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JeffR100s library [157 articles]

Senaste artiklarna i JeffR100s bibliotek.
  • An insulator element and condensed chromatin region separate the chicken beta-globin locus from an independently regulated erythroid-specific folate receptor gene.
    EMBO J, Vol. 18, No. 14. (15 July 1999), pp. 4035-4048.
    by MN Prioleau, P Nony, M Simpson, G Felsenfeld
    posted to no-tag by JeffR100 on 2007-01-02 14:18:41 as read
  • Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles
    Genome Res., Vol. 15, No. 5. (1 May 2005), pp. 674-680.
    by Yoav Gilad, Scott A Rifkin, Paul Bertone, Mark Gerstein, Kevin P White
    posted to no-tag by JeffR100 on 2006-12-29 01:46:42 as ** along with 1 person jphekman
  • Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication
    Nature, Vol. 437, No. 7055., pp. 94-100.
    by Elena V Linardopoulou, Eleanor M Williams, Yuxin Fan, Cynthia Friedman, Janet M Young, Barbara J Trask
    posted to no-tag by JeffR100 on 2006-12-29 01:42:21 as read along with 2 people and 1 group nickluscombe djkt EBI-regulation
  • A genome-wide comparison of recent chimpanzee and human segmental duplications
    Nature, Vol. 437, No. 7055., pp. 88-93.
    by Ze Cheng, Mario Ventura, Xinwei She, Philipp Khaitovich, Tina Graves, Kazutoyo Osoegawa, Deanna Church, Pieter Dejong, Richard K Wilson, Svante Pääbo, Mariano Rocchi, Evan E Eichler
    posted to no-tag by JeffR100 on 2006-12-29 01:41:44 as ** along with 3 people and 1 group great_apes treangen mcox biodiversity_conservation
  • Initial sequence of the chimpanzee genome and comparison with the human genome
    Nature, Vol. 437, No. 7055., pp. 69-87.
    by The
    posted to no-tag by JeffR100 on 2006-12-29 01:39:57 as ** along with 10 people and 3 groups cannin chrn aprasad great_apes indigoviolet dullhunk djkt Garamonfok iris42 rvosa biodiversity_conservation EisenLab FAB-lab
  • Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees.
    Science, Vol. 309, No. 5742. (16 September 2005), pp. 1850-1854.
    by P Khaitovich, I Hellmann, W Enard, K Nowick, M Leinweber, H Franz, G Weiss, M Lachmann, S Pääbo
    posted to no-tag by JeffR100 on 2006-12-29 01:38:39 as ** along with 8 people and 2 groups xwbcn balicea madhadron nickluscombe hdopazo djkt mikaelhuss usagi-kirin EBI-regulation BioinfoCIPF
  • Expression profiling in primates reveals a rapid evolution of human transcription factors
    Nature, Vol. 440, No. 7081. (March 2006), pp. 242-245.
    by Yoav Gilad, Alicia Oshlack, Gordon K Smyth, Terence P Speed, Kevin P White
    posted to no-tag by JeffR100 on 2006-12-29 01:35:43 as ** along with 15 people and 4 groups stevanspringer ccots eckart_bindewald dchughes tabu nirfriedman nickluscombe ranb johncumbers djkt nicg mikaelhuss candypmcg emarker emptyhb FAB-lab G4ID EBI-regulation Genetics-of-Gambling
  • The suppressor of Hairy-wing binding region is required for gypsy mutagenesis
    Molecular and General Genetics MGG, Vol. V233, No. 1. (1 May 1992), pp. 65-70.
    by Patricia A Smith, Victor G Corces
    posted to no-tag by JeffR100 on 2006-12-27 17:03:21 as **
  • An insulator blocks spreading of histone acetylation and interferes with RNA polymerase II transfer between an enhancer and gene
    Nucl. Acids Res., Vol. 32, No. 16. (15 September 2004), pp. 4903-4919.
