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Pao-Yangs library [59 articles]

Senaste artiklarna i Pao-Yangs bibliotek ordnat efter prioritet.
  • The roles of the multiple CheW and CheA homologues in chemotaxis and in chemoreceptor localization in Rhodobacter sphaeroides.
    Mol Microbiol, Vol. 40, No. 6. (June 2001), pp. 1261-1272.
    by AC Martin, GH Wadhams, JP Armitage
    posted to chea chemotaxisrhodobacter chew sphaeroides by Pao-Yang on 2008-02-20 12:01:32 as **** along with 1 person chrn
  • Polar localization of CheA2 in Rhodobacter sphaeroides requires specific Che homologs.
    J Bacteriol, Vol. 185, No. 16. (August 2003), pp. 4667-4671.
    by AC Martin, U Nair, JP Armitage, JR Maddock
    posted to chemotaxisrhodobacter localization sphaeroides by Pao-Yang on 2008-02-20 12:00:40 as ****
  • Requirements for chemotaxis protein localization in Rhodobacter sphaeroides
    Molecular Microbiology, Vol. 58, No. 3. (November 2005), pp. 895-902.
    by George H Wadhams, Angela C Martin, Anna V Warren, Judith P Armitage
    posted to chemotaxis rhodobacter sphaeroides by Pao-Yang on 2008-02-20 12:00:03 as **** along with 1 person RebeccaHamer
  • A systems biology approach for pathway level analysis
    Genome Res. (4 September 2007), gr.6202607.
    by Sorin Draghici, Purvesh Khatri, Adi L Tarca, Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero
    posted to biology pathway systems by Pao-Yang on 2007-11-26 14:23:21 as **** along with 16 people and 3 groups pengchy tmmurali dragonrez jfr gurkanbebek grahamc shigepong zwang cabbagezs cerami xingxu shikin idonaldson thomaskelder heliopais AlexanderPico Bioinformatics ParkinsonLab_at_MaRS OPIG
  • Model-based clustering for social networks
    Journal of the Royal Statistical Society: Series A (Statistics in Society), Vol. 170, No. 2. (March 2007), pp. 301-354.
    by Handcock, S Mark, Raftery, E Adrian, Tantrum, M Jeremy
    posted to clustering model model-based network by Pao-Yang on 2007-11-25 14:27:59 as **** along with 2 people and 2 groups galyardt ctacmo Statistics_and_Social_Science Biostatistics
  • The third chemotaxis locus of Rhodobacter sphaeroides is essential for chemotaxis.
    Mol Microbiol, Vol. 46, No. 4. (November 2002), pp. 1081-1094.
    by SL Porter, AV Warren, AC Martin, JP Armitage
    posted to chemotaxis rhodobacter sphaeroides by Pao-Yang on 2008-02-20 12:07:15 as *** along with 1 person RebeccaHamer
  • Evidence for two chemosensory pathways in Rhodobacter sphaeroides.
    Mol Microbiol, Vol. 26, No. 5. (December 1997), pp. 1083-1096.
    by PA Hamblin, BA Maguire, RN Grishanin, JP Armitage
    posted to chemosensory chemotaxis pathways rhodobacter sphaeroides by Pao-Yang on 2008-02-20 12:03:37 as ***
  • Modulated receptor interactions in bacterial transmembrane signaling
    Trends in Cell Biology, Vol. 14, No. 9. (September 2004), pp. 478-482.
    by Daniel J Webre, Peter M Wolanin, Jeffry B Stock
    posted to chemotaxis modular by Pao-Yang on 2008-02-08 15:17:36 as *** along with 1 person xingxu
  • Receptor clustering as a cellular mechanism to control sensitivity.
    Nature, Vol. 393, No. 6680. (7 May 1998), pp. 85-88.
    by D Bray, MD Levin, CJ Morton-Firth
    posted to chemotaxis clustering by Pao-Yang on 2008-02-05 11:24:37 as *** along with 1 person chrn
  • Evolutionary predictions of binding surfaces and interactions
    Current Opinion in Structural Biology, Vol. 12, No. 1. (1 February 2002), pp. 21-27.
    by Olivier Lichtarge, Mathew E Sowa
    posted to evolution evolutionary functional interactions protein-protein sites trace by Pao-Yang on 2008-02-04 16:35:53 as *** along with 1 person cjeans
  • Systems biology of bacterial chemotaxis.
