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Pao-Yangs library [59 articles]

Senaste artiklarna i Pao-Yangs bibliotek.
  • The third chemotaxis locus of Rhodobacter sphaeroides is essential for chemotaxis.
    Mol Microbiol, Vol. 46, No. 4. (November 2002), pp. 1081-1094.
    by SL Porter, AV Warren, AC Martin, JP Armitage
    posted to chemotaxis rhodobacter sphaeroides by Pao-Yang on 2008-02-20 12:07:15 as *** along with 1 person RebeccaHamer
  • Evidence for two chemosensory pathways in Rhodobacter sphaeroides.
    Mol Microbiol, Vol. 26, No. 5. (December 1997), pp. 1083-1096.
    by PA Hamblin, BA Maguire, RN Grishanin, JP Armitage
    posted to chemosensory chemotaxis pathways rhodobacter sphaeroides by Pao-Yang on 2008-02-20 12:03:37 as ***
  • The roles of the multiple CheW and CheA homologues in chemotaxis and in chemoreceptor localization in Rhodobacter sphaeroides.
    Mol Microbiol, Vol. 40, No. 6. (June 2001), pp. 1261-1272.
    by AC Martin, GH Wadhams, JP Armitage
    posted to chea chemotaxisrhodobacter chew sphaeroides by Pao-Yang on 2008-02-20 12:01:32 as **** along with 1 person chrn
  • Polar localization of CheA2 in Rhodobacter sphaeroides requires specific Che homologs.
    J Bacteriol, Vol. 185, No. 16. (August 2003), pp. 4667-4671.
    by AC Martin, U Nair, JP Armitage, JR Maddock
    posted to chemotaxisrhodobacter localization sphaeroides by Pao-Yang on 2008-02-20 12:00:40 as ****
  • Requirements for chemotaxis protein localization in Rhodobacter sphaeroides
    Molecular Microbiology, Vol. 58, No. 3. (November 2005), pp. 895-902.
    by George H Wadhams, Angela C Martin, Anna V Warren, Judith P Armitage
    posted to chemotaxis rhodobacter sphaeroides by Pao-Yang on 2008-02-20 12:00:03 as **** along with 1 person RebeccaHamer
  • Bacterial chemotaxis: a field in motion
    Current Opinion in Structural Biology, Vol. 5, No. 6. (December 1995), pp. 744-751.
    by Ann M Stock, Sherry L Mowbray
    posted to chemotaxis by Pao-Yang on 2008-02-08 15:23:34 as **
  • Modulated receptor interactions in bacterial transmembrane signaling
    Trends in Cell Biology, Vol. 14, No. 9. (September 2004), pp. 478-482.
    by Daniel J Webre, Peter M Wolanin, Jeffry B Stock
    posted to chemotaxis modular by Pao-Yang on 2008-02-08 15:17:36 as *** along with 1 person xingxu
  • An improved method for identifying functionally linked proteins using phylogenetic profiles
    BMC Bioinformatics, Vol. 8, No. Suppl 4. (2007)
    by Shawn Cokus, Sayaka Mizutani, Matteo Pellegrini
    posted to no-tag by Pao-Yang on 2008-02-07 17:34:51 as **
  • Receptor clustering as a cellular mechanism to control sensitivity.
    Nature, Vol. 393, No. 6680. (7 May 1998), pp. 85-88.
    by D Bray, MD Levin, CJ Morton-Firth
    posted to chemotaxis clustering by Pao-Yang on 2008-02-05 11:24:37 as *** along with 1 person chrn
  • Evolutionary predictions of binding surfaces and interactions
    Current Opinion in Structural Biology, Vol. 12, No. 1. (1 February 2002), pp. 21-27.
    by Olivier Lichtarge, Mathew E Sowa
    posted to evolution evolutionary functional interactions protein-protein sites trace by Pao-Yang on 2008-02-04 16:35:53 as *** along with 1 person cjeans
  • Systems biology of bacterial chemotaxis.
    Curr Opin Microbiol, Vol. 9, No. 2. (April 2006), pp. 187-192.
    by MD Baker, PM Wolanin, JB Stock
    posted to chemotaxis by Pao-Yang on 2008-01-31 17:31:54 as *** along with 2 people chrn RebeccaHamer
  • Design and diversity in bacterial chemotaxis: a comparative study in Escherichia coli and Bacillus subtilis.
