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Emas library [291 articles]

Senaste artiklarna i Emas bibliotek ordnat efter prioritet.
  • The intrinsic conformational propensities of the 20 naturally occurring amino acids and reflection of these propensities in proteins — PNAS
    posted to no-tag by Ema on 2008-08-21 19:27:31 as **
  • A Dynamic Stochastic Model for DNA Replication Initiation in Early Embryos
    PLoS ONE, Vol. 3, No. 8. (2008), e2919.
    by Arach Goldar, Hélène Labit, Kathrin Marheineke, Olivier Hyrien
    posted to no-tag by Ema on 2008-08-21 19:26:26 as **
  • Bioinformatics and cancer target discovery.
    Drug discovery today, Vol. 9, No. 18. (15 September 2004), pp. 795-802.
    by B Desany, Z Zhang
    posted to no-tag by Ema on 2008-08-21 03:14:04 as **
  • Genetic Variation in an Individual Human Exome
    PLoS Genet, Vol. 4, No. 8. (2008), e1000160.
    by Pauline C Ng, Samuel Levy, Jiaqi Huang, Timothy B Stockwell, Brian P Walenz, Kelvin Li, Nelson Axelrod, Dana A Busam, Robert L Strausberg, Craig J Venter
    posted to no-tag by Ema on 2008-08-16 18:58:43 as ** along with 5 people jyuh reyez caseybrown bpcusack djkt
  • Regulatory Control and the Costs and Benefits of Biochemical Noise
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000125.
    by Sorin Tănase-Nicola, Ten
    posted to no-tag by Ema on 2008-08-16 18:58:28 as ** along with 2 people jjray klo
  • Geometric Interpretation of Gene Coexpression Network Analysis
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000117.
    by Steve Horvath, Jun Dong
    posted to no-tag by Ema on 2008-08-16 18:58:11 as ** along with 6 people roys Borelli kengg davidchavalarias AbnerCYH Totobox
  • Lakeside Cemeteries in the Sahara: 5000 Years of Holocene Population and Environmental Change
    PLoS ONE, Vol. 3, No. 8. (2008), e2995.
    by Paul C Sereno, Elena A Garcea, Hélène Jousse, Christopher M Stojanowski, Jean-François Saliège, Abdoulaye Maga, Oumarou A Ide, Kelly J Knudson, Anna M Mercuri, Thomas W Stafford, Thomas G Kaye, Carlo Giraudi, Isabella M N'siala, Enzo Cocca, Hannah M Moots, Didier B Dutheil, Jeffrey P Stivers
    posted to no-tag by Ema on 2008-08-15 13:29:57 as **
  • Segment-based multiple sequence alignment
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i187-192.
    by Tobias Rausch, Anne-Katrin Emde, David Weese, Andreas Doring, Cedric Notredame, Knut Reinert
    posted to no-tag by Ema on 2008-08-12 13:15:44 as ** along with 6 people groepl chad_davis aprasad zwang APRegier djkt
  • Optimal spliced alignments of short sequence reads
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i174-180.
    by Fabio De Bona, Stephan Ossowski, Korbinian Schneeberger, Gunnar Ratsch
    posted to no-tag by Ema on 2008-08-12 13:15:31 as ** along with 1 person Neeperando
  • PAML 4: Phylogenetic Analysis by Maximum Likelihood
    Mol Biol Evol (4 May 2007), msm088.
    by Ziheng Yang
    posted to no-tag by Ema on 2008-08-12 08:26:48 as ** along with 8 people and 1 group CharlesM RamuAnandakrishnan operon akifumi hdopazo BioNica stajich ryanraaum Berkeley Mycology
  • Toward Automatic Reconstruction of a Highly Resolved Tree of Life
    Science, Vol. 311, No. 5765. (3 March 2006), pp. 1283-1287.