    by Hui Zhao, Ann Dean
    posted to no-tag by JeffR100 on 2006-12-27 14:58:54 as **
  • CTCF Mediates Interchromosomal Colocalization Between Igf2/H19 and Wsb1/Nf1
    Science, Vol. 312, No. 5771. (14 April 2006), pp. 269-272.
    by Jian Q Ling, Tao Li, Ji F Hu, Thanh H Vu, Hui L Chen, Xin W Qiu, Athena M Cherry, Andrew R Hoffman
    posted to no-tag by JeffR100 on 2006-12-27 14:56:33 as ** along with 1 person and 1 group nickluscombe EBI-regulation
  • Interchromosomal associations between alternatively expressed loci
    Nature (08 May 2005)
    by Charalampos G Spilianakis, Maria D Lalioti, Terrence Town, Gap R Lee, Richard A Flavell
    posted to no-tag by JeffR100 on 2006-12-27 14:54:10 as ** along with 2 people lingchong maximilianh
  • Numbers and organization of RNA polymerases, nascent transcripts, and transcription units in HeLa nuclei.
    Mol Biol Cell, Vol. 9, No. 6. (June 1998), pp. 1523-1536.
    by DA Jackson, FJ Iborra, EM Manders, PR Cook
    posted to no-tag by JeffR100 on 2006-12-27 14:52:37 as **
  • Active genes dynamically colocalize to shared sites of ongoing transcription
    Nat Genet, Vol. 36, No. 10. (October 2004), pp. 1065-1071.
    by Cameron S Osborne, Lyubomira Chakalova, Karen E Brown, David Carter, Alice Horton, Emmanuel Debrand, Beatriz Goyenechea, Jennifer A Mitchell, Susana Lopes, Wolf Reik, Peter Fraser
    posted to no-tag by JeffR100 on 2006-12-27 14:51:18 as **
  • Multiple interactions between regulatory regions are required to stabilize an active chromatin hub.
    Genes Dev, Vol. 18, No. 12. (15 June 2004), pp. 1495-1509.
    by GP Patrinos, M de Krom, E de Boer, A Langeveld, AM Imam, J Strouboulis, W de Laat, FG Grosveld
    posted to no-tag by JeffR100 on 2006-12-27 14:50:18 as ** along with 1 person forluvoft
  • DNA supercoiling allows enhancer action over a large distance
    PNAS, Vol. 98, No. 26. (18 December 2001), pp. 14883-14888.
    by Ye Liu, Vladimir Bondarenko, Alexander Ninfa, Vasily M Studitsky
    posted to no-tag by JeffR100 on 2006-12-27 14:38:19 as ** along with 1 person and 1 group wrowell Cline_lab
  • Transcription of the human [beta]-globin gene is stimulated by an SV40 enhancer to which it is physically linked but topologically uncoupled
    Cell, Vol. 45, No. 4. (23 May 1986), pp. 575-580.
    by Sharon E Plon, James C Wang
    posted to no-tag by JeffR100 on 2006-12-27 14:23:14 as **
  • Conserved CTCF Insulator Elements Flank the Mouse and Human beta-Globin Loci
    Mol. Cell. Biol., Vol. 22, No. 11. (1 June 2002), pp. 3820-3831.
    by Catherine M Farrell, Adam G West, Gary Felsenfeld
    posted to no-tag by JeffR100 on 2006-12-27 14:21:07 as **
  • Putting Boundaries on Silence
    Cell, Vol. 99, No. 5. (24 November 1999), pp. 459-462.
    by Fang-Lin Sun, Sarah C Elgin
    posted to no-tag by JeffR100 on 2006-12-27 14:19:58 as **
  • A position-effect assay for boundaries of higher order chromosomal domains
    Cell, Vol. 64, No. 5. (8 March 1991), pp. 941-950.
    by Rebecca Kellum, Paul Schedl
    posted to no-tag by JeffR100 on 2006-12-27 14:16:06 as **
  • Clustering of housekeeping genes provides a unified model of gene order in the human genome.