    PLoS Biol, Vol. 2, No. 2. (February 2004)
    by CV Rao, JR Kirby, AP Arkin
    posted to chemotaxis comparison by Pao-Yang on 2008-01-31 17:31:26 as *** along with 4 people and 1 group chrn lingchong BUiGEM RebeccaHamer BUiGEM
  • Phosphotransfer in Rhodobacter sphaeroides Chemotaxis
    Journal of Molecular Biology, Vol. 324, No. 1. (15 November 2002), pp. 35-45.
    by Steven L Porter, Judith P Armitage
    posted to chemotaxis phosphotransfer by Pao-Yang on 2008-01-31 17:24:16 as *** along with 1 person RebeccaHamer
  • Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins.
    J Mol Biol, Vol. 307, No. 5. (13 April 2001), pp. 1487-1502.
    by R Landgraf, I Xenarios, D Eisenberg
    posted to evolutionary trace by Pao-Yang on 2008-01-22 12:00:50 as *** along with 6 people and 2 groups barry pansapiens sriram_s cjeans mingzhi marti structural_bioinformatics Bioinformatics
  • Identification and localization of a methyl-accepting chemotaxis protein in Rhodobacter sphaeroides.
    Mol Microbiol, Vol. 36, No. 6. (June 2000), pp. 1222-1233.
    by GH Wadhams, AC Martin, JP Armitage
    posted to chemotaxis by Pao-Yang on 2008-01-18 14:29:44 as *** along with 2 people chrn RebeccaHamer
  • Biochemical study of multiple CheY response regulators of the chemotactic pathway of Rhodobacter sphaeroides.
    J Bacteriol, Vol. 186, No. 15. (August 2004), pp. 5172-5177.
    by A Ferré, J De La Mora, T Ballado, L Camarena, G Dreyfus
    posted to chemotaxis chey by Pao-Yang on 2008-01-18 14:28:45 as **
  • Chemotactic control of the two flagellar systems of Rhodobacter sphaeroides is mediated by different sets of CheY and FliM proteins.
    J Bacteriol, Vol. 189, No. 22. (November 2007), pp. 8397-8401.
    by AM del Campo, T Ballado, J de la Mora, S Poggio, L Camarena, G Dreyfus
    posted to no-tag by Pao-Yang on 2008-01-18 14:27:56 as *** along with 1 person RebeccaHamer
  • Making sense of it all: bacterial chemotaxis
    Nature Reviews Molecular Cell Biology, Vol. 5, No. 12. (01 December 2004), pp. 1024-1037.
    by George H Wadhams, Judith P Armitage
    posted to chemotaxis by Pao-Yang on 2008-01-18 12:11:27 as *** along with 5 people and 1 group rklancer chrn balabu BUiGEM RebeccaHamer BUiGEM
  • The CheYs of Rhodobacter sphaeroides.
    J Biol Chem, Vol. 281, No. 43. (27 October 2006), pp. 32694-32704.
    by SL Porter, GH Wadhams, AC Martin, ED Byles, DE Lancaster, JP Armitage
    posted to chemotaxis chey by Pao-Yang on 2008-01-18 12:08:43 as *** along with 2 people chrn RebeccaHamer
  • Reconstruction of ancestral protein interaction networks for the bZIP transcription factors
    Proceedings of the National Academy of Sciences (12 December 2007), 0706339104.
    by John W Pinney, Grigoris D Amoutzias, Magnus Rattray, David L Robertson
    posted to no-tag by Pao-Yang on 2007-12-13 12:48:16 as ** along with 4 people hplatero tmmurali grahamc cjeans
  • An assessment of the uses of homologous interactions
    Bioinformatics (27 November 2007), btm576.
    by Ramazan Saeed, Charlotte Deane
    posted to gsn gsp homologous interactions negative by Pao-Yang on 2007-12-13 12:47:15 as read along with 7 people samesense chad_davis grahamc cjeans laughcry mingzhi cdeane
  • Coverage and error models of protein-protein interaction data by directed graph analysis
    Genome Biology, Vol. 8 (10 September 2007), R186.
    by Tony Chiang, Denise Scholtens, Deepayan Sarkar, Robert Gentleman, Wolfgang Huber
    posted to coverage error interaction network protein by Pao-Yang on 2007-11-29 10:38:49 as *** along with 5 people Yanno jfr chad_davis grahamc winterschlaefer
  • Learning to predict protein-protein interactions from protein sequences.