    by Francesca D Ciccarelli, Tobias Doerks, Christian von Mering, Christopher J Creevey, Berend Snel, Peer Bork
    posted to no-tag by Ema on 2008-08-12 08:07:45 as ** along with 13 people and 5 groups diamantis Retchless knaseanka dpollard tny dchughes nirfriedman cmm azazello wenhan maximilianh cmzmasek lonshy EisenLab FAB-lab G4ID Genetics-of-Gambling MBLAB
  • The incoherent feed-forward loop can generate non-monotonic input functions for genes
    Mol Syst Biol, Vol. 4 (15 July 2008)
    by Shai Kaplan, Anat Bren, Erez Dekel, Uri Alon
    posted to no-tag by Ema on 2008-08-06 18:02:20 as ** along with 1 person austin
  • Constraints imposed by non-functional protein-protein interactions on gene expression and proteome size
    Mol Syst Biol, Vol. 4 (2008)
    by Jingshan Zhang, Sergei Maslov, Eugene I Shakhnovich
    posted to no-tag by Ema on 2008-08-06 18:02:07 as ** along with 2 people biehl zwang
  • High-order combination effects and biological robustness
    Mol Syst Biol, Vol. 4 (2008)
    by Joseph Lehar, Andrew Krueger, Grant Zimmermann, Alexis Borisy
    posted to no-tag by Ema on 2008-08-06 18:01:48 as ** along with 2 people jjray bootsy
  • A general method applicable to the search for similarities in the amino acid sequence of two proteins.
    J Mol Biol, Vol. 48, No. 3. (March 1970), pp. 443-453.
    by SB Needleman, CD Wunsch
    posted to bioinf by Ema on 2008-08-04 15:08:25 as ** along with 6 people newton1234 yylin jwm dgront rabio incovoma
  • A simple method for displaying the hydropathic character of a protein.
    J Mol Biol, Vol. 157, No. 1. (5 May 1982), pp. 105-132.
    by J Kyte, RF Doolittle
    posted to protein by Ema on 2008-08-04 14:59:36 as ** along with 7 people bicko thaliana chad_davis dgront medic0747 netterpaladin ashaytan
  • Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins.
    Nat Biotechnol, Vol. 22, No. 10. (October 2004), pp. 1302-1306.
    by AM Fernandez-Escamilla, F Rousseau, J Schymkowitz, L Serrano
    posted to tangotob by Ema on 2008-08-04 14:57:20 as **
  • MUSCLE: a multiple sequence alignment method with reduced time and space complexity.
    BMC Bioinformatics, Vol. 5, No. 1. (19 August 2004)
    by RC Edgar
    posted to no-tag by Ema on 2008-08-04 13:51:21 as ** along with 13 people and 3 groups sanchezbuelna wallacei knaseanka chrn jwm balajis gbart caporaso sriram_s cdallett timflutre gisle urgi Radiation_Damage Stressosome biomedical-nlp
  • Investigating selection on viruses: a statistical alignment approach
    BMC Bioinformatics, Vol. 9 (10 July 2008), 304.
    by Saskia de Groot, Thomas Mailund, Gerton Lunter, Jotun Hein
    posted to no-tag by Ema on 2008-07-21 22:28:36 as ** along with 1 person nuin
  • The Ascent of the Abundant: How Mutational Networks Constrain Evolution
    PLoS Comput Biol, Vol. 4, No. 7. (18 July 2008), e1000110.
    by Matthew C Cowperthwaite, Evan P Economo, William R Harcombe, Eric L Miller, Lauren A Meyers
    posted to no-tag by Ema on 2008-07-19 11:33:37 as ** along with 6 people shoshin provero biomcgary zwang friendpine djkt
  • Memory Switches in Chemical Reaction Space
    PLoS Comput Biol, Vol. 4, No. 7. (18 July 2008), e1000122.
    by Naren Ramakrishnan, Upinder S Bhalla
    posted to no-tag by Ema on 2008-07-19 11:33:24 as **
  • Dynamics of Genome Rearrangement in Bacterial Populations
    PLoS Genet, Vol. 4, No. 7. (18 July 2008), e1000128.
