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Taggat som: structure [971 articles]

Senaste hänvisningarna som insorterats under taggen structure.
  • PKA Type IIalpha Holoenzyme Reveals a Combinatorial Strategy for Isoform Diversity
    Science, Vol. 318, No. 5848. (12 October 2007), pp. 274-279.
    by Jian Wu, Simon H Brown, Sventja von Daake, Susan S Taylor
    posted to diversity structure by zwang on 2007-10-22 13:25:05 as *
  • Structural basis for substrate loading in bacterial RNA polymerase
    Nature (20 June 2007)
    by Dmitry G Vassylyev, Marina N Vassylyeva, Jinwei Zhang, Murali Palangat, Irina Artsimovitch, Robert Landick
    posted to bacterial rna structure by zwang on 2007-08-28 03:58:36 as * along with 2 people margaritis Jporci
  • Toward high-resolution prediction and design of transmembrane helical protein structures
    Proceedings of the National Academy of Sciences, Vol. 104, No. 40. (2 October 2007), pp. 15682-15687.
    by P Barth, J Schonbrun, D Baker
    posted to expression prediction protein structure by zwang on 2007-10-08 19:01:24 as * along with 3 people hmk biehl Ema
  • Designed Protein-Protein Association
    Science, Vol. 319, No. 5860. (11 January 2008), pp. 206-209.
    by Dirk Grueninger, Nora Treiber, Mathias O Ziegler, Jochen W Koetter, Monika-Sarah Schulze, Georg E Schulz
    posted to interaction protein structure by zwang on 2008-01-17 04:23:36 as ** along with 5 people and 1 group cjeans cactus biomcgary sobolevnrm higueruelo baker-group
  • Crystal Structure of an Ancient Protein: Evolution by Conformational Epistasis
    Science (16 August 2007), 1142819.
    by Eric A Ortlund, Jamie T Bridgham, Matthew R Redinbo, Joseph W Thornton
    posted to co-evolution epistasis evolution mutation protein structure by zwang on 2007-08-18 08:37:30 as *** along with 4 people and 1 group bicko dpollard csjonline ramensky EisenLab
  • Structural basis for the selectivity of the external thioesterase of the surfactin synthetase
    Nature, Vol. 454, No. 7206., pp. 907-911.
    by Alexander Koglin, Frank Löhr, Frank Bernhard, Vladimir V Rogov, Dominique P Frueh, Eric R Strieter, Mohammad R Mofid, Peter Güntert, Gerhard Wagner, Christopher T Walsh, Mohamed A Marahiel, Volker Dötsch
    posted to protein structure by zwang on 2008-08-15 01:51:57 as **
  • Detecting evolutionary relationships across existing fold space, using sequence order-independent profile-profile alignments
    Proceedings of the National Academy of Sciences, Vol. 105, No. 14. (8 April 2008), pp. 5441-5446.
    by Lei Xie, Philip E Bourne
    posted to alignment evolution profile sequence structure by zwang on 2008-04-09 03:58:23 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Analyzing Protein Interaction Networks Using Structural Information
    Annual Review of Biochemistry, Vol. 77, No. 1. (2008)
    by Christina Kiel, Pedro Beltrao, Luis Serrano
    posted to interaction network protein review structure by zwang on 2008-07-16 04:11:11 as **** along with 8 people and 1 group chad_davis Borelli bicko neils Evangelia grahamc paolomarcatili phoenixzxl structural_bioinformatics
  • Molecular Engineering of Viral Gene Delivery Vehicles
    Annual Review of Biomedical Engineering, Vol. 10, No. 1. (2008), pp. 169-194.
    by David V Schaffer, James T Koerber, Kwang I Lim
    posted to gene structure virus by zwang on 2008-07-23 07:11:52 as **
  • The Modular Organization of Domain Structures: Insights into Protein–Protein Binding
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e239.
