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Taggat som: systems-biology [355 articles]

Senaste hänvisningarna som insorterats under taggen systems-biology.
  • Artificial Intelligence Methods and Tools for Systems Biology
    (16 December 2004)
    by W Dubitzky
    posted to systems-biology by yas on 2006-02-05 15:29:45 as ** along with 1 group T_lab
  • Mining literature for systems biology.
    Brief Bioinform (10 October 2006)
    by Phoebe M M Roberts
    posted to review systems-biology text-mining by yas on 2006-10-20 04:52:34 as ** along with 2 people and 2 groups irenas jacky957 dbk-lab T_lab
  • Human disease classification in the postgenomic era: A complex systems approach to human pathobiology
    Mol Syst Biol, Vol. 3 (10 July 2007)
    by Joseph Loscalzo, Isaac Kohane, Albert-Laszlo Barabasi
    posted to systems-biology by yas on 2007-11-04 09:09:05 as ** along with 6 people and 2 groups Yanno kentsis jfr dchughes zwang nolodie G4ID Genetics-of-Gambling
  • Systems biology. Life's complexity pyramid.
    Science, Vol. 298, No. 5594. (25 October 2002), pp. 763-764.
    by ZN Oltvai, AL Barabási
    posted to systems-biology by yas on 2007-11-04 09:02:35 as ** along with 7 people and 6 groups eldan wnpx sameetmehta jwdietrich mattjb franklin Ema MathBio Cybernetics ComplexAdaptiveSystems DSTO-CAS Biomedical_Cybernetics AQUA-FONTIS-Study
  • Modelling cellular behaviour.
    Nature, Vol. 409, No. 6818. (18 January 2001), pp. 391-395.
    by D Endy, R Brent
    posted to systems-biology by yas on 2007-11-04 07:37:29 as ** along with 1 person Evangelia
  • Towards zoomable multidimensional maps of the cell
    Nature Biotechnology, Vol. 25, No. 5. (04 May 2007), pp. 547-554.
    by Zhenjun Hu, Joe Mellor, Jie Wu, Minoru Kanehisa, Joshua M Stuart, Charles Delisi
    posted to protein-protein-interactions systems-biology visualization by yas on 2007-11-02 03:14:40 as ** along with 10 people carlk Borelli jyuh thomaskelder AlexanderPico tmmurali kuhn cmmorel balajis dullhunk
  • Systems biology and combination therapy in the quest for clinical efficacy.
    Nat Chem Biol, Vol. 2, No. 9. (September 2006), pp. 458-466.
    by JB Fitzgerald, B Schoeberl, UB Nielsen, PK Sorger
    posted to systems-biology combination by xtizon on 2008-06-27 12:28:47 as ** along with 2 people and 2 groups jaycopeland cdppublications SorgerLab CDP
  • Comparing simulation results of SBML capable simulators
    Bioinformatics, Vol. 24, No. 17. (1 September 2008), pp. 1963-1965.
    by Frank T Bergmann, Herbert M Sauro
    posted to systems-biology simulations sbml by sjcockell on 2008-08-26 14:17:36 as ** along with 2 people reyez dullhunk
  • Machine Learning for Systems Biology
    Lecture Notes in Computer Science : Inductive Logic Programming (2005), pp. 416-423.
    by SH Muggleton
    posted to machine-learning systems-biology by simmie on 2006-12-06 14:28:32 as read
  • A mathematical tool for exploring the dynamics of biological networks
    Proceedings of the National Academy of Sciences (21 November 2007), 0709955104.
    by Paolo E Barbano, Marina Spivak, Marc Flajolet, Angus C Nairn, Paul Greengard, Leslie Greengard
    posted to systems-biology by sdbneuro on 2007-12-05 09:05:34 as ** along with 9 people and 1 group tmmurali cjeans zwang cactus sobolevnrm forgoston lenov mdramirez phoenixzxl baker-group
  • Agents in bioinformatics, computational and systems biology.
    Brief Bioinform, Vol. 8, No. 1. (January 2007), pp. 45-59.
    by E Merelli, G Armano, N Cannata, F Corradini, M d'Inverno, A Doms, P Lord, A Martin, L Milanesi, S Möller, M Schroeder, M Luck
    posted to agents biology mas pads systems-biology by roland_ewald on 2007-04-16 08:54:16 as ** along with 3 people and 2 groups alanrw dullhunk carmaus dIEMoSIRIS MoSi-Rostock
  • Simulated diffusion of phosphorylated CheY through the cytoplasm of Escherichia coli.