    Curr Opin Microbiol, Vol. 9, No. 2. (April 2006), pp. 187-192.
    by MD Baker, PM Wolanin, JB Stock
    posted to chemotaxis by Pao-Yang on 2008-01-31 17:31:54 as *** along with 2 people chrn RebeccaHamer
  • Design and diversity in bacterial chemotaxis: a comparative study in Escherichia coli and Bacillus subtilis.
    PLoS Biol, Vol. 2, No. 2. (February 2004)
    by CV Rao, JR Kirby, AP Arkin
    posted to chemotaxis comparison by Pao-Yang on 2008-01-31 17:31:26 as *** along with 4 people and 1 group chrn lingchong BUiGEM RebeccaHamer BUiGEM
  • Phosphotransfer in Rhodobacter sphaeroides Chemotaxis
    Journal of Molecular Biology, Vol. 324, No. 1. (15 November 2002), pp. 35-45.
    by Steven L Porter, Judith P Armitage
    posted to chemotaxis phosphotransfer by Pao-Yang on 2008-01-31 17:24:16 as *** along with 1 person RebeccaHamer
  • Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins.
    J Mol Biol, Vol. 307, No. 5. (13 April 2001), pp. 1487-1502.
    by R Landgraf, I Xenarios, D Eisenberg
    posted to evolutionary trace by Pao-Yang on 2008-01-22 12:00:50 as *** along with 6 people and 2 groups barry pansapiens sriram_s cjeans mingzhi marti structural_bioinformatics Bioinformatics
  • Identification and localization of a methyl-accepting chemotaxis protein in Rhodobacter sphaeroides.
    Mol Microbiol, Vol. 36, No. 6. (June 2000), pp. 1222-1233.
    by GH Wadhams, AC Martin, JP Armitage
    posted to chemotaxis by Pao-Yang on 2008-01-18 14:29:44 as *** along with 2 people chrn RebeccaHamer
  • Chemotactic control of the two flagellar systems of Rhodobacter sphaeroides is mediated by different sets of CheY and FliM proteins.
    J Bacteriol, Vol. 189, No. 22. (November 2007), pp. 8397-8401.
    by AM del Campo, T Ballado, J de la Mora, S Poggio, L Camarena, G Dreyfus
    posted to no-tag by Pao-Yang on 2008-01-18 14:27:56 as *** along with 1 person RebeccaHamer
  • Making sense of it all: bacterial chemotaxis
    Nature Reviews Molecular Cell Biology, Vol. 5, No. 12. (01 December 2004), pp. 1024-1037.
    by George H Wadhams, Judith P Armitage
    posted to chemotaxis by Pao-Yang on 2008-01-18 12:11:27 as *** along with 5 people and 1 group rklancer chrn balabu BUiGEM RebeccaHamer BUiGEM
  • The CheYs of Rhodobacter sphaeroides.
    J Biol Chem, Vol. 281, No. 43. (27 October 2006), pp. 32694-32704.
    by SL Porter, GH Wadhams, AC Martin, ED Byles, DE Lancaster, JP Armitage
    posted to chemotaxis chey by Pao-Yang on 2008-01-18 12:08:43 as *** along with 2 people chrn RebeccaHamer
  • Coverage and error models of protein-protein interaction data by directed graph analysis
    Genome Biology, Vol. 8 (10 September 2007), R186.
    by Tony Chiang, Denise Scholtens, Deepayan Sarkar, Robert Gentleman, Wolfgang Huber
    posted to coverage error interaction network protein by Pao-Yang on 2007-11-29 10:38:49 as *** along with 5 people Yanno jfr chad_davis grahamc winterschlaefer
  • Exploring Biological Network Structure Using Exponential Random Graph Models.
    Bioinformatics (20 July 2007)
    by Zachary M M Saul, Vladimir Filkov
    posted to exponential graph network radom structure by Pao-Yang on 2007-11-26 14:39:55 as *** along with 3 people and 2 groups tmmurali grahamc iris_2001 ParkinsonLab_at_MaRS OPIG
  • Protein-Protein Interaction Hotspots Carved into Sequences.
