L Giot, JS Bader, C Brouwer, A Chaudhuri, B Kuang, Y Li, YL Hao, CE Ooi, B Godwin, E Vitols, G Vijayadamodar, P Pochart, H Machineni, M Welsh, Y Kong, B Zerhusen, R Malcolm, Z Varrone, A Collis, M Minto, S Burgess, L McDaniel, E Stimpson, F Spriggs, J Williams, K Neurath, N Ioime, M Agee, E Voss, K Furtak, R Renzulli, N Aanensen, S Carrolla, E Bickelhaupt, Y Lazovatsky, A DaSilva, J Zhong, CA Stanyon, RL Finley, KP White, M Braverman, T Jarvie, S Gold, M Leach, J Knight, RA Shimkets, MP McKenna, J Chant, JM Rothberg
    posted to bialgorithms by antonkratz on 2008-04-28 06:14:40 as ** along with 13 people and 2 groups dragonrez shivaram lfriedl nuke2005 lyongu sesejun maryee xico memming eukfn csanford carlk cerca kdl WetBiology
  • No statistical support for correlation between the positions of protein interaction sites and alternatively spliced regions.
    BMC Bioinformatics, Vol. 5 (19 April 2004)
    by MN Offman, RN Nurtdinov, MS Gelfand, D Frishman
    posted to domains aktuell by antonkratz on 2008-04-23 07:30:19 as ** along with 1 person ramensky
  • Prediction of Protein Functions Based on K-Cores of Protein-Protein Interaction Networks and Amino Acid Sequences
    Genome Informatics 14: 498499 (2003)
    by Md
    posted to bialgorithms by antonkratz on 2008-04-21 10:35:02 as ** along with 1 person thecolourblue
  • Peeling the yeast protein network.
    Proteomics, Vol. 5, No. 2. (February 2005), pp. 444-449.
    by S Wuchty, E Almaas
    posted to bialgorithms by antonkratz on 2008-04-21 10:24:21 as ** along with 1 person shivaram
  • iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions
    Bioinformatics, Vol. 21, No. 3. (01 February 2005), 410.
    by Robert D Finn, Mhairi Marshall, Alex Bateman
    posted to pfam by antonkratz on 2008-04-05 08:52:27 as ** along with 6 people and 2 groups mdimmic barry chad_davis choonpeng massivemayhem kintoki structural_bioinformatics Bioinformatics
  • The Pfam protein families database.
    Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 276-280.
    by A Bateman, E Birney, L Cerruti, R Durbin, L Etwiller, SR Eddy, S Griffiths-Jones, KL Howe, M Marshall, EL Sonnhammer
    posted to pfam by antonkratz on 2008-04-05 08:50:50 as ** along with 9 people and 1 group tharris ziquje Cortel cjeans mirzazadeh wenhan IrinaMoreira bandrewfox gulkur C. elegans / WormBase
  • Pfam: multiple sequence alignments and HMM-profiles of protein domains.
    Nucleic Acids Res, Vol. 26, No. 1. (1 January 1998), pp. 320-322.
    by EL Sonnhammer, SR Eddy, E Birney, A Bateman, R Durbin
    posted to pfam by antonkratz on 2008-04-05 08:49:28 as ** along with 4 people and 1 group tharris cjeans jteyra gulkur C. elegans / WormBase
  • Inferring Alternative Splicing Patterns in Mouse from a Full-Length cDNA Library and Microarray Data
    Genome Res., Vol. 12, No. 8. (1 August 2002), pp. 1286-1293.
    by Hiromi Kochiwa, Ryosuke Suzuki, Takanori Washio, Rintaro Saito, The RIKEN Phase, Hidemasa Bono, Piero Carninci, Yasushi Okazaki, Rika Miki, Yoshihide Hayashizaki, Masaru Tomita
    posted to prof_takanori_washio by antonkratz on 2008-03-03 09:56:03 as **
  • Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa)
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1758-1763.
    by Noriyuki Kitagawa, Takanori Washio, Shunichi Kosugi, Tomoya Yamashita, Kenji Higashi, Hiroshi Yanagawa, Kenichi Higo, Koji Satoh, Yasuhiro Ohtomo, Tomomi Sunako, Kazuo Murakami, Kenichi Matsubara, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Shoshi Kikuchi, Masaru Tomita
    posted to prof_takanori_washio by antonkratz on 2008-03-03 09:50:58 as **
  • Computational comparative analyses of alternative splicing regulation using full-length cDNA of various eukaryotes.
    RNA, Vol. 10, No. 7. (July 2004), pp. 1005-1018.
    by H Itoh, T Washio, M Tomita
    posted to prof_takanori_washio by antonkratz on 2008-03-03 09:47:43 as ** along with 2 people and 1 group kaspermunch raylim Bioinformatics
  • Increase of functional diversity by alternative splicing
    Trends in Genetics, Vol. 19, No. 3. (March 2003), pp. 124-128.
    by Evgenia V Kriventseva, Ina Koch, Rolf Apweiler, Martin Vingron, Peer Bork, Mikhail S Gelfand, Shamil Sunyaev
    posted to assessing by antonkratz on 2008-02-07 05:42:54 as **
  • The Protein Identifier Cross-Reference (PICR) service: reconciling protein identifiers across multiple source databases
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Richard Cote, Philip Jones, Lennart Martens, Samuel Kerrien, Florian Reisinger, Quan Lin, Rasko Leinonen, Rolf Apweiler, Henning Hermjakob
    posted to proteins by antonkratz on 2008-01-12 07:49:29 as ** along with 8 people jyuh dullhunk niallhaslam gmonce barriot dansullivanblk tny kynn
  • Complex controls: the role of alternative promoters in mammalian genomes
    Trends in Genetics, Vol. 19, No. 11. (2003), pp. 640-648.
    by JR Landry, DL Mager, BT Wilhelm
    posted to promoter by antonkratz on 2007-11-11 06:25:50 as **
  • ASAP: the Alternative Splicing Annotation Project
    Nucl. Acids Res., Vol. 31, No. 1. (1 January 2003), pp. 101-105.
    by Christopher Lee, Levan Atanelov, Barmak Modrek, Yi Xing
    posted to assessing by antonkratz on 2007-11-05 08:59:34 as **
  • notes Large scale study of protein domain distribution in the context of alternative splicing.
    Nucleic Acids Res, Vol. 31, No. 16. (15 August 2003), pp. 4828-4835.
    by S Liu, RB Altman
    posted to assessing by antonkratz on 2007-11-05 08:42:16 as ** along with 1 person Cortel
  • notes Increase of functional diversity by alternative splicing
    Trends in Genetics, Vol. 2003, No. 19., pp. 124-128.
    by EV Kriventseva, I Koch, R Apweiler
    posted to assessing by antonkratz on 2007-11-05 08:32:39 as **
  • The Genome Sequence of Drosophila melanogaster
    Science, Vol. 287, No. 5461. (24 March 2000), pp. 2185-2195.
    by Mark D Adams, Susan E Celniker, Robert A Holt, Craig J Venter
    posted to no-tag by antonkratz on 2007-10-21 16:35:02 as ** along with 8 people dragonrez RMGraze Chue treangen bluto mimulus_99 brant hsekiguc
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