    J Bacteriol, Vol. 187, No. 1. (January 2005), pp. 45-53.
    by K Lipkow, SS Andrews, D Bray
    posted to signaling-pathways simulation smoldyn spatial-simulation stochastic-simulation systems-biology by roland_ewald on 2007-05-02 13:59:10 as ** along with 6 people and 2 groups gabe_rosser RebeccaHamer csanford chrn mattis23 vladimirov dIEMoSIRIS MoSi-Rostock
  • Asynchronous Event-Driven Particle Algorithms
    (2007), pp. 83-92.
    by Aleksandar Donev
    posted to algorithms molecular-dynamics simulation systems-biology by roland_ewald on 2007-06-21 01:22:35 as **** along with 2 groups dIEMoSIRIS MoSi-Rostock
  • Executable biology
    (2006), pp. 1675-1682.
    by Jasmin Fisher, Thomas A Henzinger
    posted to systems-biology by roland_ewald on 2007-08-07 17:25:25 as read along with 2 people and 3 groups wnpx dagmar dIEMoSIRIS MoSi-Rostock compneur
  • Application of a stochastic name-passing calculus to representation and simulation of molecular processes
    Inf. Process. Lett., Vol. 80, No. 1. (October 2001), pp. 25-31.
    by Corrado Priami, Aviv Regev, Ehud Shapiro, William Silverman
    posted to biology modeling process-algebra systems-biology by roland_ewald on 2007-04-13 13:27:43 as *** along with 1 person and 2 groups Ema dIEMoSIRIS MoSi-Rostock
  • BioAmbients: an abstraction for biological compartments
    Theor. Comput. Sci., Vol. 325, No. 1. (September 2004), pp. 141-167.
    by Aviv Regev, Ekaterina M Panina, William Silverman, Luca Cardelli, Ehud Shapiro
    posted to process-algebra systems-biology by roland_ewald on 2007-03-21 22:28:12 as * along with 1 person and 2 groups mattis23 dIEMoSIRIS MoSi-Rostock
  • A practical guide to stochastic simulations of reaction-diffusion processes
    (15 Apr 2007)
    by Radek Erban, Jonathan Chapman, Philip Maini
    posted to biology gillespie simulation stochastic-simulation systems-biology by roland_ewald on 2007-07-23 09:07:13 as * along with 3 people and 3 groups cottrell dagmar csgillespie dIEMoSIRIS MoSi-Rostock compneur
  • Stochastic Modelling for Systems Biology (Mathematical and Computational Biology)
    (18 April 2006)
    by Darren J Wilkinson
    posted to algorithms modeling petri-nets simulation systems-biology theory by roland_ewald on 2007-03-20 01:12:15 as read along with 2 people and 2 groups dherkova csgillespie dIEMoSIRIS MoSi-Rostock
  • Stochastic approaches for modelling in vivo reactions
    Computational Biology and Chemistry, Vol. 28, No. 3. (July 2004), pp. 165-178.
    by TE Turner, S Schnell, K Burrage
    posted to modeling systems-biology by roland_ewald on 2007-03-20 01:01:56 as read along with 6 people and 3 groups gabe_rosser brain jjray balabu schnell insectopalo IU_Informatics_CX dIEMoSIRIS MoSi-Rostock
  • Binomial leap methods for simulating stochastic chemical kinetics
    The Journal of Chemical Physics, Vol. 121, No. 21. (2004), pp. 10356-10364.
    by Tianhai Tian, Kevin Burrage
    posted to algorithms simulation systems-biology by roland_ewald on 2007-03-20 00:59:40 as read along with 1 person and 3 groups dagmar dIEMoSIRIS MoSi-Rostock compneur
  • Systems biology: a brief overview.
    Science, Vol. 295, No. 5560. (1 March 2002), pp. 1662-1664.
    by H Kitano
    posted to systems-biology theory by roland_ewald on 2007-03-20 00:44:36 as read along with 20 people and 6 groups nsamways edvin soramame_0518 lenov irenas Yanno Borelli wnpx biosv shivakumar3_14 dgront kehan cconboy mmt margaritis grahamc carmaus jdiezperezj maburkitt mertnuhoglu dbk-lab biodiversity_conservation Bioinformatics GrassBase dIEMoSIRIS MoSi-Rostock
  • Building with a scaffold: emerging strategies for high- to low-level cellular modeling.