    Nat Genet, Vol. 31, No. 2. (June 2002), pp. 180-183.
    by MJ Lercher, AO Urrutia, LD Hurst
    posted to no-tag by JeffR100 on 2006-12-20 15:44:37 as ** along with 5 people and 1 group oamg gpalidwor nagendraproj jpoyatos gjuggler Glimcher_Lab
  • Synexpression groups in eukaryotes
    Nature, Vol. 402, No. 6761. (2 December 1999), pp. 483-487.
    by Christof Niehrs, Nicolas Pollet
    posted to no-tag by JeffR100 on 2006-12-20 14:39:48 as **
  • A Roadmap of Tandemly Arrayed Genes in the Genomes of Human, Mouse, and Rat
    Molecular Biology and Evolution, Vol. 23, No. 11. (November 2006), pp. 2134-2141.
    by Shoja, Valia, Zhang, Liqing
    posted to no-tag by JeffR100 on 2006-12-20 14:19:32 as ** along with 1 person dandaman
  • Coexpression of Neighboring Genes in the Genome of Arabidopsis thaliana
    Genome Res., Vol. 14, No. 6. (1 June 2004), pp. 1060-1067.
    by Elizabeth J Williams, Dianna J Bowles
    posted to no-tag by JeffR100 on 2006-12-20 14:11:51 as ** along with 2 people kengg olympos
  • Genomic Gene Clustering Analysis of Pathways in Eukaryotes
    Genome Res., Vol. 13, No. 5. (1 May 2003), pp. 875-882.
    by Jennifer M Lee, Erik L Sonnhammer
    posted to no-tag by JeffR100 on 2006-12-20 14:04:56 as *** along with 5 people and 1 group tharris jpoyatos maximilianh alhufton Garamonfok C. elegans / WormBase
  • The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes.
    Genome Res, Vol. 13, No. 9. (September 2003), pp. 1998-2004.
    by R Versteeg, BD van Schaik, MF van Batenburg, M Roos, R Monajemi, H Caron, HJ Bussemaker, AH van Kampen
    posted to no-tag by JeffR100 on 2006-12-20 01:59:38 as ***** along with 3 people jpoyatos oelemento inesdesantiago
  • Evidence for large domains of similarly expressed genes in the Drosophila genome
    Journal of Biology, Vol. 1 (2002)
    by Paul Spellman, Gerald Rubin
    posted to bibtex-import by JeffR100 on 2006-12-15 17:10:09 as **
  • Evolutionary constraints in conserved nongenic sequences of mammals
    Genome Research, Vol. 15 (Oct 2005), pp. 1373-1378.
    by Peter D Keightley, Gregory V Kryukov, Shamil Sunyaev, Daniel L Halligan, Daniel J Gaffney
    posted to bibtex-import by JeffR100 on 2006-12-15 17:10:08 as **
  • Evolution and functional classification of vertebrate gene deserts
    Genome Research (Dec 2004)
    by Ivan Ovcharenko, Gabriela G Loots, Marcelo A Nobrega, Ross C Hardison, Webb Miller, Lisa Stubbs
    posted to bibtex-import by JeffR100 on 2006-12-15 17:10:08 as **
  • A functional survey of the enhancer activity of conserved non-coding sequences from vertebrate Iroquois cluster gene deserts
    Genome Research, Vol. 15 (Aug 2005), pp. 1061-1072.
    by Elisa, Carmen G Feijoo, Miguel Manzanares, Juan J Tena, Elisa R Seguel, Annalisa Letizia, Miguel L Allende, Jose
    posted to bibtex-import by JeffR100 on 2006-12-15 17:10:08 as **
  • Gene regulation and large-scale chromatin organization in the nucleus
    Chromosome Research, Vol. V14 (Feb 2006), pp. 117-126.
    by Niall Dillon
    posted to bibtex-import by JeffR100 on 2006-12-15 17:08:38 as **
  • Gene Expression Evolves Faster in Narrowly Than in Broadly Expressed Mammalian Genes
    Molecular Biology and Evolution, Vol. 22 (Oct 2005), pp. 2113-2118.