    by Aaron E Darling, István Miklós, Mark A Ragan
    posted to no-tag by Ema on 2008-07-19 11:32:49 as ** along with 2 people jjray djkt
  • RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
    Genome Res. (11 June 2008), gr.079558.108.
    by John Marioni, Cristopher Mason, Shrikant Mane, Matthew Stephens, Yoav Gilad
    posted to no-tag by Ema on 2008-07-18 14:20:02 as ** along with 15 people and 1 group kengg Stew GustavoLacerda shurjo jyuh caseybrown vmarshal lusk fpattyn ela503 semrich balicea vega giovanni stajich Berkeley Mycology
  • Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation.
    Nature reviews. Genetics (1 July 2008)
    by Luis López-Maury, Samuel Marguerat, Jürg Bähler
    posted to no-tag by Ema on 2008-07-18 14:19:24 as ** along with 6 people bpcusack cambray klo jmjimenez jjray bootsy
  • A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome
    Science (3 July 2008), 1160342.
    by Marc Sultan, Marcel H Schulz, Hugues Richard, Alon Magen, Andreas Klingenhoff, Matthias Scherf, Martin Seifert, Tatjana Borodina, Aleksey Soldatov, Dmitri Parkhomchuk, Dominic Schmidt, Sean O'Keeffe, Stefan Haas, Martin Vingron, Hans Lehrach, Marie-Laure Yaspo
    posted to no-tag by Ema on 2008-07-18 14:18:29 as ** along with 10 people and 1 group zwang ArtemPankin djkt kjglennie balicea GeeSharpMinor dh0000 caseybrown reyez oelemento Khavkin's lab
  • Genome-wide transcription and the implications for genomic organization.
    Nat Rev Genet (8 May 2007)
    by Philipp Kapranov, Aarron T T Willingham, Thomas R R Gingeras
    posted to no-tag by Ema on 2008-07-18 14:18:03 as ** along with 15 people and 5 groups inesdesantiago GeeSharpMinor maximilianh jyuh balicea xico dchughes kengg sebastien_vigneau zwang ajgentles asddd hanansh antonkratz vietanh0 Bioinformatics WetBiology G4ID Plantandetc Genetics-of-Gambling
  • Energetics of the protein-DNA-water interaction
    BMC Structural Biology, Vol. 7 (10 January 2007), 4.
    by Francesca Spyrakis, Pietro Cozzini, Chiara Bertoli, Anna Marabotti, Glen E Kellogg, Andrea Mozzarelli
    posted to no-tag by Ema on 2008-07-14 18:05:54 as ** along with 3 people jjray aalibes medic0747
  • The Generation of Promoter-Mediated Transcriptional Noise in Bacteria
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000109.
    by Namiko Mitarai, Ian B Dodd, Michael T Crooks, Kim Sneppen
    posted to no-tag by Ema on 2008-07-12 00:05:33 as ** along with 2 people jjray waszak
  • Evolution of Evolvability in Gene Regulatory Networks
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000112.
    by Anton Crombach, Paulien Hogeweg
    posted to no-tag by Ema on 2008-07-12 00:04:31 as ** along with 10 people and 1 group Borelli rebeccamancy shoshin jdiezperezj erel10 djkt dquest Stew dlobo bootsy GEB
  • Probing the Extent of Randomness in Protein Interaction Networks
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000114.
    by Joseph Ivanic, Anders Wallqvist, Jaques Reifman
    posted to no-tag by Ema on 2008-07-12 00:04:28 as ** along with 1 person kluck
  • Unraveling Protein Networks with Power Graph Analysis
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108.
    by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder
    posted to no-tag by Ema on 2008-07-12 00:04:09 as ** along with 17 people and 2 groups rsantana sebk roys lptolik MatthiasReimann jmuhlich AbnerCYH royerloic tmmurali stajich chad_davis renatomilani askrajiv Borelli nuin reyez kengg OPIG Berkeley Mycology
  • [duplicate] Local Function Conservation in Sequence and Structure Space
    PLoS Comput Biol, Vol. 4, No. 7. (4 July 2008), e1000105.