    Bioinformatics, Vol. 19, No. 15. (12 October 2003), pp. 1875-1881.
    by SM Gomez, WS Noble, A Rzhetsky
    posted to interactions methods prediction predictive protein sequence by Pao-Yang on 2007-11-29 10:37:50 as ** along with 4 people maryee grahamc cjeans wilbur
  • Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets
    Nature Genetics, Vol. 38, No. 3. (24 February 2006), pp. 285-293.
    by TKB Gandhi, Jun Zhong, Suresh Mathivanan, L Karthick, KN Chandrika, Sujatha S Mohan, Salil Sharma, Stefan Pinkert, Shilpa Nagaraju, Balamurugan Periaswamy, Goparani Mishra, Kannabiran Nandakumar, Beiyi Shen, Nandan Deshpande, Rashmi Nayak, Malabika Sarker, Jef D Boeke, Giovanni Parmigiani, Jörg Schultz, Joel S Bader, Akhilesh Pandey
    posted to comparison human interactome protein worm yeast by Pao-Yang on 2007-11-29 10:36:48 as ** along with 10 people and 2 groups cerca carlk balajis indigoviolet tny spavey cjeans alwinpremanand dejori pmendes EisenLab FAB-lab
  • Evaluation of clustering algorithms for protein-protein interaction networks
    BMC Bioinformatics, Vol. 7 (06 November 2006), 488.
    by Sylvain Brohee, Jacques van Helden
    posted to algorithms clustering interaction network protein by Pao-Yang on 2007-11-29 10:35:26 as ** along with 12 people and 1 group Borelli carlk pdelosri jfr chad_davis balajis nirfriedman dquest grahamc cjeans hpaces oktie EPFL_SB_ITP_LBS
  • A topologically related singularity suggests a maximum preferred size for protein domains
    Proteins: Structure, Function, and Bioinformatics, Vol. 66, No. 3. (2007), pp. 621-629.
    by Joseph P Zbilut, Gek H Chua, Arun Krishnan, Cecilia Bossa, Kristian Rother, Charles L Webber, Alessandro Giuliani
    posted to domains for maximum protein size by Pao-Yang on 2007-11-29 10:34:00 as ** along with 2 people choonpeng cdeane
  • Evolution favors protein mutational robustness in sufficiently large populations
    BMC Biology, Vol. 5, No. 1. (2007)
    by Jesse Bloom, Zhongyi Lu, David Chen, Alpan Raval, Ophelia Venturelli, Frances Arnold
    posted to no-tag by Pao-Yang on 2007-11-29 10:33:19 as ** along with 1 person cdeane
  • Exploring Biological Network Structure Using Exponential Random Graph Models.
    Bioinformatics (20 July 2007)
    by Zachary M M Saul, Vladimir Filkov
    posted to exponential graph network radom structure by Pao-Yang on 2007-11-26 14:39:55 as *** along with 3 people and 2 groups tmmurali grahamc iris_2001 ParkinsonLab_at_MaRS OPIG
  • Protein-Protein Interaction Hotspots Carved into Sequences.
    PLoS Comput Biol, Vol. 3, No. 7. (13 July 2007)
    by Yanay Ofran, Burkhard Rost
    posted to hotspots interaction protein sequence by Pao-Yang on 2007-11-26 14:37:06 as *** along with 7 people and 3 groups higueruelo bicko dchughes grahamc cjeans zwang Jporci G4ID ParkinsonLab_at_MaRS Genetics-of-Gambling
  • Identification of functional modules from conserved ancestral protein protein interactions.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by J Dutkowski, J Tiuryn
    posted to conserved functional interactions modules protein by Pao-Yang on 2007-11-26 14:35:00 as ** along with 1 person and 1 group grahamc ParkinsonLab_at_MaRS
  • Influence of degree correlations on network structure and stability in protein-protein interaction networks
    BMC Bioinformatics, Vol. 8 (09 August 2007), 297.