    PLoS Comput Biol, Vol. 3, No. 7. (13 July 2007)
    by Yanay Ofran, Burkhard Rost
    posted to hotspots interaction protein sequence by Pao-Yang on 2007-11-26 14:37:06 as *** along with 7 people and 3 groups bicko dchughes grahamc cjeans zwang Jporci higueruelo G4ID ParkinsonLab_at_MaRS Genetics-of-Gambling
  • The protein network of bacterial motility
    Mol Syst Biol, Vol. 3 (31 July 2007)
    by Seesandra V Rajagopala, Bjorn Titz, Johannes Goll, Jodi R Parrish, Katrin Wohlbold, Matthew T Mckevitt, Timothy Palzkill, Hirotada Mori, Russell L Finley, Peter Uetz
    posted to bacterial interaction motility network protein by Pao-Yang on 2007-11-26 14:29:36 as *** along with 6 people and 4 groups aswin grahamc jmrivort zwang carlk cerca G-quadruplex Supramolecular ParkinsonLab_at_MaRS OPIG
  • Cotranslational protein folding--fact or fiction?
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by CM Deane, M Dong, FP Huard, BK Lance, GR Wood
    posted to cotranslational folding protein by Pao-Yang on 2007-11-22 12:14:28 as *** along with 3 people ucbcjbm cdeane saunders
  • Bacterial chemotaxis: a field in motion
    Current Opinion in Structural Biology, Vol. 5, No. 6. (December 1995), pp. 744-751.
    by Ann M Stock, Sherry L Mowbray
    posted to chemotaxis by Pao-Yang on 2008-02-08 15:23:34 as **
  • An improved method for identifying functionally linked proteins using phylogenetic profiles
    BMC Bioinformatics, Vol. 8, No. Suppl 4. (2007)
    by Shawn Cokus, Sayaka Mizutani, Matteo Pellegrini
    posted to no-tag by Pao-Yang on 2008-02-07 17:34:51 as **
  • Biochemical study of multiple CheY response regulators of the chemotactic pathway of Rhodobacter sphaeroides.
    J Bacteriol, Vol. 186, No. 15. (August 2004), pp. 5172-5177.
    by A Ferré, J De La Mora, T Ballado, L Camarena, G Dreyfus
    posted to chemotaxis chey by Pao-Yang on 2008-01-18 14:28:45 as **
  • Reconstruction of ancestral protein interaction networks for the bZIP transcription factors
    Proceedings of the National Academy of Sciences (12 December 2007), 0706339104.
    by John W Pinney, Grigoris D Amoutzias, Magnus Rattray, David L Robertson
    posted to no-tag by Pao-Yang on 2007-12-13 12:48:16 as ** along with 4 people tmmurali grahamc cjeans hplatero
  • Learning to predict protein-protein interactions from protein sequences.
    Bioinformatics, Vol. 19, No. 15. (12 October 2003), pp. 1875-1881.
    by SM Gomez, WS Noble, A Rzhetsky
    posted to interactions methods prediction predictive protein sequence by Pao-Yang on 2007-11-29 10:37:50 as ** along with 4 people maryee grahamc cjeans wilbur
  • Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets
    Nature Genetics, Vol. 38, No. 3. (24 February 2006), pp. 285-293.
    by TKB Gandhi, Jun Zhong, Suresh Mathivanan, L Karthick, KN Chandrika, Sujatha S Mohan, Salil Sharma, Stefan Pinkert, Shilpa Nagaraju, Balamurugan Periaswamy, Goparani Mishra, Kannabiran Nandakumar, Beiyi Shen, Nandan Deshpande, Rashmi Nayak, Malabika Sarker, Jef D Boeke, Giovanni Parmigiani, Jörg Schultz, Joel S Bader, Akhilesh Pandey
    posted to comparison human interactome protein worm yeast by Pao-Yang on 2007-11-29 10:36:48 as ** along with 12 people and 2 groups aprildh31 balajis indigoviolet tny spavey TheresaNiederberger cjeans alwinpremanand dejori pmendes carlk cerca EisenLab FAB-lab
  • Evaluation of clustering algorithms for protein-protein interaction networks
    BMC Bioinformatics, Vol. 7 (06 November 2006), 488.