    Trends Biotechnol, Vol. 21, No. 6. (June 2003), pp. 255-262.
    by T Ideker, D Lauffenburger
    posted to biology modeling multi-formalism-ms multi-level-ms systems-biology by roland_ewald on 2007-03-20 00:40:09 as ** along with 2 people and 2 groups wnpx mhucka dIEMoSIRIS MoSi-Rostock
  • Efficient formulation of the stochastic simulation algorithm for chemically reacting systems.
    J Chem Phys, Vol. 121, No. 9. (1 September 2004), pp. 4059-4067.
    by Y Cao, H Li, L Petzold
    posted to aascsp-examples algorithm-performance algorithms simulation systems-biology by roland_ewald on 2007-05-28 19:13:49 as *** along with 2 groups dIEMoSIRIS MoSi-Rostock
  • Computational Modeling of Genetic and Biochemical Networks (Computational Molecular Biology)
    (22 January 2001)
    by James M Bower, Hamid Bolouri
    posted to biology modeling simulation systems-biology by roland_ewald on 2007-03-25 11:41:54 as ** along with 1 person and 2 groups petermilner dIEMoSIRIS MoSi-Rostock
  • The slow-scale stochastic simulation algorithm.
    J Chem Phys, Vol. 122, No. 1. (1 January 2005)
    by Y Cao, DT Gillespie, LR Petzold
    posted to algorithms simulation stochastic-simulation systems-biology by roland_ewald on 2007-03-20 00:25:26 as ** along with 1 person and 3 groups dagmar dIEMoSIRIS MoSi-Rostock compneur
  • Model reduction and analysis of robustness for the Wnt/beta-catenin signal transduction pathway.
    Genome Inform, Vol. 15, No. 1. (2004), pp. 138-148.
    by R Krüger, R Heinrich
    posted to biology model-analysis modeling systems-biology wnt by roland_ewald on 2007-03-23 13:08:11 as ** along with 1 person and 2 groups arne dIEMoSIRIS MoSi-Rostock
  • Predictive Modeling of Signaling Crosstalk during C. elegans Vulval Development
    PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e92.
    by Jasmin Fisher, Nir Piterman, Alex Hajnal, Thomas A Henzinger
    posted to biology crosstalk model-checking modeling signaling-pathways systems-biology by roland_ewald on 2007-05-19 09:46:01 as ** along with 3 people and 2 groups kristgy carmaus ajgentles dIEMoSIRIS MoSi-Rostock
  • Stronger Computational Modelling of Signalling Pathways Using Both Continuous and Discrete-State Methods
    Computational Methods in Systems Biology (2006), pp. 63-77.
    by Muffy Calder, Adam Duguid, Stephen Gilmore, Jane Hillston
    posted to model-analysis modeling process-algebra signaling-pathways systems-biology by roland_ewald on 2007-05-25 09:50:12 as ** along with 2 groups dIEMoSIRIS MoSi-Rostock
  • Stochastic reaction-diffusion simulation with MesoRD
    Bioinformatics, Vol. 21, No. 12. (15 June 2005), pp. 2923-2924.
    by Johan Hattne, David Fange, Johan Elf
    posted to mesord simulation simulation-system spatial-simulation stochastic-simulation systems-biology by roland_ewald on 2007-03-19 23:52:07 as read along with 8 people and 4 groups arjunan csanford jberro balabu jiyu mattis23 dagmar lenov Projet_ENSIMAG dIEMoSIRIS MoSi-Rostock compneur
  • Beta Binders for Biological Interactions
    : Computational Methods in Systems Biology (2005), pp. 20-33.
    by Corrado Priami, Paola Quaglia
    posted to modeling process-algebra systems-biology by roland_ewald on 2007-03-23 12:47:35 as ** along with 1 person and 2 groups mattis23 dIEMoSIRIS MoSi-Rostock
  • Stochastic gene expression in a single cell.