    by Caroline C Friedel, Ralf Zimmer
    posted to degreenetwork interaction networks structureprotein by Pao-Yang on 2007-11-26 14:33:00 as ** along with 1 person and 1 group grahamc ParkinsonLab_at_MaRS
  • The protein network of bacterial motility
    Mol Syst Biol, Vol. 3 (31 July 2007)
    by Seesandra V Rajagopala, Bjorn Titz, Johannes Goll, Jodi R Parrish, Katrin Wohlbold, Matthew T Mckevitt, Timothy Palzkill, Hirotada Mori, Russell L Finley, Peter Uetz
    posted to bacterial interaction motility network protein by Pao-Yang on 2007-11-26 14:29:36 as *** along with 5 people and 4 groups carlk aswin grahamc jmrivort zwang G-quadruplex Supramolecular ParkinsonLab_at_MaRS OPIG
  • Tools for Visually Exploring Biological Networks.
    Bioinformatics (25 August 2007)
    by Matthew Suderman, Michael Hallett
    posted to assessment biological networks visulization by Pao-Yang on 2007-11-26 14:27:57 as ** along with 12 people and 3 groups hryk AlexanderPico schuylrp jyuh icases dullhunk sebastien_vigneau grahamc sgoetz cabbagezs cerami loopback007 ParkinsonLab_at_MaRS TNT Cancer_Stem_Cells
  • Modular co-evolution of metabolic networks
    BMC Bioinformatics, Vol. 8 (27 August 2007), 311.
    by Jing Zhao, Guo-Hui Ding, Lin Tao, Hong Yu, Zhong-Hao Yu, Jian-Hua Luo, Zhi-Wei Cao, Yi-Xue Li
    posted to evolution metabolic modular networks by Pao-Yang on 2007-11-26 14:25:42 as ** along with 1 person and 1 group grahamc ParkinsonLab_at_MaRS
  • A systems biology approach for pathway level analysis
    Genome Res. (4 September 2007), gr.6202607.
    by Sorin Draghici, Purvesh Khatri, Adi L Tarca, Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero
    posted to biology pathway systems by Pao-Yang on 2007-11-26 14:23:21 as **** along with 15 people and 3 groups AlexanderPico heliopais tmmurali dragonrez jfr gurkanbebek grahamc shigepong zwang cabbagezs cerami xingxu shikin idonaldson thomaskelder Bioinformatics ParkinsonLab_at_MaRS OPIG
  • Is proteomics the new genomics?
    Cell, Vol. 130, No. 3. (10 August 2007), pp. 395-398.
    by J Cox, M Mann
    posted to proteomics by Pao-Yang on 2007-11-26 14:20:46 as ** along with 3 people and 1 group grahamc fishtank oelemento ParkinsonLab_at_MaRS
  • Graph Sharpening plus Graph Integration: A Synergy that Improves Protein Functional Classification.
    Bioinformatics (31 October 2007)
    by Hyunjung Shin, Andreas Martin M Lisewski, Olivier Lichtarge
    posted to no-tag by Pao-Yang on 2007-11-25 20:45:30 as ** along with 2 people tmmurali bootsy
  • The Importance of Bottlenecks in Protein Networks: Correlation with Gene Essentiality and Expression Dynamics
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 February 2007), e59.eor.
    by Haiyuan Yu, Philip M Kim, Emmett Sprecher, Valery Trifinov, Mark Gerstein
    posted to bottlenecks interaction networksbetweenness protein by Pao-Yang on 2007-11-25 14:34:26 as read along with 3 people grahamc zwang taiei688
  • Model-based clustering for social networks
    Journal of the Royal Statistical Society: Series A (Statistics in Society), Vol. 170, No. 2. (March 2007), pp. 301-354.
    by Handcock, S Mark, Raftery, E Adrian, Tantrum, M Jeremy
    posted to clustering model model-based network by Pao-Yang on 2007-11-25 14:27:59 as **** along with 1 person and 2 groups ctacmo Statistics_and_Social_Science Biostatistics
  • Cluster analysis of networks generated through homology: automatic identification of important protein communities involved in cancer metastasis.