    by Del, Pablo Carbonell
    posted to binding domain protein structure by zwang on 2007-12-08 08:54:46 as ** along with 9 people bicko chad_davis choonpeng grahamc cjeans niallhaslam biehl marti carlk
  • Structure of RapA, a Swi2/Snf2 Protein that Recycles RNA Polymerase During Transcription
    Structure, Vol. 16, No. 9. (10 September 2008), pp. 1417-1427.
    by Gary Shaw, Jianhua Gan, Yan N Zhou, Huijun Zhi, Priadarsini Subburaman, Rongguang Zhang, Andrzej Joachimiak, Ding J Jin, Xinhua Ji
    posted to structure rna protein complex by zwang on 2008-09-11 13:26:52 as **
  • Prediction of the structure of symmetrical protein assemblies
    Proceedings of the National Academy of Sciences (31 October 2007), 0702626104.
    by Ingemar Andre, Philip Bradley, Chu Wang, David Baker
    posted to prediction protein structure by zwang on 2007-11-07 07:44:46 as * along with 4 people and 2 groups jwm jmrivort cjeans sobolevnrm Supramolecular baker-group
  • Implications from a Network-Based Topological Analysis of Ubiquitin Unfolding Simulations
    PLoS ONE, Vol. 3, No. 5. (14 May 2008), e2149.
    by Arun Krishnan, Alessandro Giuliani, Joseph P Zbilut, Masaru Tomita
    posted to folding network protein simulation structure by zwang on 2008-06-16 01:54:32 as ** along with 1 person phoenixzxl
  • Protein-Protein Interactions in the Membrane: Sequence, Structural, and Biological Motifs
    Structure, Vol. 16, No. 7. (9 July 2008), pp. 991-1001.
    by David T Moore, Bryan W Berger, William F Degrado
    posted to interaction protein structure by zwang on 2008-07-14 02:46:16 as ** along with 1 person neils
  • A study of communication pathways in methionyl- tRNA synthetase by molecular dynamics simulations and structure network analysis
    Proceedings of the National Academy of Sciences, Vol. 104, No. 40. (2 October 2007), pp. 15711-15716.
    by Amit Ghosh, Saraswathi Vishveshwara
    posted to network protein rna simulation structure by zwang on 2007-11-01 07:34:35 as ** along with 3 people and 1 group cactus sobolevnrm phoenixzxl baker-group
  • Accuracy of structure-based sequence alignments of automatic methods
    BMC Bioinformatics, Vol. 8 (20 September 2007), 355.
    by Changhoon Kim, Byungkook Lee
    posted to accuracy algorithm alignment sequence structure by zwang on 2007-11-01 07:29:02 as *** along with 3 people dimka chad_davis rabio
  • The long coming of computational structural biology
    Journal of Structural Biology, Vol. In Press, Accepted Manuscript
    by Andrei N Lupas
    posted to computational structure by zwang on 2008-03-20 13:25:51 as ** along with 1 group psique personal
  • Structural basis for transcription elongation by bacterial RNA polymerase
    Nature (20 June 2007)
    by Dmitry G Vassylyev, Marina N Vassylyeva, Anna Perederina, Tahir H Tahirov, Irina Artsimovitch
    posted to bacterial rna structure transcription by zwang on 2007-08-28 03:59:15 as * along with 2 people margaritis Jporci
  • In Search of the Biological Significance of Modular Structures in Protein Networks
    PLoS Computational Biology, Vol. 3, No. 6. (1 June 2007), e107.
    by Zhi Wang, Jianzhi Zhang
    posted to network protein structure by zwang on 2007-08-18 15:17:14 as *** along with 6 people and 2 groups jfr grahamc massivemayhem cjeans cabbagezs pinney Bioinformatics ParkinsonLab_at_MaRS
  • Assembly reflects evolution of protein complexes
    Nature (18 June 2008)
    by Emmanuel D Levy, Elisabetta B Erba, Carol V Robinson, Sarah A Teichmann
    posted to complex evolution protein structure by zwang on 2008-06-27 03:35:25 as **** along with 7 people psique marck paulschlesinger neils jwm faion phoenixzxl
  • A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation
    Proceedings of the National Academy of Sciences (28 December 2007), 0707684105.