    Science, Vol. 297, No. 5584. (16 August 2002), pp. 1183-1186.
    by MB Elowitz, AJ Levine, ED Siggia, PS Swain
    posted to biology modeling stochastic-simulation systems-biology by roland_ewald on 2007-03-19 23:49:53 as read along with 16 people and 3 groups mjoach austin jjray dylanwalker tvdbulck balicea jiny wilvc madhadron cottrell mmt litam mhucka timflutre margaritis ptupper UWNICU dIEMoSIRIS MoSi-Rostock
  • Simulation tools for biochemical networks: evaluation of performance and usability
    Bioinformatics, Vol. 21, No. 3. (01 February 2005), 357.
    by Antti Pettinen, Tommi Aho, Olli-Pekka Smolander, Tiina Manninen, Antti Saarinen, Kaisa-Leena Taattola, Olli Yli-Harja, Marja-Leena Linne
    posted to simulation survey systems-biology by roland_ewald on 2007-03-23 12:39:47 as ** along with 2 groups dIEMoSIRIS MoSi-Rostock
  • Biomolecular Agents as Multi-behavioural Concurrent Objects
    Electronic Notes in Theoretical Computer Science, Vol. 150, No. 1. (9 March 2006), pp. 31-49.
    by Denys Duchier, Celine Kuttler
    posted to agents modeling process-algebra systems-biology by roland_ewald on 2007-05-25 09:40:48 as ** along with 1 person and 2 groups carmaus dIEMoSIRIS MoSi-Rostock
  • Monte carlo simulations of enzyme reactions in two dimensions: fractal kinetics and spatial segregation.
    Biophys J, Vol. 83, No. 4. (October 2002), pp. 1891-1901.
    by H Berry
    posted to biology simulation spatial-simulation systems-biology by roland_ewald on 2007-03-19 23:41:16 as ** along with 2 people and 2 groups arjunan dagmar dIEMoSIRIS MoSi-Rostock
  • Cellular Automata Approaches to Enzymatic Reaction Networks
    Cellular Automata: 5th International Conference on Cellular Automata for Research and Industry, ACRI 2002, Geneva, Switzerland, October 9-11, 2002. Proceedings (2002), pp. 294-303.
    by Jörg R Weimar
    posted to algorithms cellular-automata modeling simulation spatial-simulation systems-biology by roland_ewald on 2007-03-19 23:32:16 as read along with 1 person and 2 groups dagmar dIEMoSIRIS MoSi-Rostock
  • A Numerical Aggregation Algorithm for the Enzyme-Catalyzed Substrate Conversion
    : Computational Methods in Systems Biology (2006), pp. 298-311.
    by Hauke Busch, Werner Sandmann, Verena Wolf
    posted to markov-processes model-analysis stochastic-simulation systems-biology by roland_ewald on 2007-03-23 12:01:30 as read along with 2 groups dIEMoSIRIS MoSi-Rostock
  • Quantitative cell biology with the Virtual Cell.
    Trends Cell Biol, Vol. 13, No. 11. (November 2003), pp. 570-576.
    by BM Slepchenko, JC Schaff, I Macara, LM Loew
    posted to modeling simulation simulation-system systems-biology virtual-cell by roland_ewald on 2007-03-26 11:58:35 as ** along with 1 person and 2 groups chrn dIEMoSIRIS MoSi-Rostock
  • The Virtual Cell: a software environment for computational cell biology.
    Trends Biotechnol, Vol. 19, No. 10. (October 2001), pp. 401-406.
    by LM Loew, JC Schaff
    posted to modeling simulation simulation-system systems-biology virtual-cell by roland_ewald on 2007-03-26 11:56:24 as ** along with 1 person and 2 groups chrn dIEMoSIRIS MoSi-Rostock
  • Toward large-scale modeling of the microbial cell for computer simulation.
    J Biotechnol, Vol. 113, No. 1-3. (30 September 2004), pp. 281-294.
    by N Ishii, M Robert, Y Nakayama, A Kanai, M Tomita
    posted to e-cell modeling simulation simulation-system systems-biology by roland_ewald on 2007-03-26 11:53:46 as ** along with 7 people and 3 groups eldan wnpx Doug cottrell livingthingdan josepe fishtank livingthing dIEMoSIRIS MoSi-Rostock
  • An Introduction to Stochastic Processes with Biology Applications
    (28 April 2003)
    by Linda J Allen
    posted to markov-processes modeling systems-biology theory by roland_ewald on 2007-07-17 09:48:27 as **** along with 2 groups dIEMoSIRIS MoSi-Rostock
  • Stochastic simulation of chemical reactions with spatial resolution and single molecule detail.