    by Nils Weinhold, Oliver Sander, Francisco S Domingues, Thomas Lengauer, Ingolf Sommer
    posted to no-tag by Ema on 2008-07-07 23:26:46 as **
  • Local Function Conservation in Sequence and Structure Space
    PLoS Comput Biol, Vol. 4, No. 7. (4 July 2008), e1000105.
    by Nils Weinhold, Oliver Sander, Francisco S Domingues, Thomas Lengauer, Ingolf Sommer
    posted to no-tag by Ema on 2008-07-07 23:13:32 as ** along with 1 person cabbagesofdoom
  • Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan
    PLoS Comput Biol, Vol. 4, No. 7. (4 July 2008), e1000107.
    by Morten Nielsen, Claus Lundegaard, Thomas Blicher, Bjoern Peters, Alessandro Sette, Sune Justesen, Søren Buus, Ole Lund
    posted to no-tag by Ema on 2008-07-07 23:13:03 as **
  • Colored extrinsic fluctuations and stochastic gene expression
    Mol Syst Biol, Vol. 4 (6 May 2008)
    by Vahid Shahrezaei, Julien F Ollivier, Peter S Swain
    posted to no-tag by Ema on 2008-07-02 17:05:44 as ** along with 2 people margaritis jjray
  • Recursive construction of perfect DNA molecules from imperfect oligonucleotides.
    Molecular systems biology, Vol. 4 (2008)
    by G Linshiz, TB Yehezkel, S Kaplan, I Gronau, S Ravid, R Adar, E Shapiro
    posted to no-tag by Ema on 2008-07-02 17:05:29 as ** along with 2 people and 2 groups austin dbikard SynBioSys Centre de Recherches Interdisciplinaires
  • Recurrent design patterns in the feedback regulation of the mammalian signalling network
    Mol Syst Biol, Vol. 4 (6 May 2008)
    by Stefan Legewie, Hanspeter Herzel, Hans V Westerhoff, Nils Bluthgen
    posted to no-tag by Ema on 2008-07-02 17:05:18 as ** along with 3 people reyez bootsy roys
  • Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis
    Mol Syst Biol, Vol. 4 (6 May 2008)
    by Naoyuki Sugiyama, Hirofumi Nakagami, Keiichi Mochida, Arsalan Daudi, Masaru Tomita, Ken Shirasu, Yasushi Ishihama
    posted to no-tag by Ema on 2008-07-02 17:05:03 as ** along with 3 people kengg zwang neils
  • Intronic Alternative Splicing Regulators Identified by Comparative Genomics in Nematodes
    PLoS Comput Biol, Vol. 2, No. 7. (14 July 2006), e86.
    by Jennifer L Kabat, Sergio Barberan-Soler, Paul Mckenna, Hiram Clawson, Tracy Farrer, Alan M Zahler
    posted to no-tag by Ema on 2008-06-30 14:44:19 as **
  • Transcription in Mycoplasma pneumoniae.
    Nucleic acids research, Vol. 28, No. 22. (15 November 2000), pp. 4488-4496.
    by J Weiner, R Herrmann, GF Browning
    posted to no-tag by Ema on 2008-06-30 11:24:12 as ** along with 1 person shana
  • Regulation of Signal Duration and the Statistical Dynamics of Kinase Activation by Scaffold Proteins
    PLoS Comput Biol, Vol. 4, No. 6. (27 June 2008), e1000099.
    by Jason W Locasale, Arup K Chakraborty
    posted to no-tag by Ema on 2008-06-29 12:19:39 as ** along with 1 person Schmidtc
  • Why are
    by Vladimir N Uversky, Joel R Gillespie, Anthony L Fink
    posted to no-tag by Ema on 2008-06-24 18:46:39 as ** along with 2 people taianah Evangelia
  • Protein folding: Chaperone embrace
    Nature Reviews Molecular Cell Biology, Vol. 9, No. 7. (18 June 2008), pp. 497-497.
    by Francesca Cesari
    posted to tob by Ema on 2008-06-24 18:22:44 as **
  • Alternative splicing and genome complexity.