    by Michal Brylinski, Jeffrey Skolnick
    posted to annotation binding prediction site structure threading by zwang on 2008-01-10 01:30:18 as ** along with 1 person cjeans
  • Quaternary Structure Constraints on Evolutionary Sequence Divergence
    Molecular Biology and Evolution, Vol. 24, No. 2. (February 2007), pp. 349-351.
    by Fornasari, Maria Silvina, Parisi, Gustavo, Echave, Julian
    posted to divergence evolution structure by zwang on 2007-04-12 13:19:48 as ** along with 1 person Garamonfok
  • Direct observation of fast protein conformational switching
    Proceedings of the National Academy of Sciences, Vol. 105, No. 25. (24 June 2008), pp. 8619-8624.
    by Haruto Ishikawa, Kyungwon Kwak, Jean K Chung, Seongheun Kim, Michael D Fayer
    posted to protein structure by zwang on 2008-06-25 05:44:14 as **
  • Kinetic evidence for a ligand-binding-induced conformational transition in the T cell receptor
    Proceedings of the National Academy of Sciences, Vol. 104, No. 42. (16 October 2007), pp. 16639-16644.
    by Dmitry M Gakamsky, Erwin Lewitzki, Ernst Grell, Xavier Saulquin, Bernard Malissen, Felix Montero-Julian, Marc Bonneville, Israel Pecht
    posted to binding protein purification structure by zwang on 2007-10-22 05:49:11 as *
  • Interaction Intimacy Affects Structure and Coevolutionary Dynamics in Mutualistic Networks
    Current Biology, Vol. 17, No. 20. (23 October 2007), pp. 1797-1803.
    by Guimaraes, Victor Rico-Gray, Paulo S Oliveira, Thiago J Izzo, Dos, John N Thompson
    posted to co-evolution dynamics interaction network structure by zwang on 2007-10-25 08:06:40 as ***
  • Predicting novel RNA-RNA interactions.
    Current opinion in structural biology (14 May 2008)
    by Irmtraud M M Meyer
    posted to interaction prediction rna structure by zwang on 2008-06-16 03:49:12 as ***** along with 1 person marck
  • Correlated substitution analysis and the prediction of amino acid structural contacts
    Brief Bioinform (13 November 2007), bbm052.
    by David S Horner, Walter Pirovano, Graziano Pesole
    posted to co-evolution contact prediction structure substitution by zwang on 2008-03-20 13:25:08 as *** along with 3 people and 3 groups barry sobolevnrm Lombardo_7 structural_bioinformatics Bioinformatics baker-group
  • Riboswitches: Emerging Themes in RNA Structure and Function
    Annual Review of Biophysics, Vol. 37, No. 1. (2008), pp. 117-133.
    by Rebecca K Montange, Robert T Batey
    posted to rna structure by zwang on 2008-05-08 09:48:18 as ****
  • Automated de novo prediction of native-like RNA tertiary structures
    PNAS (28 August 2007), 0703836104.
    by Rhiju Das, David Baker
    posted to prediction rna structure by zwang on 2007-08-31 16:23:25 as **** along with 6 people and 2 groups jwm marcius eckart_bindewald physics Ema reyez BioinfoCIPF SGU-CIPF
  • Structural basis for translation termination on the 70S ribosome
    Nature (02 July 2008)
    by Martin Laurberg, Haruichi Asahara, Andrei Korostelev, Jianyu Zhu, Sergei Trakhanov, Harry F Noller
    posted to complex protein structure by zwang on 2008-08-15 01:52:22 as **
  • Identification of Protein Domains by Shotgun Proteolysis
    Journal of Molecular Biology, Vol. In Press, Corrected Proof
    by Daniel Christ, Greg Winter
    posted to structure protein domain by zwang on 2008-09-16 14:28:20 as ** along with 1 person tny
  • Structural inference of native and partially folded RNA by high-throughput contact mapping
    Proceedings of the National Academy of Sciences, Vol. 105, No. 11. (18 March 2008), pp. 4144-4149.