    by Sylvain Brohee, Jacques van Helden
    posted to algorithms clustering interaction network protein by Pao-Yang on 2007-11-29 10:35:26 as ** along with 15 people and 1 group pdelosri jfr chad_davis balajis nirfriedman dquest grahamc cjeans hpaces oktie carlk Borelli AbnerCYH cerca ethkim EPFL_SB_ITP_LBS
  • A topologically related singularity suggests a maximum preferred size for protein domains
    Proteins: Structure, Function, and Bioinformatics, Vol. 66, No. 3. (2007), pp. 621-629.
    by Joseph P Zbilut, Gek H Chua, Arun Krishnan, Cecilia Bossa, Kristian Rother, Charles L Webber, Alessandro Giuliani
    posted to domains for maximum protein size by Pao-Yang on 2007-11-29 10:34:00 as ** along with 2 people choonpeng cdeane
  • Evolution favors protein mutational robustness in sufficiently large populations
    BMC Biology, Vol. 5, No. 1. (2007)
    by Jesse Bloom, Zhongyi Lu, David Chen, Alpan Raval, Ophelia Venturelli, Frances Arnold
    posted to no-tag by Pao-Yang on 2007-11-29 10:33:19 as ** along with 3 people cdeane bpcusack cambray
  • Identification of functional modules from conserved ancestral protein protein interactions.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by J Dutkowski, J Tiuryn
    posted to conserved functional interactions modules protein by Pao-Yang on 2007-11-26 14:35:00 as ** along with 1 person and 1 group grahamc ParkinsonLab_at_MaRS
  • Influence of degree correlations on network structure and stability in protein-protein interaction networks
    BMC Bioinformatics, Vol. 8 (09 August 2007), 297.
    by Caroline C Friedel, Ralf Zimmer
    posted to degreenetwork interaction networks structureprotein by Pao-Yang on 2007-11-26 14:33:00 as ** along with 1 person and 1 group grahamc ParkinsonLab_at_MaRS
  • Tools for Visually Exploring Biological Networks.
    Bioinformatics (25 August 2007)
    by Matthew Suderman, Michael Hallett
    posted to assessment biological networks visulization by Pao-Yang on 2007-11-26 14:27:57 as ** along with 12 people and 3 groups jyuh icases dullhunk sebastien_vigneau grahamc sgoetz cabbagezs cerami loopback007 schuylrp AlexanderPico hryk ParkinsonLab_at_MaRS TNT Cancer_Stem_Cells
  • Modular co-evolution of metabolic networks
    BMC Bioinformatics, Vol. 8 (27 August 2007), 311.
    by Jing Zhao, Guo-Hui Ding, Lin Tao, Hong Yu, Zhong-Hao Yu, Jian-Hua Luo, Zhi-Wei Cao, Yi-Xue Li
    posted to evolution metabolic modular networks by Pao-Yang on 2007-11-26 14:25:42 as ** along with 1 person and 1 group grahamc ParkinsonLab_at_MaRS
  • Is proteomics the new genomics?
    Cell, Vol. 130, No. 3. (10 August 2007), pp. 395-398.
    by J Cox, M Mann
    posted to proteomics by Pao-Yang on 2007-11-26 14:20:46 as ** along with 4 people and 1 group grahamc fishtank oelemento anwazo ParkinsonLab_at_MaRS
  • Graph Sharpening plus Graph Integration: A Synergy that Improves Protein Functional Classification.
    Bioinformatics (31 October 2007)
    by Hyunjung Shin, Andreas Martin M Lisewski, Olivier Lichtarge
    posted to no-tag by Pao-Yang on 2007-11-25 20:45:30 as ** along with 2 people tmmurali bootsy
  • InterPreTS: protein interaction prediction through tertiary structure.
    Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 161-162.
    by P Aloy, RB Russell
    posted to binding interactions protein structure by Pao-Yang on 2007-11-25 14:18:05 as ** along with 5 people baaden bicko chad_davis henschel ruvido
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