    Phys Biol, Vol. 1, No. 3-4. (December 2004), pp. 137-151.
    by SS Andrews, D Bray
    posted to biology modeling physics simulation smoldyn spatial-simulation systems-biology by roland_ewald on 2007-05-13 16:52:40 as ** along with 6 people and 3 groups arjunan gabe_rosser csanford m_j dagmar lenov dIEMoSIRIS MoSi-Rostock compneur
  • Integrated Transcriptomics, Proteomics, and Metabolomics Analyses To Survey Ozone Responses in the Leaves of Rice Seedling
    J. Proteome Res., Vol. 7, No. 7. (3 July 2008), pp. 2980-2998.
    by Kyoungwon Cho, Junko Shibato, Ganesh K Agrawal, Young-Ho Jung, Akihiro Kubo, Nam-Soo Jwa, Shigeru Tamogami, Kouji Satoh, Shoshi Kikuchi, Tetsuji Higashi, Shinzo Kimura, Hikaru Saji, Yoshihide Tanaka, Hitoshi Iwahashi, Yoshinori Masuo, Randeep Rakwal
    posted to transcriptomics systems-biology proteomics metabolomics data-integration by robertvandenberg on 2008-08-13 15:48:03 as **
  • A modelling approach to quantify dynamic crosstalk between the pheromone and the starvation pathway in baker's yeast
    FEBS Journal, Vol. 273, No. 15. (August 2006), pp. 3520-3533.
    by Jorg Schaber, Bente Kofahl, Axel Kowald, Edda Klipp
    posted to modelling simulation systems-biology yeast by pmendes on 2008-04-11 10:42:04 as *** along with 2 people and 1 group jtaylor arne dIEMoSIRIS
  • Modular cell biology: retroactivity and insulation
    Mol Syst Biol, Vol. 4 (12 February 2008)
    by Domitilla Del Vecchio, Alexander J Ninfa, Eduardo D Sontag
    posted to modularity systems-biology theory by pmendes on 2008-03-03 12:49:41 as *** along with 5 people AbnerCYH roys austin margaritis rsantana
  • Global parameter search reveals design principles of the mammalian circadian clock
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by James Locke, Pal Westermark, Achim Kramer, Hanspeter Herzel
    posted to circadian-clock optimization systems-biology by pmendes on 2008-03-10 08:56:08 as *****
  • Modelling the dynamics of the yeast pheromone pathway.
    Yeast, Vol. 21, No. 10. (30 July 2004), pp. 831-850.
    by B Kofahl, E Klipp
    posted to signalling systems-biology yeast by pmendes on 2008-04-10 22:22:05 as ** along with 2 people lukaswindhager tmt
  • A systems approach to delineate functions of paralogous transcription factors: Role of the Yap family in the DNA damage response
    Proceedings of the National Academy of Sciences, Vol. 105, No. 8. (26 February 2008), pp. 2934-2939.
    by Kai Tan, Hoda Feizi, Colin Luo, Stephanie H Fan, Timothy Ravasi, Trey G Ideker
    posted to systems-biology transcriptomics yap yeast by pmendes on 2008-03-07 16:20:56 as **** along with 2 people tmmurali djkt
  • Linking the genes: inferring quantitative gene networks from microarray data.
    Trends Genet, Vol. 18, No. 8. (August 2002), pp. 395-398.
    by A de la Fuente, P Brazhnik, P Mendes
    posted to gene-networks mendes reverse-engineering systems-biology transcriptomics by pmendes on 2008-02-29 17:31:10 as read along with 2 people and 3 groups beapen heliopais Atopic_and_Seborrhoeic_Dermatitis Skin_Deep Applied_Bimatics
  • Quantifying gene networks with regulatory strengths.
    Mol Biol Rep, Vol. 29, No. 1-2. (2002), pp. 73-77.
    by A de la Fuente, P Mendes
    posted to gene-networks mendes reverse-engineering systems-biology transcriptomics by pmendes on 2008-02-29 17:27:21 as read
  • Gene networks: how to put the function in genomics.
    Trends Biotechnol, Vol. 20, No. 11. (November 2002), pp. 467-472.
    by P Brazhnik, A de la Fuente, P Mendes
    posted to gene-networks mendes review systems-biology transcriptomics by pmendes on 2008-02-29 17:26:27 as read along with 1 person frohike
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