    Nat Genet, Vol. 30, No. 1. (January 2002), pp. 29-30.
    by D Brett, H Pospisil, J Valcárcel, J Reich, P Bork
    posted to no-tag by Ema on 2008-06-24 18:21:52 as ** along with 3 people and 1 group kaspermunch PunkRock antonkratz Bioinformatics
  • Global variation in copy number in the human genome
    Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454.
    by Richard Redon, Shumpei Ishikawa, Karen R Fitch, Lars Feuk, George H Perry, Daniel T Andrews, Heike Fiegler, Michael H Shapero, Andrew R Carson, Wenwei Chen, Eun K Cho, Stephanie Dallaire, Jennifer L Freeman, Juan R Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R Macdonald, Christian R Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P Carter, Hiroyuki Aburatani, Charles Lee, Keith W Jones, Stephen W Scherer, Matthew E Hurles
    posted to no-tag by Ema on 2008-06-24 18:21:34 as ** along with 25 people and 6 groups pradiptaray daed srp33 bpb jfr balajis dpollard mtagaya adepace aswin rdiaz qfwills ealloza vplagnol giovanni jeremymiller frohike vpschulz raiyar ramensky ccr azazello dbgrant colinveal xingxu Bioinformatics EisenLab BioinfoCIPF GeschwindLab steinmetzlab MBLAB
  • Large-Scale Copy Number Polymorphism in the Human Genome
    Science, Vol. 305, No. 5683. (23 July 2004), pp. 525-528.
    by Jonathan Sebat, B Lakshmi, Jennifer Troge, Joan Alexander, Janet Young, Par Lundin, Susanne Maner, Hillary Massa, Megan Walker, Maoyen Chi, Nicholas Navin, Robert Lucito, John Healy, James Hicks, Kenny Ye, Andrew Reiner, Conrad C Gilliam, Barbara Trask, Nick Patterson, Anders Zetterberg, Michael Wigler
    posted to no-tag by Ema on 2008-06-24 18:20:48 as ** along with 7 people and 2 groups mercaptan pcahan1 mrkrause rdiaz jeremymiller massivemayhem jpdemuth Bioinformatics GeschwindLab
  • Detection of large-scale variation in the human genome.
    Nat Genet, Vol. 36, No. 9. (September 2004), pp. 949-951.
    by AJ Iafrate, L Feuk, MN Rivera, ML Listewnik, PK Donahoe, Y Qi, SW Scherer, C Lee
    posted to no-tag by Ema on 2008-06-24 18:18:37 as ** along with 4 people and 2 groups pcahan1 dchughes ealloza bioguru2000 G4ID Genetics-of-Gambling
  • A Coarse-Grained Biophysical Model of E. coli and Its Application to Perturbation of the rRNA Operon Copy Number
    PLoS Comput Biol, Vol. 4, No. 5. (2 May 2008), e1000038.
    by Arbel D Tadmor, Tsvi Tlusty
    posted to no-tag by Ema on 2008-06-23 17:29:54 as **
  • Discovering sequence motifs with arbitrary insertions and deletions.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    by MC Frith, NF Saunders, B Kobe, TL Bailey
    posted to no-tag by Ema on 2008-06-23 17:29:42 as ** along with 6 people Evangelia dquest Stew gjuggler neils cabbagesofdoom
  • The Energy Landscapes of Repeat-Containing Proteins: Topology, Cooperativity, and the Folding Funnels of One-Dimensional Architectures
    PLoS Comput Biol, Vol. 4, No. 5. (16 May 2008), e1000070.
    by Diego U Ferreiro, Aleksandra M Walczak, Elizabeth A Komives, Peter G Wolynes
    posted to no-tag by Ema on 2008-06-23 17:29:24 as **
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