    BMC Bioinformatics, Vol. 7 (2006)
    by PF Jonsson, T Cavanna, D Zicha, PA Bates
    posted to interaction prediction sequence-basedhomology by Pao-Yang on 2007-11-25 14:25:53 as read along with 1 person jfr
  • Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps.
    Bioinformatics, Vol. 21 Suppl 1 (1 June 2005)
    by E Nabieva, K Jim, A Agarwal, B Chazelle, M Singh
    posted to function functionalflow interactions prediction protein by Pao-Yang on 2007-11-25 14:23:32 as read along with 7 people and 2 groups carlk tmmurali okarsligil lfriedl wnpx j3xucite jiny kdl Bioinformatics
  • Subnets of scale-free networks are not scale-free: sampling properties of networks.
    Proc Natl Acad Sci U S A, Vol. 102, No. 12. (22 March 2005), pp. 4221-4224.
    by MP Stumpf, C Wiuf, RM May
    posted to network sampling scale-free subnet by Pao-Yang on 2007-11-25 14:21:01 as read along with 6 people kentsis bpb griota lshaw somasanyal iris_2001
  • InterPreTS: protein interaction prediction through tertiary structure.
    Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 161-162.
    by P Aloy, RB Russell
    posted to binding interactions protein structure by Pao-Yang on 2007-11-25 14:18:05 as ** along with 5 people baaden bicko chad_davis henschel ruvido
  • Comparative assessment of large-scale data sets of protein-protein interactions.
    Nature, Vol. 417, No. 6887. (23 May 2002), pp. 399-403.
    by C von Mering, R Krause, B Snel, M Cornell, SG Oliver, S Fields, P Bork
    posted to false interactions positives protein by Pao-Yang on 2007-11-25 14:14:57 as read along with 19 people and 6 groups carlk camster barry dragonrez bicko lfriedl chad_davis alexg j3xucite bundschu yeastyboy ruvido raiyar grahamc iris_2001 cmor shu Evangelia shikin dbk-lab structural_bioinformatics kdl Bioinformatics generif_paper GeneGo
  • A structural perspective on protein-protein interactions.
    Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 313-324.
    by RB Russell, F Alber, P Aloy, FP Davis, D Korkin, M Pichaud, M Topf, A Sali
    posted to interactions protein structure by Pao-Yang on 2007-11-25 14:13:24 as read along with 11 people and 1 group higueruelo baaden bicko anita chad_davis dgront sriram_s ruvido cjeans Evangelia marti structure-bii
  • How complete are current yeast and human protein-interaction networks?
    Genome Biology, Vol. 7 (01 December 2006), 120.
    by Traver G Hart, Arun K Ramani, Edward M Marcotte
    posted to false interactions positives protein size by Pao-Yang on 2007-11-25 14:11:17 as read along with 3 people and 1 group carlk eukfn shikin GeneGo
  • Relating three-dimensional structures to protein networks provides evolutionary insights.
    Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941.
    by PM Kim, LJ Lu, Y Xia, MB Gerstein
    posted to binding evolution hub interactions proteins by Pao-Yang on 2007-11-24 17:22:12 as read along with 17 people and 2 groups carlk saket paolomarcatili bicko lfriedl chad_davis Einat tny choonpeng timflutre grahamc ramensky massivemayhem efge lpfernandes cdeane phoenixzxl structural_bioinformatics kdl
  • Cotranslational protein folding--fact or fiction?
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by CM Deane, M Dong, FP Huard, BK Lance, GR Wood
    posted to cotranslational folding protein by Pao-Yang on 2007-11-22 12:14:28 as *** along with 2 people cdeane saunders
  • Inferring domain-domain interactions from protein-protein interactions.
    Genome Res, Vol. 12, No. 10. (October 2002), pp. 1540-1548.
    by M Deng, S Mehta, F Sun, T Chen
    posted to domain interactions mrf by Pao-Yang on 2007-11-22 12:08:56 as read along with 6 people carlk maryee opheliav wnpx neils phoenixzxl
  • Mapping Gene Ontology to proteins based on protein-protein interaction data.
    Bioinformatics, Vol. 20, No. 6. (12 April 2004), pp. 895-902.
    by M Deng, Z Tu, F Sun, T Chen
    posted to function go mrf prediction by Pao-Yang on 2007-11-22 12:06:23 as read
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