    by Jing Yang, Andrew I Su, Wen H Li
    posted to bibtex-import by JeffR100 on 2006-12-15 17:08:38 as **
  • Folding and organization of a contiguous chromosome region according to the gene distribution pattern in primary genomic sequence
    The Journal of Cell Biology, Vol. 174 (Jul 2006), pp. 27-38.
    by Lindsay S Shopland, Christopher R Lynch, Kevin A Peterson, Kathleen Thornton, Nick Kepper, Johann von Hase, Stefan Stein, Sarah Vincent, Kelly R Molloy, Gregor Kreth, Christoph Cremer, Carol J Bult, Timothy P O'Brien
    posted to bibtex-import by JeffR100 on 2006-12-15 17:08:38 as **
  • Exploring the Metabolic and Genetic Control of Gene Expression on a Genomic Scale
    Science, Vol. 278 (Oct 1997), pp. 680-686.
    by Joseph L Derisi, Vishwanath R Iyer, Patrick O Brown
    posted to bibtex-import by JeffR100 on 2006-12-15 17:08:38 as **
  • Evolutionary Origin and Maintenance of Coexpressed Gene Clusters in Mammals
    Mol Biol Evol, Vol. 23, No. 9. (1 September 2006), pp. 1715-1723.
    by Marie Semon, Laurent Duret
    posted to no-tag by JeffR100 on 2006-12-15 17:07:56 as ** along with 3 people and 2 groups dchughes Garamonfok inesdesantiago G4ID Genetics-of-Gambling
  • Insulators: many functions, many mechanisms
    Genes Dev., Vol. 16, No. 3. (1 February 2002), pp. 271-288.
    by Adam G West, Miklos Gaszner, Gary Felsenfeld
    posted to no-tag by JeffR100 on 2006-12-15 17:02:01 as ** along with 4 people and 1 group sebastien_vigneau olympos wrowell eviledv Cline_lab
  • Identifying gene regulatory elements by genomic microarray mapping of DNaseI hypersensitive sites
    Genome Research, Vol. 16 (Oct 2006), pp. 1310-1319.
    by George A Follows, Pawan Dhami, Berthold Gottgens, Alexander W Bruce, Peter J Campbell, Shane C Dillon, Aileen M Smith, Christoph Koch, Ian J Donaldson, Mike A Scott, Ian Dunham, Mary E Janes, David Vetrie, Anthony R Green
    posted to bibtex-import by JeffR100 on 2006-12-15 17:02:00 as **
  • Insulators of higher eukaryotes: Properties, mechanisms of action, and role in transcriptional regulation
    Russian Journal of Genetics, Vol. V42 (Aug 2006), pp. 845-857.
    by OG Maksimenko, DA Chetverina, PG Georgiev
    posted to bibtex-import by JeffR100 on 2006-12-15 17:02:00 as **
  • Identification of functional transcription factor binding sites using closely related Saccharomyces species
    Genome Research, Vol. 15 (May 2005), pp. 701-709.
    by Scott W Doniger, Juyoung Huh, Justin C Fay
    posted to bibtex-import by JeffR100 on 2006-12-15 17:02:00 as **
  • Comparative genomics of Drosophila and human core promoters
    Genome Biology, Vol. 7 (2006)
    by Peter Fitzgerald, David Sturgill, Andrey Shyakhtenko, Brian Oliver, Charles Vinson
    posted to bibtex-import by JeffR100 on 2006-12-15 17:02:00 as **
  • GOstat: find statistically overrepresented Gene Ontologies within a group of genes
    Bioinformatics, Vol. 20 (Jun 2004), pp. 1464-1465.
    by Tim Beissbarth, Terence P Speed
    posted to bibtex-import by JeffR100 on 2006-12-15 17:00:07 as **
  • Going the Distance: A Current View of Enhancer Action
    Science, Vol. 281 (Jul 1998), pp. 60-63.
    by Elizabeth M Blackwood, James T Kadonaga
    posted to bibtex-import by JeffR100 on 2006-12-15 17:00:07 as **
  • Genomic organization of gypsy-like chromatin insulators in Drosophila melanogaster
    Genetics (Feb 2006)
    by Edward Ramos, Dolanchanpa Ghosh, Ellen Baxter, Victor Corces
    posted to bibtex-import by JeffR100 on 2006-12-15 17:00:07 as **
  • Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)
    Genome Research, Vol. 16 (Jan 2006), pp. 123-131.