    by Rhiju Das, Madhuri Kudaravalli, Magdalena Jonikas, Alain Laederach, Robert Fong, Jason P Schwans, David Baker, Joseph A Piccirilli, Russ B Altman, Daniel Herschlag
    posted to contact folding rna structure by zwang on 2008-03-20 13:00:39 as ***** along with 1 person and 1 group wsjames Oxford Virology
  • The role of disorder in interaction networks: a structural analysis
    Mol Syst Biol, Vol. 4 (25 March 2008)
    by Philip M Kim, Andrea Sboner, Yu Xia, Mark Gerstein
    posted to interaction network structure by zwang on 2008-03-27 05:09:26 as ** along with 5 people bootsy biomcgary maralena phoenixzxl chad_davis
  • High-resolution structure prediction and the crystallographic phase problem
    Nature (14 October 2007)
    by Bin Qian, Srivatsan Raman, Rhiju Das, Philip Bradley, Airlie J Mccoy, Randy J Read, David Baker
    posted to prediction structure by zwang on 2007-11-13 17:07:38 as *** along with 15 people and 2 groups apaydin aheilbut jwm chad_davis eckart_bindewald ffranca dgront massivemayhem cjeans cactus sobolevnrm boris_aguilar Ema chenway ardalby baker-group OPIG
  • A generative, probabilistic model of local protein structure
    Proceedings of the National Academy of Sciences, Vol. 105, No. 26. (1 July 2008), pp. 8932-8937.
    by Wouter Boomsma, Kanti V Mardia, Charles C Taylor, Jesper Ferkinghoff-Borg, Anders Krogh, Thomas Hamelryck
    posted to modeling protein structure by zwang on 2008-07-02 11:49:14 as * along with 5 people j3xucite bertelsen biehl apaydin mijam
  • Identification and Characterization of Cell Type-Specific and Ubiquitous Chromatin Regulatory Structures in the Human Genome.
    PLoS Genet, Vol. 3, No. 8. (17 August 2007)
    by Hualin Xi, Hennady P P Shulha, Jane M M Lin, Teresa R R Vales, Yutao Fu, David M M Bodine, Ronald D G D McKay, Josh G G Chenoweth, Paul J J Tesar, Terrence S S Furey, Bing Ren, Zhiping Weng, Gregory E E Crawford
    posted to chromatin genome human regulatory structure by zwang on 2007-09-03 15:16:23 as * along with 5 people and 2 groups dchughes sebastien_vigneau cabbagezs maximilianh eviledv G4ID Genetics-of-Gambling
  • Progress and challenges in protein structure prediction
    Current Opinion in Structural Biology, Vol. 18, No. 3. (June 2008), pp. 342-348.
    by Yang Zhang
    posted to prediction protein structure by zwang on 2008-06-27 03:37:25 as ** along with 3 people barry phoenixzxl marck
  • Quantifying the Impact of Protein Tertiary Structure on Molecular Evolution
    Mol Biol Evol (23 May 2007), msm097.
    by Sang C Choi, Asger Hobolth, Douglas M Robinson, Hirohisa Kishino, Jeffrey L Thorne
    posted to evolution protein structure by zwang on 2007-08-09 02:54:20 as ** along with 1 person penka
  • Deciphering RNA structural diversity and systematic phylogeny from microbial metagenomes
    Nucl. Acids Res., Vol. 35, No. 7. (1 April 2007), pp. 2283-2294.
    by Yanglong Zhu, Dileep K Pulukkunat, Yong Li
    posted to diversity phylogeny rna structure by zwang on 2007-05-08 12:14:37 as ***
  • PIGS: Automatic prediction of antibody structures
    Bioinformatics (19 July 2008), btn341.