    by Gregory E Crawford, Ingeborg E Holt, James Whittle, Bryn D Webb, Denise Tai, Sean Davis, Elliott H Margulies, Yidong Chen, John A Bernat, David Ginsburg, Daixing Zhou, Shujun Luo, Thomas J Vasicek, Mark J Daly, Tyra G Wolfsberg, Francis S Collins
    posted to bibtex-import by JeffR100 on 2006-12-15 17:00:07 as **
  • A gene atlas of the mouse and human protein-encoding transcriptomes
    Proceedings of the National Academy of Sciences, Vol. 101 (Apr 2004), pp. 6062-6067.
    by Andrew I Su, Tim Wiltshire, Serge Batalov, Hilmar Lapp, Keith A Ching, David Block, Jie Zhang, Richard Soden, Mimi Hayakawa, Gabriel Kreiman, Michael P Cooke, John R Walker, John B Hogenesch
    posted to bibtex-import by JeffR100 on 2006-12-15 17:00:07 as **
  • Active Chromatin Hub of the Mouse {alpha}-Globin Locus Forms in a Transcription Factory of Clustered Housekeeping Genes
    Molecular and Cellular Biology, Vol. 26 (Jul 2006), pp. 5096-5105.
    by Guo L Zhou, Li Xin, Wei Song, Li J Di, Guang Liu, Xue S Wu, De P Liu, Chih C Liang
    posted to bibtex-import by JeffR100 on 2006-12-15 16:57:11 as **
  • ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements
    Genome Research (Oct 2006)
    by James Taylor, Svitlana Tyekucheva, David C King, Ross C Hardison, Webb Miller, Francesca Chiaromonte
    posted to bibtex-import by JeffR100 on 2006-12-15 16:57:11 as **
  • Enhancer-promoter specificity mediated by DPE or TATA core promoter motifs
    Genes and Development, Vol. 15 (Oct 2001), pp. 2515-2519.
    by Jennifer EF Butler, James T Kadonaga
    posted to bibtex-import by JeffR100 on 2006-12-15 16:57:10 as **
  • Enhancer Blocking by Chicken beta-Globin 5'-HS4: ROLE OF ENHANCER STRENGTH AND INSULATOR NUCLEOSOME DEPLETION
    Journal of Biological Chemistry, Vol. 281 (Oct 2006), pp. 30573-30580.
    by Hui Zhao, Aeri Kim, Sang H Song, Ann Dean
    posted to bibtex-import by JeffR100 on 2006-12-15 16:57:10 as **
  • Distant conserved sequences flanking endothelial-specific promoters contain tissue-specific DNase-hypersensitive sites and over-represented motifs
    Human Molecular Genetics, Vol. 15 (Jul 2006), pp. 2098-2105.
    by John A Bernat, Gregory E Crawford, Aleksey Y Ogurtsov, Francis S Collins, David Ginsburg, Alexey S Kondrashov
    posted to bibtex-import by JeffR100 on 2006-12-15 16:57:10 as **
  • Disruption of a long-range cis-acting regulator for Shh causes preaxial polydactyly
    Proceedings of the National Academy of Sciences, Vol. 99 (May 2002), pp. 7548-7553.
    by Laura A Lettice, Taizo Horikoshi, Simon JH Heaney, Marijke J van Baren, Herma C van der Linde, Guido J Breedveld, Marijke Joosse, Nurten Akarsu, Ben A Oostra, Naoto Endo, Minoru Shibata, Mikio Suzuki, Eiichi Takahashi, Toshikatsu Shinka, Yutaka Nakahori, Dai Ayusawa, Kazuhiko Nakabayashi, Stephen W Scherer, Peter Heutink, Robert E Hill, Sumihare Noji
    posted to bibtex-import by JeffR100 on 2006-12-15 16:57:10 as **
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