    by Paolo Marcatili, Alessandra Rosi, Anna Tramontano
    posted to antibody prediction structure by zwang on 2008-07-26 10:47:53 as *** along with 1 person niallhaslam
  • Reuse of structural domain-domain interactions in protein networks
    BMC Bioinformatics, Vol. 8 (18 July 2007), 259.
    by Benjamin Schuster-Bockler, Alex Bateman
    posted to domain interaction network protein structure by zwang on 2007-08-15 03:32:04 as ** along with 3 people chad_davis carlk saket
  • Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms
    Proceedings of the National Academy of Sciences, Vol. 105, No. 32. (2008), pp. 11182-11187.
    by Kei-Ichi Okazaki, Shoji Takada
    posted to binding protein structure by zwang on 2008-08-14 07:25:41 as *
  • The dual-basin landscape in GFP folding
    Proceedings of the National Academy of Sciences, Vol. 105, No. 34. (2008), pp. 12283-12288.
    by Benjamin T Andrews, Shachi Gosavi, John M Finke, José N Onuchic, Patricia A Jennings
    posted to fluorescent folding protein structure by zwang on 2008-08-27 09:02:08 as **
  • Multiple structural alignment and clustering of RNA sequences.
    Bioinformatics (25 February 2007)
    by Elfar Torarinsson, Jakob H H Havgaard, Jan Gorodkin
    posted to alignment clustering rna structure by zwang on 2007-05-01 06:10:22 as ** along with 7 people and 2 groups marcius eckart_bindewald eweaver ppgardne ilh dunnp zhouyu BioinfoCIPF SGU-CIPF
  • Structure of the Chloroplast Ribosome: Novel Domains for Translation Regulation
    PLoS Biology, Vol. 5, No. 8. (1 August 2007), e209.
    by Andrea L Manuell, Joel Quispe, Stephen P Mayfield
    posted to domain regulation structure translation by zwang on 2007-08-15 06:29:51 as *
  • Protein model refinement using an optimized physics-based all-atom force field
    Proceedings of the National Academy of Sciences, Vol. 105, No. 24. (17 June 2008), pp. 8268-8273.
    by Anna Jagielska, Liliana Wroblewska, Jeffrey Skolnick
    posted to protein structure by zwang on 2008-06-27 03:37:45 as ** along with 3 people and 2 groups RamuAnandakrishnan jmccammon barry structural_bioinformatics McCammon
  • 3D models of yeast RNase P/MRP proteins Rpp1p and Pop3p
    RNA, Vol. 11, No. 2. (1 February 2005), pp. 123-127.
    by Mensur Dlakic
    posted to prediction protein rnasep structure subunit yeast by zwang on 2007-07-26 15:46:54 as ****
  • Importin-[beta]: Structural and Dynamic Determinants of a Molecular Spring
    Structure, Vol. 16, No. 6. (11 June 2008), pp. 906-915.
    by Ulrich Zachariae, Helmut Grubmüller
    posted to structure by zwang on 2008-07-07 04:14:27 as * along with 1 person choonpeng
  • A fast structural multiple alignment method for long RNA sequences
    BMC Bioinformatics, Vol. 9 (23 January 2008), 33.
    by Yasuo Tabei, Hisanori Kiryu, Taishin Kin, Kiyoshi Asai
    posted to alignment rna sequence structure by zwang on 2008-02-24 13:44:59 as ***** along with 1 person mtagaya
  • Protein folding and unfolding studied at atomic resolution by fast two-dimensional NMR spectroscopy
    PNAS, Vol. 104, No. 27. (3 July 2007), pp. 11257-11262.
    by Paul Schanda, Vincent Forge, Bernhard Brutscher
    posted to folding nmr protein structure by zwang on 2007-08-15 04:12:29 as ** along with 1 person rph
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